Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17005 and CSW01_17010 are separated by 123 nucleotides CSW01_17010 and CSW01_17015 are separated by 96 nucleotides CSW01_17015 and CSW01_17020 are separated by 74 nucleotides
CSW01_17005: CSW01_17005 - sensor domain-containing diguanylate cyclase, at 491,532 to 492,941
_17005
CSW01_17010: CSW01_17010 - tRNA-Gly, at 493,065 to 493,139
_17010
CSW01_17015: CSW01_17015 - gamma-glutamyltransferase family protein, at 493,236 to 494,804
_17015
CSW01_17020: CSW01_17020 - hypothetical protein, at 494,879 to 495,862
_17020
Position (kb) 493
494
495 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 492.257 kb on - strand, within CSW01_17005 at 492.334 kb on + strand, within CSW01_17005 at 492.403 kb on + strand, within CSW01_17005 at 492.549 kb on - strand, within CSW01_17005 at 492.688 kb on - strand, within CSW01_17005 at 492.792 kb on + strand, within CSW01_17005 at 492.819 kb on + strand at 492.819 kb on + strand at 492.827 kb on - strand at 492.862 kb on - strand at 492.880 kb on + strand at 492.887 kb on + strand at 492.911 kb on + strand at 492.911 kb on + strand at 492.942 kb on - strand at 492.942 kb on - strand at 493.341 kb on - strand at 493.361 kb on - strand at 493.383 kb on - strand at 493.457 kb on + strand, within CSW01_17015 at 493.457 kb on + strand, within CSW01_17015 at 493.465 kb on - strand, within CSW01_17015 at 493.473 kb on + strand, within CSW01_17015 at 493.481 kb on - strand, within CSW01_17015 at 493.485 kb on + strand, within CSW01_17015 at 493.493 kb on - strand, within CSW01_17015 at 493.526 kb on - strand, within CSW01_17015 at 493.598 kb on + strand, within CSW01_17015 at 493.601 kb on - strand, within CSW01_17015 at 493.684 kb on - strand, within CSW01_17015 at 493.691 kb on + strand, within CSW01_17015 at 493.699 kb on - strand, within CSW01_17015 at 493.778 kb on + strand, within CSW01_17015 at 493.786 kb on - strand, within CSW01_17015 at 493.789 kb on + strand, within CSW01_17015 at 493.807 kb on - strand, within CSW01_17015 at 493.935 kb on - strand, within CSW01_17015 at 493.940 kb on - strand, within CSW01_17015 at 494.243 kb on - strand, within CSW01_17015 at 494.256 kb on - strand, within CSW01_17015 at 494.283 kb on - strand, within CSW01_17015 at 494.311 kb on + strand, within CSW01_17015 at 494.311 kb on + strand, within CSW01_17015 at 494.322 kb on + strand, within CSW01_17015 at 494.324 kb on - strand, within CSW01_17015 at 494.324 kb on - strand, within CSW01_17015 at 494.441 kb on + strand, within CSW01_17015 at 494.525 kb on + strand, within CSW01_17015 at 494.647 kb on - strand, within CSW01_17015 at 494.736 kb on + strand at 494.891 kb on + strand at 494.913 kb on - strand at 495.149 kb on - strand, within CSW01_17020 at 495.294 kb on - strand, within CSW01_17020 at 495.347 kb on + strand, within CSW01_17020 at 495.355 kb on - strand, within CSW01_17020 at 495.433 kb on + strand, within CSW01_17020 at 495.441 kb on - strand, within CSW01_17020 at 495.467 kb on - strand, within CSW01_17020 at 495.547 kb on - strand, within CSW01_17020 at 495.581 kb on + strand, within CSW01_17020 at 495.587 kb on + strand, within CSW01_17020 at 495.617 kb on + strand, within CSW01_17020 at 495.625 kb on - strand, within CSW01_17020 at 495.632 kb on - strand, within CSW01_17020 at 495.693 kb on - strand, within CSW01_17020 at 495.693 kb on - strand, within CSW01_17020 at 495.802 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 492,257 - CSW01_17005 0.51 -0.2 492,334 + CSW01_17005 0.57 -1.9 492,403 + CSW01_17005 0.62 -0.7 492,549 - CSW01_17005 0.72 -1.0 492,688 - CSW01_17005 0.82 +0.7 492,792 + CSW01_17005 0.89 +1.4 492,819 + -0.1 492,819 + -2.0 492,827 - +1.4 492,862 - -2.6 492,880 + +1.0 492,887 + -0.1 492,911 + -1.0 492,911 + -0.1 492,942 - +0.6 492,942 - +0.1 493,341 - -1.2 493,361 - +0.7 493,383 - +0.7 493,457 + CSW01_17015 0.14 +1.4 493,457 + CSW01_17015 0.14 +0.8 493,465 - CSW01_17015 0.15 +1.8 493,473 + CSW01_17015 0.15 +1.1 493,481 - CSW01_17015 0.16 -1.3 493,485 + CSW01_17015 0.16 +0.1 493,493 - CSW01_17015 0.16 -2.6 493,526 - CSW01_17015 0.18 +0.6 493,598 + CSW01_17015 0.23 +0.8 493,601 - CSW01_17015 0.23 -0.9 493,684 - CSW01_17015 0.29 -0.7 493,691 + CSW01_17015 0.29 +0.1 493,699 - CSW01_17015 0.30 -0.4 493,778 + CSW01_17015 0.35 -1.2 493,786 - CSW01_17015 0.35 -3.4 493,789 + CSW01_17015 0.35 +1.8 493,807 - CSW01_17015 0.36 +1.8 493,935 - CSW01_17015 0.45 +0.9 493,940 - CSW01_17015 0.45 +0.7 494,243 - CSW01_17015 0.64 +0.9 494,256 - CSW01_17015 0.65 -1.0 494,283 - CSW01_17015 0.67 +0.8 494,311 + CSW01_17015 0.69 -1.2 494,311 + CSW01_17015 0.69 +0.7 494,322 + CSW01_17015 0.69 +1.9 494,324 - CSW01_17015 0.69 +0.4 494,324 - CSW01_17015 0.69 +0.3 494,441 + CSW01_17015 0.77 -0.4 494,525 + CSW01_17015 0.82 -3.0 494,647 - CSW01_17015 0.90 -0.2 494,736 + -1.3 494,891 + +0.1 494,913 - -0.6 495,149 - CSW01_17020 0.27 -0.8 495,294 - CSW01_17020 0.42 -0.9 495,347 + CSW01_17020 0.48 +0.3 495,355 - CSW01_17020 0.48 +2.5 495,433 + CSW01_17020 0.56 -0.4 495,441 - CSW01_17020 0.57 -1.6 495,467 - CSW01_17020 0.60 +0.4 495,547 - CSW01_17020 0.68 -2.0 495,581 + CSW01_17020 0.71 -1.6 495,587 + CSW01_17020 0.72 +0.2 495,617 + CSW01_17020 0.75 -1.2 495,625 - CSW01_17020 0.76 +1.0 495,632 - CSW01_17020 0.77 +0.9 495,693 - CSW01_17020 0.83 -0.3 495,693 - CSW01_17020 0.83 +1.8 495,802 - +1.3
Or see this region's nucleotide sequence