Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16415 and CSW01_16420 are separated by 177 nucleotides CSW01_16420 and CSW01_16425 are separated by 150 nucleotides CSW01_16425 and CSW01_16430 are separated by 137 nucleotides CSW01_16430 and CSW01_16435 are separated by 1 nucleotides CSW01_16435 and CSW01_16440 are separated by 79 nucleotides
CSW01_16415: CSW01_16415 - hypothetical protein, at 399,501 to 399,926
_16415
CSW01_16420: CSW01_16420 - DUF3465 domain-containing protein, at 400,104 to 400,529
_16420
CSW01_16425: CSW01_16425 - hypothetical protein, at 400,680 to 401,210
_16425
CSW01_16430: CSW01_16430 - hypothetical protein, at 401,348 to 401,848
_16430
CSW01_16435: CSW01_16435 - DUF3265 domain-containing protein, at 401,850 to 401,924
_16435
CSW01_16440: CSW01_16440 - hypothetical protein, at 402,004 to 402,401
_16440
Position (kb) 400
401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 400.137 kb on - strand at 400.161 kb on + strand, within CSW01_16420 at 400.179 kb on - strand, within CSW01_16420 at 400.247 kb on + strand, within CSW01_16420 at 400.283 kb on - strand, within CSW01_16420 at 400.653 kb on + strand at 400.660 kb on + strand at 400.725 kb on + strand at 400.726 kb on - strand at 400.797 kb on + strand, within CSW01_16425 at 400.854 kb on + strand, within CSW01_16425 at 400.863 kb on + strand, within CSW01_16425 at 400.863 kb on + strand, within CSW01_16425 at 400.871 kb on - strand, within CSW01_16425 at 400.871 kb on - strand, within CSW01_16425 at 400.871 kb on - strand, within CSW01_16425 at 400.975 kb on + strand, within CSW01_16425 at 400.988 kb on - strand, within CSW01_16425 at 401.085 kb on - strand, within CSW01_16425 at 401.103 kb on + strand, within CSW01_16425 at 401.111 kb on - strand, within CSW01_16425 at 401.111 kb on - strand, within CSW01_16425 at 401.150 kb on + strand, within CSW01_16425 at 401.163 kb on + strand at 401.225 kb on - strand at 401.225 kb on - strand at 401.225 kb on - strand at 401.277 kb on - strand at 401.277 kb on - strand at 401.312 kb on + strand at 401.314 kb on + strand at 401.315 kb on + strand at 401.323 kb on - strand at 401.325 kb on + strand at 401.325 kb on + strand at 401.339 kb on - strand at 401.406 kb on + strand, within CSW01_16430 at 401.433 kb on + strand, within CSW01_16430 at 401.496 kb on + strand, within CSW01_16430 at 401.507 kb on + strand, within CSW01_16430 at 401.552 kb on + strand, within CSW01_16430 at 401.574 kb on + strand, within CSW01_16430 at 401.574 kb on + strand, within CSW01_16430 at 401.580 kb on + strand, within CSW01_16430 at 401.582 kb on + strand, within CSW01_16430 at 401.590 kb on - strand, within CSW01_16430 at 401.673 kb on + strand, within CSW01_16430 at 401.681 kb on - strand, within CSW01_16430 at 401.681 kb on - strand, within CSW01_16430 at 401.681 kb on - strand, within CSW01_16430 at 401.708 kb on - strand, within CSW01_16430 at 401.796 kb on - strand, within CSW01_16430 at 401.841 kb on + strand at 401.913 kb on - strand, within CSW01_16435 at 401.933 kb on + strand at 401.956 kb on + strand at 401.956 kb on + strand at 401.966 kb on + strand at 401.966 kb on + strand at 401.966 kb on + strand at 401.966 kb on + strand at 401.966 kb on + strand at 401.966 kb on + strand at 401.966 kb on + strand at 402.063 kb on + strand, within CSW01_16440 at 402.087 kb on - strand, within CSW01_16440 at 402.087 kb on - strand, within CSW01_16440 at 402.115 kb on + strand, within CSW01_16440 at 402.146 kb on + strand, within CSW01_16440
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 400,137 - +0.9 400,161 + CSW01_16420 0.13 +1.3 400,179 - CSW01_16420 0.18 +0.7 400,247 + CSW01_16420 0.34 -0.1 400,283 - CSW01_16420 0.42 -0.1 400,653 + -0.9 400,660 + +1.1 400,725 + -3.5 400,726 - +0.6 400,797 + CSW01_16425 0.22 +0.3 400,854 + CSW01_16425 0.33 +0.4 400,863 + CSW01_16425 0.34 -2.4 400,863 + CSW01_16425 0.34 -0.1 400,871 - CSW01_16425 0.36 -0.4 400,871 - CSW01_16425 0.36 -0.3 400,871 - CSW01_16425 0.36 -0.8 400,975 + CSW01_16425 0.56 -1.5 400,988 - CSW01_16425 0.58 -3.6 401,085 - CSW01_16425 0.76 +0.1 401,103 + CSW01_16425 0.80 -0.7 401,111 - CSW01_16425 0.81 +0.5 401,111 - CSW01_16425 0.81 +0.0 401,150 + CSW01_16425 0.89 -0.4 401,163 + -0.5 401,225 - -0.1 401,225 - -0.5 401,225 - +0.3 401,277 - +0.4 401,277 - +2.8 401,312 + +0.8 401,314 + +0.5 401,315 + +0.6 401,323 - +0.1 401,325 + -0.4 401,325 + -0.3 401,339 - +1.6 401,406 + CSW01_16430 0.12 +0.9 401,433 + CSW01_16430 0.17 -2.5 401,496 + CSW01_16430 0.30 -0.2 401,507 + CSW01_16430 0.32 +0.2 401,552 + CSW01_16430 0.41 -0.4 401,574 + CSW01_16430 0.45 +1.3 401,574 + CSW01_16430 0.45 -2.9 401,580 + CSW01_16430 0.46 -0.6 401,582 + CSW01_16430 0.47 -0.1 401,590 - CSW01_16430 0.48 -1.1 401,673 + CSW01_16430 0.65 +0.6 401,681 - CSW01_16430 0.66 +0.1 401,681 - CSW01_16430 0.66 -0.3 401,681 - CSW01_16430 0.66 -2.4 401,708 - CSW01_16430 0.72 +0.1 401,796 - CSW01_16430 0.89 +0.1 401,841 + -0.4 401,913 - CSW01_16435 0.84 +0.4 401,933 + -0.4 401,956 + -0.3 401,956 + +0.7 401,966 + -0.2 401,966 + +0.2 401,966 + -0.9 401,966 + +0.2 401,966 + +1.4 401,966 + +0.1 401,966 + -0.2 402,063 + CSW01_16440 0.15 -1.3 402,087 - CSW01_16440 0.21 -0.2 402,087 - CSW01_16440 0.21 +0.0 402,115 + CSW01_16440 0.28 -0.0 402,146 + CSW01_16440 0.36 -0.8
Or see this region's nucleotide sequence