Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16995 and CSW01_17000 are separated by 410 nucleotides CSW01_17000 and CSW01_17005 are separated by 269 nucleotides
CSW01_16995: CSW01_16995 - MFS transporter, at 489,065 to 490,297
_16995
CSW01_17000: CSW01_17000 - DUF3332 domain-containing protein, at 490,708 to 491,262
_17000
CSW01_17005: CSW01_17005 - sensor domain-containing diguanylate cyclase, at 491,532 to 492,941
_17005
Position (kb) 490
491
492 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 489.756 kb on - strand, within CSW01_16995 at 489.845 kb on - strand, within CSW01_16995 at 489.877 kb on - strand, within CSW01_16995 at 489.938 kb on + strand, within CSW01_16995 at 489.944 kb on + strand, within CSW01_16995 at 490.009 kb on + strand, within CSW01_16995 at 490.102 kb on - strand, within CSW01_16995 at 490.102 kb on - strand, within CSW01_16995 at 490.157 kb on - strand, within CSW01_16995 at 490.279 kb on - strand at 490.725 kb on + strand at 490.909 kb on - strand, within CSW01_17000 at 491.064 kb on - strand, within CSW01_17000 at 491.139 kb on - strand, within CSW01_17000 at 491.213 kb on - strand at 491.285 kb on + strand at 491.313 kb on - strand at 491.344 kb on + strand at 491.346 kb on + strand at 491.479 kb on - strand at 491.544 kb on + strand at 491.544 kb on + strand at 491.544 kb on + strand at 491.544 kb on + strand at 491.632 kb on + strand at 491.640 kb on - strand at 491.657 kb on - strand at 491.657 kb on - strand at 491.841 kb on + strand, within CSW01_17005 at 491.846 kb on + strand, within CSW01_17005 at 491.864 kb on - strand, within CSW01_17005 at 491.905 kb on + strand, within CSW01_17005 at 491.912 kb on + strand, within CSW01_17005 at 491.983 kb on - strand, within CSW01_17005 at 492.012 kb on + strand, within CSW01_17005 at 492.026 kb on + strand, within CSW01_17005 at 492.066 kb on + strand, within CSW01_17005 at 492.128 kb on - strand, within CSW01_17005 at 492.174 kb on + strand, within CSW01_17005 at 492.257 kb on - strand, within CSW01_17005
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 489,756 - CSW01_16995 0.56 -2.6 489,845 - CSW01_16995 0.63 -2.4 489,877 - CSW01_16995 0.66 +0.4 489,938 + CSW01_16995 0.71 -1.5 489,944 + CSW01_16995 0.71 -0.1 490,009 + CSW01_16995 0.77 -1.2 490,102 - CSW01_16995 0.84 +0.2 490,102 - CSW01_16995 0.84 -0.5 490,157 - CSW01_16995 0.89 +0.8 490,279 - -1.1 490,725 + +0.3 490,909 - CSW01_17000 0.36 +0.5 491,064 - CSW01_17000 0.64 -3.1 491,139 - CSW01_17000 0.78 -1.8 491,213 - +2.6 491,285 + +1.4 491,313 - +0.1 491,344 + -3.6 491,346 + -0.2 491,479 - -4.3 491,544 + -0.5 491,544 + +0.4 491,544 + -2.3 491,544 + +0.6 491,632 + +0.5 491,640 - +2.0 491,657 - -1.2 491,657 - -0.5 491,841 + CSW01_17005 0.22 -1.9 491,846 + CSW01_17005 0.22 +1.0 491,864 - CSW01_17005 0.24 +1.2 491,905 + CSW01_17005 0.26 +0.4 491,912 + CSW01_17005 0.27 -2.0 491,983 - CSW01_17005 0.32 +0.7 492,012 + CSW01_17005 0.34 -0.9 492,026 + CSW01_17005 0.35 -2.6 492,066 + CSW01_17005 0.38 +1.2 492,128 - CSW01_17005 0.42 -0.0 492,174 + CSW01_17005 0.46 -0.4 492,257 - CSW01_17005 0.51 -0.2
Or see this region's nucleotide sequence