Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16880

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16875 and CSW01_16880 are separated by 322 nucleotidesCSW01_16880 and CSW01_16885 are separated by 97 nucleotides CSW01_16875: CSW01_16875 - ribosome biogenesis GTPase YlqF, at 460,605 to 461,549 _16875 CSW01_16880: CSW01_16880 - potassium transporter Kup, at 461,872 to 463,734 _16880 CSW01_16885: CSW01_16885 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 463,832 to 467,071 _16885 Position (kb) 461 462 463 464Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 461.642 kb on - strandat 461.642 kb on - strandat 461.683 kb on - strandat 461.752 kb on - strandat 461.794 kb on + strandat 461.829 kb on + strandat 461.871 kb on + strandat 461.981 kb on + strandat 462.115 kb on + strand, within CSW01_16880at 462.158 kb on - strand, within CSW01_16880at 462.173 kb on - strand, within CSW01_16880at 462.180 kb on + strand, within CSW01_16880at 462.253 kb on + strand, within CSW01_16880at 462.253 kb on + strand, within CSW01_16880at 462.289 kb on + strand, within CSW01_16880at 462.290 kb on + strand, within CSW01_16880at 462.298 kb on - strand, within CSW01_16880at 462.300 kb on + strand, within CSW01_16880at 462.314 kb on + strand, within CSW01_16880at 462.358 kb on - strand, within CSW01_16880at 462.448 kb on + strand, within CSW01_16880at 462.456 kb on - strand, within CSW01_16880at 462.511 kb on - strand, within CSW01_16880at 462.602 kb on - strand, within CSW01_16880at 462.626 kb on - strand, within CSW01_16880at 462.673 kb on - strand, within CSW01_16880at 462.697 kb on + strand, within CSW01_16880at 462.718 kb on + strand, within CSW01_16880at 462.719 kb on - strand, within CSW01_16880at 462.782 kb on + strand, within CSW01_16880at 462.805 kb on + strand, within CSW01_16880at 462.813 kb on - strand, within CSW01_16880at 462.854 kb on + strand, within CSW01_16880at 462.854 kb on + strand, within CSW01_16880at 462.961 kb on + strand, within CSW01_16880at 462.964 kb on + strand, within CSW01_16880at 462.964 kb on + strand, within CSW01_16880at 462.964 kb on + strand, within CSW01_16880at 462.971 kb on + strand, within CSW01_16880at 462.972 kb on - strand, within CSW01_16880at 462.979 kb on - strand, within CSW01_16880at 463.039 kb on - strand, within CSW01_16880at 463.131 kb on + strand, within CSW01_16880at 463.268 kb on + strand, within CSW01_16880at 463.324 kb on + strand, within CSW01_16880at 463.356 kb on + strand, within CSW01_16880at 463.381 kb on + strand, within CSW01_16880at 463.444 kb on + strand, within CSW01_16880at 463.471 kb on + strand, within CSW01_16880at 463.580 kb on + strandat 463.588 kb on - strandat 463.588 kb on - strandat 463.588 kb on - strandat 463.588 kb on - strandat 463.736 kb on - strandat 463.761 kb on - strandat 463.784 kb on + strandat 463.792 kb on - strandat 463.792 kb on - strandat 463.897 kb on + strandat 463.905 kb on - strandat 463.917 kb on + strandat 463.925 kb on - strandat 463.940 kb on - strandat 463.983 kb on + strandat 463.991 kb on - strandat 463.993 kb on + strandat 464.056 kb on - strandat 464.157 kb on + strand, within CSW01_16885at 464.163 kb on + strand, within CSW01_16885at 464.163 kb on + strand, within CSW01_16885at 464.163 kb on + strand, within CSW01_16885at 464.163 kb on + strand, within CSW01_16885at 464.165 kb on - strand, within CSW01_16885at 464.171 kb on - strand, within CSW01_16885at 464.171 kb on - strand, within CSW01_16885at 464.171 kb on - strand, within CSW01_16885at 464.263 kb on - strand, within CSW01_16885at 464.265 kb on + strand, within CSW01_16885at 464.314 kb on + strand, within CSW01_16885at 464.359 kb on + strand, within CSW01_16885at 464.400 kb on + strand, within CSW01_16885at 464.499 kb on - strand, within CSW01_16885at 464.542 kb on - strand, within CSW01_16885at 464.542 kb on - strand, within CSW01_16885at 464.659 kb on + strand, within CSW01_16885

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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461,642 - -0.1
461,642 - -0.0
461,683 - -0.5
461,752 - +1.0
461,794 + -1.0
461,829 + -0.1
461,871 + -0.6
461,981 + +1.1
462,115 + CSW01_16880 0.13 +1.2
462,158 - CSW01_16880 0.15 +1.3
462,173 - CSW01_16880 0.16 +1.0
462,180 + CSW01_16880 0.17 +0.9
462,253 + CSW01_16880 0.20 -3.7
462,253 + CSW01_16880 0.20 -0.9
462,289 + CSW01_16880 0.22 -0.4
462,290 + CSW01_16880 0.22 +0.6
462,298 - CSW01_16880 0.23 -0.8
462,300 + CSW01_16880 0.23 -0.4
462,314 + CSW01_16880 0.24 -0.0
462,358 - CSW01_16880 0.26 +1.1
462,448 + CSW01_16880 0.31 -2.2
462,456 - CSW01_16880 0.31 -0.2
462,511 - CSW01_16880 0.34 -0.4
462,602 - CSW01_16880 0.39 +0.5
462,626 - CSW01_16880 0.40 +0.2
462,673 - CSW01_16880 0.43 -3.0
462,697 + CSW01_16880 0.44 -2.8
462,718 + CSW01_16880 0.45 +1.0
462,719 - CSW01_16880 0.45 +1.0
462,782 + CSW01_16880 0.49 +0.6
462,805 + CSW01_16880 0.50 +0.7
462,813 - CSW01_16880 0.51 +0.5
462,854 + CSW01_16880 0.53 -0.4
462,854 + CSW01_16880 0.53 +1.4
462,961 + CSW01_16880 0.58 +1.0
462,964 + CSW01_16880 0.59 +1.3
462,964 + CSW01_16880 0.59 +0.4
462,964 + CSW01_16880 0.59 +1.7
462,971 + CSW01_16880 0.59 +1.1
462,972 - CSW01_16880 0.59 +0.8
462,979 - CSW01_16880 0.59 +0.5
463,039 - CSW01_16880 0.63 +0.5
463,131 + CSW01_16880 0.68 -1.9
463,268 + CSW01_16880 0.75 +1.9
463,324 + CSW01_16880 0.78 +1.0
463,356 + CSW01_16880 0.80 +1.1
463,381 + CSW01_16880 0.81 +0.4
463,444 + CSW01_16880 0.84 -1.5
463,471 + CSW01_16880 0.86 -0.2
463,580 + +0.0
463,588 - +1.4
463,588 - -0.4
463,588 - +0.8
463,588 - -1.2
463,736 - -0.0
463,761 - +0.6
463,784 + +0.7
463,792 - -0.5
463,792 - -1.4
463,897 + +0.8
463,905 - +0.6
463,917 + -0.2
463,925 - -0.6
463,940 - -0.5
463,983 + -0.9
463,991 - -1.1
463,993 + -0.9
464,056 - +1.5
464,157 + CSW01_16885 0.10 -0.1
464,163 + CSW01_16885 0.10 -0.4
464,163 + CSW01_16885 0.10 +0.7
464,163 + CSW01_16885 0.10 -2.1
464,163 + CSW01_16885 0.10 +1.4
464,165 - CSW01_16885 0.10 +0.5
464,171 - CSW01_16885 0.10 -2.0
464,171 - CSW01_16885 0.10 +0.8
464,171 - CSW01_16885 0.10 +1.0
464,263 - CSW01_16885 0.13 -1.9
464,265 + CSW01_16885 0.13 +0.6
464,314 + CSW01_16885 0.15 -0.6
464,359 + CSW01_16885 0.16 -0.4
464,400 + CSW01_16885 0.18 -0.5
464,499 - CSW01_16885 0.21 -1.7
464,542 - CSW01_16885 0.22 +1.6
464,542 - CSW01_16885 0.22 +0.3
464,659 + CSW01_16885 0.26 -0.6

Or see this region's nucleotide sequence