Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16840

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16835 and CSW01_16840 are separated by 53 nucleotidesCSW01_16840 and CSW01_16845 are separated by 1 nucleotides CSW01_16835: CSW01_16835 - catabolite repressor/activator, at 447,602 to 448,582 _16835 CSW01_16840: CSW01_16840 - exonuclease sbcCD subunit D, at 448,636 to 449,775 _16840 CSW01_16845: CSW01_16845 - nuclease SbcCD subunit C, at 449,777 to 452,818 _16845 Position (kb) 448 449 450Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 447.691 kb on - strandat 447.784 kb on - strand, within CSW01_16835at 447.846 kb on + strand, within CSW01_16835at 447.935 kb on + strand, within CSW01_16835at 447.936 kb on - strand, within CSW01_16835at 448.063 kb on + strand, within CSW01_16835at 448.132 kb on + strand, within CSW01_16835at 448.151 kb on - strand, within CSW01_16835at 448.199 kb on + strand, within CSW01_16835at 448.212 kb on + strand, within CSW01_16835at 448.212 kb on + strand, within CSW01_16835at 448.231 kb on + strand, within CSW01_16835at 448.243 kb on + strand, within CSW01_16835at 448.251 kb on - strand, within CSW01_16835at 448.274 kb on - strand, within CSW01_16835at 448.348 kb on + strand, within CSW01_16835at 448.367 kb on - strand, within CSW01_16835at 448.563 kb on + strandat 448.563 kb on + strandat 448.563 kb on + strandat 448.563 kb on + strandat 448.563 kb on + strandat 448.571 kb on - strandat 448.571 kb on - strandat 448.634 kb on - strandat 448.641 kb on - strandat 448.894 kb on + strand, within CSW01_16840at 448.984 kb on + strand, within CSW01_16840at 449.021 kb on + strand, within CSW01_16840at 449.063 kb on + strand, within CSW01_16840at 449.173 kb on - strand, within CSW01_16840at 449.187 kb on + strand, within CSW01_16840at 449.228 kb on + strand, within CSW01_16840at 449.236 kb on - strand, within CSW01_16840at 449.350 kb on - strand, within CSW01_16840at 449.398 kb on + strand, within CSW01_16840at 449.406 kb on - strand, within CSW01_16840at 449.406 kb on - strand, within CSW01_16840at 449.413 kb on + strand, within CSW01_16840at 449.568 kb on + strand, within CSW01_16840at 449.587 kb on + strand, within CSW01_16840at 449.762 kb on - strandat 449.804 kb on + strandat 449.848 kb on + strandat 449.950 kb on - strandat 450.122 kb on + strand, within CSW01_16845at 450.207 kb on + strand, within CSW01_16845at 450.233 kb on + strand, within CSW01_16845at 450.233 kb on + strand, within CSW01_16845at 450.279 kb on + strand, within CSW01_16845at 450.287 kb on - strand, within CSW01_16845at 450.421 kb on - strand, within CSW01_16845at 450.446 kb on - strand, within CSW01_16845at 450.446 kb on - strand, within CSW01_16845at 450.479 kb on + strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.510 kb on - strand, within CSW01_16845at 450.528 kb on - strand, within CSW01_16845at 450.544 kb on + strand, within CSW01_16845at 450.564 kb on - strand, within CSW01_16845at 450.634 kb on + strand, within CSW01_16845at 450.642 kb on - strand, within CSW01_16845at 450.775 kb on + strand, within CSW01_16845

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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447,691 - +0.1
447,784 - CSW01_16835 0.19 -3.0
447,846 + CSW01_16835 0.25 +1.3
447,935 + CSW01_16835 0.34 -0.3
447,936 - CSW01_16835 0.34 -0.2
448,063 + CSW01_16835 0.47 -3.2
448,132 + CSW01_16835 0.54 -3.3
448,151 - CSW01_16835 0.56 -0.2
448,199 + CSW01_16835 0.61 -1.2
448,212 + CSW01_16835 0.62 -2.0
448,212 + CSW01_16835 0.62 -1.5
448,231 + CSW01_16835 0.64 -1.6
448,243 + CSW01_16835 0.65 -2.8
448,251 - CSW01_16835 0.66 +0.5
448,274 - CSW01_16835 0.69 +0.0
448,348 + CSW01_16835 0.76 -2.6
448,367 - CSW01_16835 0.78 -2.6
448,563 + +0.2
448,563 + +0.3
448,563 + -0.5
448,563 + -0.5
448,563 + -1.9
448,571 - -0.3
448,571 - -4.0
448,634 - +0.3
448,641 - -1.2
448,894 + CSW01_16840 0.23 -0.3
448,984 + CSW01_16840 0.31 +0.4
449,021 + CSW01_16840 0.34 +1.4
449,063 + CSW01_16840 0.37 -0.3
449,173 - CSW01_16840 0.47 +0.7
449,187 + CSW01_16840 0.48 -0.4
449,228 + CSW01_16840 0.52 -2.3
449,236 - CSW01_16840 0.53 -1.4
449,350 - CSW01_16840 0.63 -0.3
449,398 + CSW01_16840 0.67 +1.2
449,406 - CSW01_16840 0.68 -2.0
449,406 - CSW01_16840 0.68 -1.7
449,413 + CSW01_16840 0.68 -1.0
449,568 + CSW01_16840 0.82 +0.1
449,587 + CSW01_16840 0.83 +0.2
449,762 - +1.3
449,804 + -0.1
449,848 + +1.5
449,950 - -0.5
450,122 + CSW01_16845 0.11 +0.6
450,207 + CSW01_16845 0.14 -1.7
450,233 + CSW01_16845 0.15 -2.7
450,233 + CSW01_16845 0.15 +0.9
450,279 + CSW01_16845 0.17 -0.7
450,287 - CSW01_16845 0.17 -1.7
450,421 - CSW01_16845 0.21 +0.4
450,446 - CSW01_16845 0.22 -2.8
450,446 - CSW01_16845 0.22 +1.0
450,479 + CSW01_16845 0.23 +0.2
450,487 - CSW01_16845 0.23 -0.8
450,487 - CSW01_16845 0.23 +0.4
450,487 - CSW01_16845 0.23 +0.9
450,487 - CSW01_16845 0.23 +0.5
450,487 - CSW01_16845 0.23 +1.5
450,487 - CSW01_16845 0.23 -2.7
450,487 - CSW01_16845 0.23 +2.5
450,510 - CSW01_16845 0.24 +0.5
450,528 - CSW01_16845 0.25 -0.1
450,544 + CSW01_16845 0.25 -1.4
450,564 - CSW01_16845 0.26 +1.2
450,634 + CSW01_16845 0.28 +1.8
450,642 - CSW01_16845 0.28 -1.9
450,775 + CSW01_16845 0.33 +0.4

Or see this region's nucleotide sequence