Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15280

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15270 and CSW01_15275 are separated by 183 nucleotidesCSW01_15275 and CSW01_15280 are separated by 59 nucleotidesCSW01_15280 and CSW01_15285 are separated by 101 nucleotides CSW01_15270: CSW01_15270 - transcriptional regulator, at 280,492 to 281,670 _15270 CSW01_15275: CSW01_15275 - hypothetical protein, at 281,854 to 282,234 _15275 CSW01_15280: CSW01_15280 - AraC family transcriptional regulator, at 282,294 to 283,067 _15280 CSW01_15285: CSW01_15285 - MFS transporter, at 283,169 to 284,308 _15285 Position (kb) 282 283 284Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 281.314 kb on - strand, within CSW01_15270at 281.322 kb on + strand, within CSW01_15270at 281.332 kb on - strand, within CSW01_15270at 281.341 kb on + strand, within CSW01_15270at 281.341 kb on + strand, within CSW01_15270at 281.349 kb on - strand, within CSW01_15270at 281.436 kb on - strand, within CSW01_15270at 281.436 kb on - strand, within CSW01_15270at 281.487 kb on + strand, within CSW01_15270at 281.487 kb on + strand, within CSW01_15270at 281.487 kb on + strand, within CSW01_15270at 281.495 kb on - strand, within CSW01_15270at 281.495 kb on - strand, within CSW01_15270at 281.495 kb on - strand, within CSW01_15270at 281.507 kb on + strand, within CSW01_15270at 281.507 kb on + strand, within CSW01_15270at 281.507 kb on + strand, within CSW01_15270at 281.507 kb on - strand, within CSW01_15270at 281.549 kb on - strand, within CSW01_15270at 281.590 kb on + strandat 281.609 kb on + strandat 281.609 kb on + strandat 281.617 kb on - strandat 281.619 kb on + strandat 281.632 kb on - strandat 281.642 kb on - strandat 281.706 kb on + strandat 281.719 kb on - strandat 281.721 kb on + strandat 281.721 kb on + strandat 281.721 kb on + strandat 281.721 kb on + strandat 281.722 kb on - strandat 281.729 kb on - strandat 281.729 kb on - strandat 281.729 kb on - strandat 281.844 kb on + strandat 281.886 kb on + strandat 281.931 kb on - strand, within CSW01_15275at 281.931 kb on - strand, within CSW01_15275at 281.931 kb on - strand, within CSW01_15275at 281.986 kb on + strand, within CSW01_15275at 281.991 kb on + strand, within CSW01_15275at 281.991 kb on + strand, within CSW01_15275at 281.991 kb on + strand, within CSW01_15275at 281.991 kb on + strand, within CSW01_15275at 281.999 kb on - strand, within CSW01_15275at 281.999 kb on - strand, within CSW01_15275at 282.167 kb on + strand, within CSW01_15275at 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.323 kb on - strandat 282.323 kb on - strandat 282.323 kb on - strandat 282.323 kb on - strandat 282.323 kb on - strandat 282.523 kb on + strand, within CSW01_15280at 282.537 kb on - strand, within CSW01_15280at 282.644 kb on - strand, within CSW01_15280at 282.654 kb on - strand, within CSW01_15280at 282.692 kb on + strand, within CSW01_15280at 282.692 kb on + strand, within CSW01_15280at 282.692 kb on + strand, within CSW01_15280at 282.697 kb on + strand, within CSW01_15280at 282.700 kb on - strand, within CSW01_15280at 282.700 kb on - strand, within CSW01_15280at 282.712 kb on - strand, within CSW01_15280at 282.712 kb on - strand, within CSW01_15280at 282.773 kb on + strand, within CSW01_15280at 282.783 kb on + strand, within CSW01_15280at 282.791 kb on - strand, within CSW01_15280at 282.805 kb on - strand, within CSW01_15280at 282.839 kb on - strand, within CSW01_15280at 282.839 kb on - strand, within CSW01_15280at 282.895 kb on - strand, within CSW01_15280at 282.906 kb on + strand, within CSW01_15280at 282.914 kb on - strand, within CSW01_15280at 282.971 kb on + strand, within CSW01_15280at 283.027 kb on - strandat 283.047 kb on - strandat 283.055 kb on - strandat 283.111 kb on + strandat 283.116 kb on + strandat 283.125 kb on + strandat 283.125 kb on + strandat 283.125 kb on + strandat 283.133 kb on - strandat 283.133 kb on - strandat 283.133 kb on - strandat 283.133 kb on - strandat 283.155 kb on + strandat 283.179 kb on + strandat 283.255 kb on - strandat 283.281 kb on + strandat 283.303 kb on - strand, within CSW01_15285at 283.385 kb on + strand, within CSW01_15285at 283.451 kb on + strand, within CSW01_15285at 283.497 kb on + strand, within CSW01_15285at 283.531 kb on + strand, within CSW01_15285at 283.539 kb on - strand, within CSW01_15285at 283.547 kb on - strand, within CSW01_15285at 283.585 kb on + strand, within CSW01_15285at 283.595 kb on + strand, within CSW01_15285at 283.598 kb on - strand, within CSW01_15285at 283.603 kb on - strand, within CSW01_15285at 283.603 kb on - strand, within CSW01_15285at 283.603 kb on - strand, within CSW01_15285at 283.731 kb on - strand, within CSW01_15285at 283.771 kb on + strand, within CSW01_15285at 283.813 kb on - strand, within CSW01_15285at 283.883 kb on - strand, within CSW01_15285at 283.899 kb on + strand, within CSW01_15285at 283.915 kb on + strand, within CSW01_15285at 283.972 kb on - strand, within CSW01_15285at 283.981 kb on + strand, within CSW01_15285at 284.007 kb on - strand, within CSW01_15285

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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281,314 - CSW01_15270 0.70 -1.3
281,322 + CSW01_15270 0.70 -0.3
281,332 - CSW01_15270 0.71 +0.6
281,341 + CSW01_15270 0.72 -0.9
281,341 + CSW01_15270 0.72 +0.1
281,349 - CSW01_15270 0.73 -1.4
281,436 - CSW01_15270 0.80 -0.8
281,436 - CSW01_15270 0.80 -0.6
281,487 + CSW01_15270 0.84 +0.9
281,487 + CSW01_15270 0.84 +0.8
281,487 + CSW01_15270 0.84 +0.1
281,495 - CSW01_15270 0.85 -1.4
281,495 - CSW01_15270 0.85 +1.2
281,495 - CSW01_15270 0.85 -1.0
281,507 + CSW01_15270 0.86 +1.4
281,507 + CSW01_15270 0.86 +0.2
281,507 + CSW01_15270 0.86 -2.6
281,507 - CSW01_15270 0.86 -1.7
281,549 - CSW01_15270 0.90 +1.5
281,590 + -1.4
281,609 + +0.1
281,609 + -1.8
281,617 - +1.0
281,619 + -0.3
281,632 - -0.6
281,642 - -1.2
281,706 + +2.2
281,719 - -1.3
281,721 + +0.5
281,721 + -1.8
281,721 + +0.8
281,721 + -0.7
281,722 - +0.8
281,729 - -0.0
281,729 - +0.3
281,729 - +0.1
281,844 + -0.9
281,886 + +0.2
281,931 - CSW01_15275 0.20 +1.8
281,931 - CSW01_15275 0.20 -0.4
281,931 - CSW01_15275 0.20 -0.7
281,986 + CSW01_15275 0.35 +0.8
281,991 + CSW01_15275 0.36 -1.9
281,991 + CSW01_15275 0.36 +1.4
281,991 + CSW01_15275 0.36 +2.6
281,991 + CSW01_15275 0.36 -2.2
281,999 - CSW01_15275 0.38 -0.5
281,999 - CSW01_15275 0.38 -0.6
282,167 + CSW01_15275 0.82 -0.1
282,315 + +0.1
282,315 + -0.5
282,315 + -0.0
282,315 + -1.5
282,315 + -3.5
282,315 + +1.0
282,315 + -1.1
282,315 + +0.7
282,323 - -2.6
282,323 - +0.2
282,323 - -0.6
282,323 - +0.1
282,323 - +0.6
282,523 + CSW01_15280 0.30 -0.4
282,537 - CSW01_15280 0.31 +0.1
282,644 - CSW01_15280 0.45 +0.4
282,654 - CSW01_15280 0.47 -0.3
282,692 + CSW01_15280 0.51 -1.8
282,692 + CSW01_15280 0.51 -1.4
282,692 + CSW01_15280 0.51 +0.4
282,697 + CSW01_15280 0.52 +0.0
282,700 - CSW01_15280 0.52 -3.3
282,700 - CSW01_15280 0.52 -0.3
282,712 - CSW01_15280 0.54 +0.4
282,712 - CSW01_15280 0.54 +0.2
282,773 + CSW01_15280 0.62 -3.3
282,783 + CSW01_15280 0.63 -2.3
282,791 - CSW01_15280 0.64 +0.7
282,805 - CSW01_15280 0.66 -0.5
282,839 - CSW01_15280 0.70 -0.7
282,839 - CSW01_15280 0.70 -1.0
282,895 - CSW01_15280 0.78 +0.0
282,906 + CSW01_15280 0.79 +1.5
282,914 - CSW01_15280 0.80 -0.2
282,971 + CSW01_15280 0.87 +0.1
283,027 - -0.5
283,047 - -0.4
283,055 - +0.7
283,111 + +0.6
283,116 + +0.6
283,125 + -2.4
283,125 + -0.2
283,125 + +0.1
283,133 - -0.1
283,133 - +0.9
283,133 - +0.2
283,133 - +1.3
283,155 + -0.4
283,179 + -0.3
283,255 - +0.6
283,281 + +1.2
283,303 - CSW01_15285 0.12 -1.5
283,385 + CSW01_15285 0.19 -0.2
283,451 + CSW01_15285 0.25 +0.3
283,497 + CSW01_15285 0.29 +1.0
283,531 + CSW01_15285 0.32 -0.4
283,539 - CSW01_15285 0.32 -2.1
283,547 - CSW01_15285 0.33 -3.4
283,585 + CSW01_15285 0.36 +1.0
283,595 + CSW01_15285 0.37 -1.7
283,598 - CSW01_15285 0.38 +0.8
283,603 - CSW01_15285 0.38 +0.3
283,603 - CSW01_15285 0.38 -0.3
283,603 - CSW01_15285 0.38 +0.6
283,731 - CSW01_15285 0.49 +0.9
283,771 + CSW01_15285 0.53 +0.4
283,813 - CSW01_15285 0.56 +0.2
283,883 - CSW01_15285 0.63 -2.7
283,899 + CSW01_15285 0.64 -1.3
283,915 + CSW01_15285 0.65 -3.3
283,972 - CSW01_15285 0.70 +1.5
283,981 + CSW01_15285 0.71 +1.1
284,007 - CSW01_15285 0.74 +0.4

Or see this region's nucleotide sequence