Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16845

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16840 and CSW01_16845 are separated by 1 nucleotidesCSW01_16845 and CSW01_16850 are separated by 96 nucleotides CSW01_16840: CSW01_16840 - exonuclease sbcCD subunit D, at 448,636 to 449,775 _16840 CSW01_16845: CSW01_16845 - nuclease SbcCD subunit C, at 449,777 to 452,818 _16845 CSW01_16850: CSW01_16850 - hybrid sensor histidine kinase/response regulator, at 452,915 to 454,975 _16850 Position (kb) 449 450 451 452 453Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 448.894 kb on + strand, within CSW01_16840at 448.984 kb on + strand, within CSW01_16840at 449.021 kb on + strand, within CSW01_16840at 449.063 kb on + strand, within CSW01_16840at 449.173 kb on - strand, within CSW01_16840at 449.187 kb on + strand, within CSW01_16840at 449.228 kb on + strand, within CSW01_16840at 449.236 kb on - strand, within CSW01_16840at 449.350 kb on - strand, within CSW01_16840at 449.398 kb on + strand, within CSW01_16840at 449.406 kb on - strand, within CSW01_16840at 449.406 kb on - strand, within CSW01_16840at 449.413 kb on + strand, within CSW01_16840at 449.568 kb on + strand, within CSW01_16840at 449.587 kb on + strand, within CSW01_16840at 449.762 kb on - strandat 449.804 kb on + strandat 449.848 kb on + strandat 449.950 kb on - strandat 450.122 kb on + strand, within CSW01_16845at 450.207 kb on + strand, within CSW01_16845at 450.233 kb on + strand, within CSW01_16845at 450.233 kb on + strand, within CSW01_16845at 450.279 kb on + strand, within CSW01_16845at 450.287 kb on - strand, within CSW01_16845at 450.421 kb on - strand, within CSW01_16845at 450.446 kb on - strand, within CSW01_16845at 450.446 kb on - strand, within CSW01_16845at 450.479 kb on + strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.510 kb on - strand, within CSW01_16845at 450.528 kb on - strand, within CSW01_16845at 450.544 kb on + strand, within CSW01_16845at 450.564 kb on - strand, within CSW01_16845at 450.634 kb on + strand, within CSW01_16845at 450.642 kb on - strand, within CSW01_16845at 450.775 kb on + strand, within CSW01_16845at 450.783 kb on - strand, within CSW01_16845at 450.783 kb on - strand, within CSW01_16845at 450.829 kb on - strand, within CSW01_16845at 450.829 kb on - strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.930 kb on - strand, within CSW01_16845at 450.930 kb on - strand, within CSW01_16845at 450.930 kb on - strand, within CSW01_16845at 450.930 kb on - strand, within CSW01_16845at 450.930 kb on - strand, within CSW01_16845at 450.936 kb on - strand, within CSW01_16845at 451.097 kb on + strand, within CSW01_16845at 451.105 kb on - strand, within CSW01_16845at 451.105 kb on - strand, within CSW01_16845at 451.162 kb on - strand, within CSW01_16845at 451.194 kb on - strand, within CSW01_16845at 451.196 kb on - strand, within CSW01_16845at 451.247 kb on + strand, within CSW01_16845at 451.311 kb on + strand, within CSW01_16845at 451.311 kb on + strand, within CSW01_16845at 451.311 kb on + strand, within CSW01_16845at 451.444 kb on + strand, within CSW01_16845at 451.444 kb on + strand, within CSW01_16845at 451.576 kb on + strand, within CSW01_16845at 451.781 kb on + strand, within CSW01_16845at 451.845 kb on + strand, within CSW01_16845at 451.872 kb on + strand, within CSW01_16845at 451.950 kb on + strand, within CSW01_16845at 451.957 kb on - strand, within CSW01_16845at 452.060 kb on + strand, within CSW01_16845at 452.078 kb on + strand, within CSW01_16845at 452.177 kb on + strand, within CSW01_16845at 452.354 kb on - strand, within CSW01_16845at 452.354 kb on - strand, within CSW01_16845at 452.494 kb on - strand, within CSW01_16845at 452.593 kb on + strandat 452.601 kb on - strandat 452.601 kb on - strandat 452.750 kb on + strandat 452.791 kb on + strandat 452.868 kb on + strandat 452.979 kb on - strandat 453.085 kb on + strandat 453.140 kb on - strand, within CSW01_16850at 453.159 kb on + strand, within CSW01_16850at 453.199 kb on - strand, within CSW01_16850at 453.284 kb on - strand, within CSW01_16850at 453.510 kb on - strand, within CSW01_16850at 453.799 kb on - strand, within CSW01_16850

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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448,894 + CSW01_16840 0.23 -0.3
448,984 + CSW01_16840 0.31 +0.4
449,021 + CSW01_16840 0.34 +1.4
449,063 + CSW01_16840 0.37 -0.3
449,173 - CSW01_16840 0.47 +0.7
449,187 + CSW01_16840 0.48 -0.4
449,228 + CSW01_16840 0.52 -2.3
449,236 - CSW01_16840 0.53 -1.4
449,350 - CSW01_16840 0.63 -0.3
449,398 + CSW01_16840 0.67 +1.2
449,406 - CSW01_16840 0.68 -2.0
449,406 - CSW01_16840 0.68 -1.7
449,413 + CSW01_16840 0.68 -1.0
449,568 + CSW01_16840 0.82 +0.1
449,587 + CSW01_16840 0.83 +0.2
449,762 - +1.3
449,804 + -0.1
449,848 + +1.5
449,950 - -0.5
450,122 + CSW01_16845 0.11 +0.6
450,207 + CSW01_16845 0.14 -1.7
450,233 + CSW01_16845 0.15 -2.7
450,233 + CSW01_16845 0.15 +0.9
450,279 + CSW01_16845 0.17 -0.7
450,287 - CSW01_16845 0.17 -1.7
450,421 - CSW01_16845 0.21 +0.4
450,446 - CSW01_16845 0.22 -2.8
450,446 - CSW01_16845 0.22 +1.0
450,479 + CSW01_16845 0.23 +0.2
450,487 - CSW01_16845 0.23 -0.8
450,487 - CSW01_16845 0.23 +0.4
450,487 - CSW01_16845 0.23 +0.9
450,487 - CSW01_16845 0.23 +0.5
450,487 - CSW01_16845 0.23 +1.5
450,487 - CSW01_16845 0.23 -2.7
450,487 - CSW01_16845 0.23 +2.5
450,510 - CSW01_16845 0.24 +0.5
450,528 - CSW01_16845 0.25 -0.1
450,544 + CSW01_16845 0.25 -1.4
450,564 - CSW01_16845 0.26 +1.2
450,634 + CSW01_16845 0.28 +1.8
450,642 - CSW01_16845 0.28 -1.9
450,775 + CSW01_16845 0.33 +0.4
450,783 - CSW01_16845 0.33 +0.3
450,783 - CSW01_16845 0.33 -0.5
450,829 - CSW01_16845 0.35 -2.4
450,829 - CSW01_16845 0.35 -0.3
450,922 + CSW01_16845 0.38 -1.3
450,922 + CSW01_16845 0.38 +1.8
450,922 + CSW01_16845 0.38 -0.5
450,922 + CSW01_16845 0.38 +1.5
450,922 + CSW01_16845 0.38 -0.1
450,922 + CSW01_16845 0.38 -0.6
450,922 + CSW01_16845 0.38 +2.4
450,922 + CSW01_16845 0.38 -1.7
450,922 + CSW01_16845 0.38 -0.8
450,930 - CSW01_16845 0.38 -0.0
450,930 - CSW01_16845 0.38 +0.8
450,930 - CSW01_16845 0.38 +0.9
450,930 - CSW01_16845 0.38 +1.0
450,930 - CSW01_16845 0.38 -0.0
450,936 - CSW01_16845 0.38 -1.3
451,097 + CSW01_16845 0.43 -0.4
451,105 - CSW01_16845 0.44 -0.8
451,105 - CSW01_16845 0.44 +0.4
451,162 - CSW01_16845 0.46 +2.1
451,194 - CSW01_16845 0.47 -1.7
451,196 - CSW01_16845 0.47 +0.5
451,247 + CSW01_16845 0.48 +2.2
451,311 + CSW01_16845 0.50 -1.6
451,311 + CSW01_16845 0.50 +1.8
451,311 + CSW01_16845 0.50 -0.7
451,444 + CSW01_16845 0.55 +0.9
451,444 + CSW01_16845 0.55 -2.0
451,576 + CSW01_16845 0.59 +0.5
451,781 + CSW01_16845 0.66 -1.4
451,845 + CSW01_16845 0.68 +1.1
451,872 + CSW01_16845 0.69 +0.3
451,950 + CSW01_16845 0.71 +0.3
451,957 - CSW01_16845 0.72 -0.8
452,060 + CSW01_16845 0.75 +0.3
452,078 + CSW01_16845 0.76 -2.4
452,177 + CSW01_16845 0.79 +0.7
452,354 - CSW01_16845 0.85 +0.4
452,354 - CSW01_16845 0.85 +4.1
452,494 - CSW01_16845 0.89 +0.1
452,593 + +1.8
452,601 - +0.0
452,601 - -2.3
452,750 + -1.2
452,791 + -2.3
452,868 + -3.0
452,979 - -2.6
453,085 + -0.4
453,140 - CSW01_16850 0.11 +0.3
453,159 + CSW01_16850 0.12 -1.6
453,199 - CSW01_16850 0.14 -0.5
453,284 - CSW01_16850 0.18 -0.6
453,510 - CSW01_16850 0.29 -0.1
453,799 - CSW01_16850 0.43 -1.0

Or see this region's nucleotide sequence