Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16225 and CSW01_16230 are separated by 304 nucleotides CSW01_16230 and CSW01_16235 are separated by 41 nucleotides CSW01_16235 and CSW01_16240 overlap by 19 nucleotides CSW01_16240 and CSW01_16245 are separated by 149 nucleotides CSW01_16245 and CSW01_16250 are separated by 81 nucleotides CSW01_16250 and CSW01_16255 are separated by 35 nucleotides
CSW01_16225: CSW01_16225 - hypothetical protein, at 382,788 to 383,105
_16225
CSW01_16230: CSW01_16230 - DUF645 domain-containing protein, at 383,410 to 383,592
_16230
CSW01_16235: CSW01_16235 - hypothetical protein, at 383,634 to 383,729
_16235
CSW01_16240: CSW01_16240 - hypothetical protein, at 383,711 to 384,496
_16240
CSW01_16245: CSW01_16245 - hypothetical protein, at 384,646 to 384,960
_16245
CSW01_16250: CSW01_16250 - C4-dicarboxylate ABC transporter, at 385,042 to 385,170
_16250
CSW01_16255: CSW01_16255 - hypothetical protein, at 385,206 to 385,631
_16255
Position (kb) 383
384
385 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 382.793 kb on - strand at 382.928 kb on + strand, within CSW01_16225 at 383.465 kb on - strand, within CSW01_16230 at 383.492 kb on + strand, within CSW01_16230 at 383.500 kb on - strand, within CSW01_16230 at 383.506 kb on + strand, within CSW01_16230 at 383.551 kb on - strand, within CSW01_16230 at 383.837 kb on - strand, within CSW01_16240 at 383.859 kb on - strand, within CSW01_16240 at 383.859 kb on - strand, within CSW01_16240 at 383.859 kb on - strand, within CSW01_16240 at 383.867 kb on + strand, within CSW01_16240 at 383.968 kb on - strand, within CSW01_16240 at 384.010 kb on + strand, within CSW01_16240 at 384.018 kb on - strand, within CSW01_16240 at 384.018 kb on - strand, within CSW01_16240 at 384.327 kb on + strand, within CSW01_16240 at 384.335 kb on - strand, within CSW01_16240 at 384.379 kb on + strand, within CSW01_16240 at 384.399 kb on - strand, within CSW01_16240 at 384.407 kb on + strand, within CSW01_16240 at 384.411 kb on + strand, within CSW01_16240 at 384.424 kb on - strand at 384.458 kb on - strand at 384.739 kb on - strand, within CSW01_16245 at 384.739 kb on - strand, within CSW01_16245 at 384.739 kb on - strand, within CSW01_16245 at 384.739 kb on - strand, within CSW01_16245 at 384.778 kb on + strand, within CSW01_16245 at 384.788 kb on + strand, within CSW01_16245 at 384.788 kb on + strand, within CSW01_16245 at 384.867 kb on + strand, within CSW01_16245 at 385.112 kb on + strand, within CSW01_16250 at 385.112 kb on + strand, within CSW01_16250 at 385.136 kb on - strand, within CSW01_16250 at 385.283 kb on + strand, within CSW01_16255 at 385.306 kb on - strand, within CSW01_16255 at 385.336 kb on + strand, within CSW01_16255 at 385.344 kb on - strand, within CSW01_16255 at 385.351 kb on + strand, within CSW01_16255 at 385.351 kb on + strand, within CSW01_16255 at 385.360 kb on - strand, within CSW01_16255 at 385.397 kb on - strand, within CSW01_16255
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 382,793 - +0.8 382,928 + CSW01_16225 0.44 +0.4 383,465 - CSW01_16230 0.30 +0.9 383,492 + CSW01_16230 0.45 -0.1 383,500 - CSW01_16230 0.49 -4.4 383,506 + CSW01_16230 0.52 +0.6 383,551 - CSW01_16230 0.77 +0.2 383,837 - CSW01_16240 0.16 -3.1 383,859 - CSW01_16240 0.19 +1.6 383,859 - CSW01_16240 0.19 -0.7 383,859 - CSW01_16240 0.19 -3.4 383,867 + CSW01_16240 0.20 -0.3 383,968 - CSW01_16240 0.33 +1.1 384,010 + CSW01_16240 0.38 +0.2 384,018 - CSW01_16240 0.39 -0.9 384,018 - CSW01_16240 0.39 -1.6 384,327 + CSW01_16240 0.78 +0.9 384,335 - CSW01_16240 0.79 +1.2 384,379 + CSW01_16240 0.85 +1.6 384,399 - CSW01_16240 0.88 +1.1 384,407 + CSW01_16240 0.89 +1.7 384,411 + CSW01_16240 0.89 -0.2 384,424 - -1.4 384,458 - +0.0 384,739 - CSW01_16245 0.30 +0.7 384,739 - CSW01_16245 0.30 -1.8 384,739 - CSW01_16245 0.30 -0.6 384,739 - CSW01_16245 0.30 -2.2 384,778 + CSW01_16245 0.42 -0.1 384,788 + CSW01_16245 0.45 -0.2 384,788 + CSW01_16245 0.45 -0.5 384,867 + CSW01_16245 0.70 +0.9 385,112 + CSW01_16250 0.54 +0.1 385,112 + CSW01_16250 0.54 -1.2 385,136 - CSW01_16250 0.73 +0.2 385,283 + CSW01_16255 0.18 +0.8 385,306 - CSW01_16255 0.23 -0.6 385,336 + CSW01_16255 0.31 -1.5 385,344 - CSW01_16255 0.32 +0.1 385,351 + CSW01_16255 0.34 -1.0 385,351 + CSW01_16255 0.34 -0.9 385,360 - CSW01_16255 0.36 +1.1 385,397 - CSW01_16255 0.45 -0.2
Or see this region's nucleotide sequence