Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15375

Experiment: ICP1_phage_23.5_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_15370 and CSW01_15375 overlap by 1 nucleotidesCSW01_15375 and CSW01_15380 are separated by 1 nucleotidesCSW01_15380 and CSW01_15385 are separated by 268 nucleotides CSW01_15370: CSW01_15370 - hypothetical protein, at 304,226 to 304,756 _15370 CSW01_15375: CSW01_15375 - hypothetical protein, at 304,756 to 305,427 _15375 CSW01_15380: CSW01_15380 - hypothetical protein, at 305,429 to 305,779 _15380 CSW01_15385: CSW01_15385 - threonine--tRNA ligase, at 306,048 to 307,976 _15385 Position (kb) 304 305 306Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 303.781 kb on + strandat 303.781 kb on + strandat 303.789 kb on - strandat 303.791 kb on + strandat 303.791 kb on + strandat 303.799 kb on - strandat 303.823 kb on - strandat 303.834 kb on + strandat 303.834 kb on - strandat 303.859 kb on + strandat 303.930 kb on - strandat 303.948 kb on - strandat 303.975 kb on + strandat 303.975 kb on + strandat 303.982 kb on + strandat 303.983 kb on - strandat 304.358 kb on - strand, within CSW01_15370at 304.370 kb on + strand, within CSW01_15370at 304.390 kb on - strand, within CSW01_15370at 304.393 kb on - strand, within CSW01_15370at 304.518 kb on + strand, within CSW01_15370at 304.518 kb on + strand, within CSW01_15370at 304.526 kb on - strand, within CSW01_15370at 304.526 kb on - strand, within CSW01_15370at 304.526 kb on - strand, within CSW01_15370at 304.530 kb on + strand, within CSW01_15370at 304.550 kb on + strand, within CSW01_15370at 304.558 kb on - strand, within CSW01_15370at 304.571 kb on - strand, within CSW01_15370at 304.610 kb on + strand, within CSW01_15370at 304.618 kb on - strand, within CSW01_15370at 304.618 kb on - strand, within CSW01_15370at 304.640 kb on - strand, within CSW01_15370at 304.640 kb on - strand, within CSW01_15370at 304.640 kb on - strand, within CSW01_15370at 304.640 kb on - strand, within CSW01_15370at 304.653 kb on - strand, within CSW01_15370at 304.684 kb on - strand, within CSW01_15370at 304.771 kb on - strandat 304.778 kb on - strandat 304.790 kb on + strandat 304.955 kb on - strand, within CSW01_15375at 304.962 kb on + strand, within CSW01_15375at 305.004 kb on - strand, within CSW01_15375at 305.024 kb on - strand, within CSW01_15375at 305.194 kb on + strand, within CSW01_15375at 305.202 kb on - strand, within CSW01_15375at 305.202 kb on - strand, within CSW01_15375at 305.202 kb on - strand, within CSW01_15375at 305.253 kb on - strand, within CSW01_15375at 305.253 kb on - strand, within CSW01_15375at 305.286 kb on + strand, within CSW01_15375at 305.306 kb on + strand, within CSW01_15375at 305.313 kb on - strand, within CSW01_15375at 305.314 kb on - strand, within CSW01_15375at 305.326 kb on + strand, within CSW01_15375at 305.456 kb on + strandat 305.473 kb on - strand, within CSW01_15380at 305.473 kb on - strand, within CSW01_15380at 305.496 kb on - strand, within CSW01_15380at 305.569 kb on + strand, within CSW01_15380at 305.574 kb on + strand, within CSW01_15380at 305.577 kb on - strand, within CSW01_15380at 305.582 kb on + strand, within CSW01_15380at 305.590 kb on - strand, within CSW01_15380at 305.612 kb on + strand, within CSW01_15380at 305.640 kb on - strand, within CSW01_15380at 305.671 kb on - strand, within CSW01_15380at 305.768 kb on - strandat 305.776 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
remove
303,781 + -0.0
303,781 + +0.7
303,789 - +0.1
303,791 + -2.3
303,791 + +1.0
303,799 - -0.3
303,823 - -0.7
303,834 + +0.3
303,834 - -1.2
303,859 + +0.7
303,930 - +1.3
303,948 - -0.3
303,975 + -0.2
303,975 + +1.2
303,982 + -4.2
303,983 - -0.6
304,358 - CSW01_15370 0.25 +0.5
304,370 + CSW01_15370 0.27 +0.7
304,390 - CSW01_15370 0.31 +1.0
304,393 - CSW01_15370 0.31 -2.2
304,518 + CSW01_15370 0.55 +1.1
304,518 + CSW01_15370 0.55 +0.6
304,526 - CSW01_15370 0.56 -1.0
304,526 - CSW01_15370 0.56 -1.7
304,526 - CSW01_15370 0.56 +0.5
304,530 + CSW01_15370 0.57 -0.5
304,550 + CSW01_15370 0.61 +1.1
304,558 - CSW01_15370 0.63 -1.9
304,571 - CSW01_15370 0.65 +0.4
304,610 + CSW01_15370 0.72 +0.1
304,618 - CSW01_15370 0.74 +0.8
304,618 - CSW01_15370 0.74 -0.7
304,640 - CSW01_15370 0.78 -0.5
304,640 - CSW01_15370 0.78 -0.2
304,640 - CSW01_15370 0.78 -0.1
304,640 - CSW01_15370 0.78 -0.4
304,653 - CSW01_15370 0.80 -0.2
304,684 - CSW01_15370 0.86 +0.4
304,771 - -3.6
304,778 - -1.9
304,790 + -0.6
304,955 - CSW01_15375 0.30 -2.6
304,962 + CSW01_15375 0.31 -3.1
305,004 - CSW01_15375 0.37 +0.8
305,024 - CSW01_15375 0.40 +0.6
305,194 + CSW01_15375 0.65 -0.1
305,202 - CSW01_15375 0.66 -0.2
305,202 - CSW01_15375 0.66 +0.5
305,202 - CSW01_15375 0.66 +0.5
305,253 - CSW01_15375 0.74 +0.7
305,253 - CSW01_15375 0.74 -0.1
305,286 + CSW01_15375 0.79 -1.8
305,306 + CSW01_15375 0.82 +0.1
305,313 - CSW01_15375 0.83 -1.2
305,314 - CSW01_15375 0.83 -1.8
305,326 + CSW01_15375 0.85 +0.1
305,456 + -2.3
305,473 - CSW01_15380 0.13 -0.1
305,473 - CSW01_15380 0.13 -3.8
305,496 - CSW01_15380 0.19 +0.4
305,569 + CSW01_15380 0.40 -2.6
305,574 + CSW01_15380 0.41 +1.0
305,577 - CSW01_15380 0.42 -0.3
305,582 + CSW01_15380 0.44 -3.4
305,590 - CSW01_15380 0.46 -0.4
305,612 + CSW01_15380 0.52 +0.6
305,640 - CSW01_15380 0.60 -1.0
305,671 - CSW01_15380 0.69 +0.4
305,768 - -1.5
305,776 - +0.8

Or see this region's nucleotide sequence