Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16045

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16035 and CSW01_16040 are separated by 200 nucleotidesCSW01_16040 and CSW01_16045 are separated by 10 nucleotidesCSW01_16045 and CSW01_16050 overlap by 85 nucleotidesCSW01_16050 and CSW01_16055 are separated by 176 nucleotidesCSW01_16055 and CSW01_16060 overlap by 38 nucleotidesCSW01_16060 and CSW01_16065 are separated by 16 nucleotidesCSW01_16065 and CSW01_16070 overlap by 19 nucleotides CSW01_16035: CSW01_16035 - DUF645 domain-containing protein, at 367,160 to 367,340 _16035 CSW01_16040: CSW01_16040 - type II toxin-antitoxin system RelE/ParE family toxin, at 367,541 to 367,894 _16040 CSW01_16045: CSW01_16045 - transcriptional regulator, at 367,905 to 368,222 _16045 CSW01_16050: CSW01_16050 - DUF3265 domain-containing protein, at 368,138 to 368,329 _16050 CSW01_16055: CSW01_16055 - DUF645 domain-containing protein, at 368,506 to 368,631 _16055 CSW01_16060: CSW01_16060 - Tfp pilus assembly protein, at 368,594 to 368,710 _16060 CSW01_16065: CSW01_16065 - hypothetical protein, at 368,727 to 368,828 _16065 CSW01_16070: CSW01_16070 - isomerase, at 368,810 to 369,649 _16070 Position (kb) 367 368 369Strain fitness (log2 ratio) -3 -2 -1 0 1at 367.241 kb on + strand, within CSW01_16035at 367.241 kb on + strand, within CSW01_16035at 367.241 kb on + strand, within CSW01_16035at 367.249 kb on - strand, within CSW01_16035at 367.249 kb on - strand, within CSW01_16035at 367.249 kb on - strand, within CSW01_16035at 367.249 kb on - strand, within CSW01_16035at 367.479 kb on - strandat 367.649 kb on - strand, within CSW01_16040at 367.668 kb on + strand, within CSW01_16040at 367.668 kb on + strand, within CSW01_16040at 367.727 kb on + strand, within CSW01_16040at 367.775 kb on - strand, within CSW01_16040at 368.946 kb on + strand, within CSW01_16070at 369.005 kb on + strand, within CSW01_16070at 369.021 kb on - strand, within CSW01_16070at 369.057 kb on - strand, within CSW01_16070at 369.113 kb on - strand, within CSW01_16070

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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367,241 + CSW01_16035 0.45 +0.0
367,241 + CSW01_16035 0.45 +0.0
367,241 + CSW01_16035 0.45 -1.5
367,249 - CSW01_16035 0.49 -0.7
367,249 - CSW01_16035 0.49 +0.5
367,249 - CSW01_16035 0.49 -0.7
367,249 - CSW01_16035 0.49 +0.4
367,479 - +0.1
367,649 - CSW01_16040 0.31 +0.1
367,668 + CSW01_16040 0.36 -0.2
367,668 + CSW01_16040 0.36 -0.5
367,727 + CSW01_16040 0.53 -2.9
367,775 - CSW01_16040 0.66 -0.3
368,946 + CSW01_16070 0.16 -1.4
369,005 + CSW01_16070 0.23 +0.8
369,021 - CSW01_16070 0.25 -2.3
369,057 - CSW01_16070 0.29 -0.2
369,113 - CSW01_16070 0.36 -2.5

Or see this region's nucleotide sequence