Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15300

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15295 and CSW01_15300 are separated by 164 nucleotidesCSW01_15300 and CSW01_15305 are separated by 177 nucleotidesCSW01_15305 and CSW01_15310 are separated by 94 nucleotides CSW01_15295: CSW01_15295 - aspartate aminotransferase family protein, at 286,538 to 288,211 _15295 CSW01_15300: CSW01_15300 - D-alanyl-D-alanine carboxypeptidase, at 288,376 to 289,545 _15300 CSW01_15305: CSW01_15305 - XRE family transcriptional regulator, at 289,723 to 290,070 _15305 CSW01_15310: CSW01_15310 - exoribonuclease R, at 290,165 to 290,599 _15310 Position (kb) 288 289 290Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 287.425 kb on - strand, within CSW01_15295at 287.661 kb on - strand, within CSW01_15295at 287.661 kb on - strand, within CSW01_15295at 287.742 kb on + strand, within CSW01_15295at 287.764 kb on + strand, within CSW01_15295at 288.027 kb on - strand, within CSW01_15295at 288.064 kb on - strandat 288.064 kb on - strandat 288.087 kb on + strandat 288.095 kb on - strandat 288.095 kb on - strandat 288.107 kb on + strandat 288.110 kb on - strandat 288.115 kb on - strandat 288.154 kb on + strandat 288.217 kb on + strandat 288.217 kb on + strandat 288.235 kb on - strandat 288.240 kb on - strandat 288.244 kb on + strandat 288.263 kb on + strandat 288.263 kb on + strandat 288.271 kb on - strandat 288.294 kb on - strandat 288.294 kb on - strandat 288.309 kb on + strandat 288.343 kb on - strandat 288.517 kb on + strand, within CSW01_15300at 288.523 kb on + strand, within CSW01_15300at 288.648 kb on - strand, within CSW01_15300at 288.867 kb on + strand, within CSW01_15300at 288.868 kb on + strand, within CSW01_15300at 288.898 kb on + strand, within CSW01_15300at 288.898 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.906 kb on - strand, within CSW01_15300at 288.906 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.925 kb on + strand, within CSW01_15300at 288.989 kb on - strand, within CSW01_15300at 289.024 kb on - strand, within CSW01_15300at 289.032 kb on - strand, within CSW01_15300at 289.069 kb on + strand, within CSW01_15300at 289.074 kb on + strand, within CSW01_15300at 289.077 kb on - strand, within CSW01_15300at 289.082 kb on - strand, within CSW01_15300at 289.087 kb on + strand, within CSW01_15300at 289.087 kb on + strand, within CSW01_15300at 289.087 kb on + strand, within CSW01_15300at 289.088 kb on + strand, within CSW01_15300at 289.093 kb on + strand, within CSW01_15300at 289.093 kb on + strand, within CSW01_15300at 289.093 kb on + strand, within CSW01_15300at 289.133 kb on + strand, within CSW01_15300at 289.166 kb on + strand, within CSW01_15300at 289.194 kb on + strand, within CSW01_15300at 289.196 kb on + strand, within CSW01_15300at 289.291 kb on + strand, within CSW01_15300at 289.299 kb on - strand, within CSW01_15300at 289.299 kb on - strand, within CSW01_15300at 289.299 kb on - strand, within CSW01_15300at 289.301 kb on + strand, within CSW01_15300at 289.316 kb on + strand, within CSW01_15300at 289.316 kb on + strand, within CSW01_15300at 289.316 kb on + strand, within CSW01_15300at 289.316 kb on + strand, within CSW01_15300at 289.324 kb on - strand, within CSW01_15300at 289.324 kb on - strand, within CSW01_15300at 289.324 kb on - strand, within CSW01_15300at 289.401 kb on - strand, within CSW01_15300at 289.493 kb on + strandat 289.509 kb on - strandat 289.514 kb on + strandat 289.514 kb on + strandat 289.514 kb on + strandat 289.515 kb on + strandat 289.522 kb on - strandat 289.532 kb on - strandat 289.627 kb on + strandat 289.633 kb on - strandat 289.633 kb on - strandat 289.656 kb on - strandat 289.684 kb on + strandat 289.743 kb on + strandat 289.743 kb on + strandat 289.745 kb on + strandat 289.751 kb on - strandat 289.872 kb on + strand, within CSW01_15305at 289.892 kb on + strand, within CSW01_15305at 289.913 kb on - strand, within CSW01_15305at 289.960 kb on + strand, within CSW01_15305at 289.960 kb on + strand, within CSW01_15305at 289.960 kb on + strand, within CSW01_15305at 289.960 kb on + strand, within CSW01_15305at 289.968 kb on - strand, within CSW01_15305at 289.968 kb on - strand, within CSW01_15305at 290.086 kb on - strandat 290.342 kb on - strand, within CSW01_15310at 290.342 kb on - strand, within CSW01_15310

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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287,425 - CSW01_15295 0.53 +0.4
287,661 - CSW01_15295 0.67 +1.4
287,661 - CSW01_15295 0.67 +0.4
287,742 + CSW01_15295 0.72 +1.5
287,764 + CSW01_15295 0.73 -0.5
288,027 - CSW01_15295 0.89 +0.8
288,064 - -3.2
288,064 - +0.4
288,087 + -0.0
288,095 - -0.5
288,095 - +0.0
288,107 + +0.2
288,110 - -0.9
288,115 - -0.6
288,154 + -1.4
288,217 + +0.1
288,217 + +0.1
288,235 - +0.8
288,240 - +0.6
288,244 + -0.2
288,263 + -1.4
288,263 + -0.5
288,271 - -1.5
288,294 - -1.0
288,294 - +2.6
288,309 + +0.9
288,343 - -0.2
288,517 + CSW01_15300 0.12 -1.4
288,523 + CSW01_15300 0.13 -0.7
288,648 - CSW01_15300 0.23 +0.3
288,867 + CSW01_15300 0.42 +0.7
288,868 + CSW01_15300 0.42 +0.4
288,898 + CSW01_15300 0.45 +0.8
288,898 + CSW01_15300 0.45 +1.1
288,900 + CSW01_15300 0.45 +0.5
288,900 + CSW01_15300 0.45 -0.4
288,900 + CSW01_15300 0.45 +0.9
288,900 + CSW01_15300 0.45 +0.2
288,900 + CSW01_15300 0.45 +0.3
288,900 + CSW01_15300 0.45 +1.0
288,900 + CSW01_15300 0.45 +1.7
288,900 + CSW01_15300 0.45 -0.2
288,906 - CSW01_15300 0.45 +0.5
288,906 - CSW01_15300 0.45 +1.9
288,908 - CSW01_15300 0.45 +0.1
288,908 - CSW01_15300 0.45 +0.3
288,908 - CSW01_15300 0.45 -1.1
288,908 - CSW01_15300 0.45 -0.9
288,908 - CSW01_15300 0.45 +1.0
288,908 - CSW01_15300 0.45 -1.5
288,908 - CSW01_15300 0.45 -3.1
288,908 - CSW01_15300 0.45 +1.0
288,908 - CSW01_15300 0.45 -0.3
288,910 + CSW01_15300 0.46 +1.0
288,910 + CSW01_15300 0.46 -0.5
288,910 + CSW01_15300 0.46 +0.3
288,910 + CSW01_15300 0.46 +0.5
288,910 + CSW01_15300 0.46 +0.4
288,910 + CSW01_15300 0.46 +0.5
288,910 + CSW01_15300 0.46 -0.2
288,910 + CSW01_15300 0.46 -1.9
288,910 + CSW01_15300 0.46 -1.4
288,910 + CSW01_15300 0.46 -1.1
288,910 + CSW01_15300 0.46 -0.2
288,910 + CSW01_15300 0.46 +0.4
288,910 + CSW01_15300 0.46 -0.4
288,910 + CSW01_15300 0.46 +1.6
288,910 + CSW01_15300 0.46 -1.4
288,910 + CSW01_15300 0.46 +0.6
288,910 + CSW01_15300 0.46 -1.4
288,910 + CSW01_15300 0.46 +0.1
288,918 - CSW01_15300 0.46 -2.1
288,918 - CSW01_15300 0.46 +0.2
288,918 - CSW01_15300 0.46 -0.1
288,918 - CSW01_15300 0.46 -1.2
288,918 - CSW01_15300 0.46 -0.3
288,918 - CSW01_15300 0.46 -1.0
288,918 - CSW01_15300 0.46 -0.7
288,918 - CSW01_15300 0.46 -0.6
288,918 - CSW01_15300 0.46 -0.6
288,918 - CSW01_15300 0.46 +1.2
288,918 - CSW01_15300 0.46 -0.8
288,918 - CSW01_15300 0.46 -0.2
288,918 - CSW01_15300 0.46 +0.6
288,918 - CSW01_15300 0.46 -1.7
288,925 + CSW01_15300 0.47 +0.2
288,989 - CSW01_15300 0.52 -1.1
289,024 - CSW01_15300 0.55 -0.8
289,032 - CSW01_15300 0.56 -1.1
289,069 + CSW01_15300 0.59 +1.9
289,074 + CSW01_15300 0.60 -0.8
289,077 - CSW01_15300 0.60 +2.9
289,082 - CSW01_15300 0.60 -1.6
289,087 + CSW01_15300 0.61 +1.4
289,087 + CSW01_15300 0.61 -2.1
289,087 + CSW01_15300 0.61 +1.5
289,088 + CSW01_15300 0.61 +1.6
289,093 + CSW01_15300 0.61 +1.2
289,093 + CSW01_15300 0.61 -0.4
289,093 + CSW01_15300 0.61 +0.8
289,133 + CSW01_15300 0.65 +1.3
289,166 + CSW01_15300 0.68 +0.7
289,194 + CSW01_15300 0.70 +0.0
289,196 + CSW01_15300 0.70 +0.2
289,291 + CSW01_15300 0.78 -0.9
289,299 - CSW01_15300 0.79 +0.1
289,299 - CSW01_15300 0.79 +1.2
289,299 - CSW01_15300 0.79 -1.8
289,301 + CSW01_15300 0.79 +1.0
289,316 + CSW01_15300 0.80 +0.3
289,316 + CSW01_15300 0.80 +1.2
289,316 + CSW01_15300 0.80 +2.0
289,316 + CSW01_15300 0.80 -3.2
289,324 - CSW01_15300 0.81 -1.3
289,324 - CSW01_15300 0.81 +1.5
289,324 - CSW01_15300 0.81 +0.9
289,401 - CSW01_15300 0.88 -2.5
289,493 + -1.9
289,509 - -2.1
289,514 + +1.6
289,514 + -0.2
289,514 + -0.0
289,515 + -2.4
289,522 - +0.4
289,532 - -2.0
289,627 + -3.2
289,633 - -0.2
289,633 - -1.8
289,656 - +0.1
289,684 + -1.6
289,743 + -1.7
289,743 + -2.6
289,745 + -2.7
289,751 - +1.1
289,872 + CSW01_15305 0.43 +0.9
289,892 + CSW01_15305 0.49 +1.5
289,913 - CSW01_15305 0.55 -0.5
289,960 + CSW01_15305 0.68 -0.9
289,960 + CSW01_15305 0.68 -2.4
289,960 + CSW01_15305 0.68 -0.6
289,960 + CSW01_15305 0.68 -1.7
289,968 - CSW01_15305 0.70 -0.8
289,968 - CSW01_15305 0.70 -2.0
290,086 - -1.6
290,342 - CSW01_15310 0.41 +1.0
290,342 - CSW01_15310 0.41 +0.3

Or see this region's nucleotide sequence