Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15265

Experiment: ICP1_phage_23.5_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_15255 and CSW01_15260 are separated by 109 nucleotidesCSW01_15260 and CSW01_15265 are separated by 105 nucleotidesCSW01_15265 and CSW01_15270 are separated by 10 nucleotides CSW01_15255: CSW01_15255 - copper-binding protein, at 278,804 to 279,313 _15255 CSW01_15260: CSW01_15260 - hypothetical protein, at 279,423 to 279,833 _15260 CSW01_15265: CSW01_15265 - N-acetyltransferase, at 279,939 to 280,481 _15265 CSW01_15270: CSW01_15270 - transcriptional regulator, at 280,492 to 281,670 _15270 Position (kb) 279 280 281Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 278.942 kb on + strand, within CSW01_15255at 279.078 kb on - strand, within CSW01_15255at 279.269 kb on - strandat 279.296 kb on - strandat 279.346 kb on - strandat 279.463 kb on - strandat 279.514 kb on - strand, within CSW01_15260at 279.608 kb on + strand, within CSW01_15260at 279.608 kb on + strand, within CSW01_15260at 279.608 kb on + strand, within CSW01_15260at 279.609 kb on - strand, within CSW01_15260at 279.623 kb on + strand, within CSW01_15260at 279.630 kb on + strand, within CSW01_15260at 279.749 kb on - strand, within CSW01_15260at 279.749 kb on - strand, within CSW01_15260at 279.790 kb on - strand, within CSW01_15260at 279.792 kb on + strand, within CSW01_15260at 279.805 kb on - strandat 279.919 kb on - strandat 279.966 kb on - strandat 280.050 kb on + strand, within CSW01_15265at 280.050 kb on + strand, within CSW01_15265at 280.133 kb on - strand, within CSW01_15265at 280.138 kb on - strand, within CSW01_15265at 280.176 kb on + strand, within CSW01_15265at 280.176 kb on + strand, within CSW01_15265at 280.176 kb on + strand, within CSW01_15265at 280.184 kb on - strand, within CSW01_15265at 280.194 kb on + strand, within CSW01_15265at 280.216 kb on + strand, within CSW01_15265at 280.402 kb on - strand, within CSW01_15265at 280.516 kb on + strandat 280.574 kb on + strandat 280.643 kb on - strand, within CSW01_15270at 280.667 kb on - strand, within CSW01_15270at 280.799 kb on - strand, within CSW01_15270at 280.821 kb on + strand, within CSW01_15270at 280.862 kb on - strand, within CSW01_15270at 280.874 kb on + strand, within CSW01_15270at 280.906 kb on - strand, within CSW01_15270at 280.963 kb on + strand, within CSW01_15270at 280.984 kb on + strand, within CSW01_15270at 280.984 kb on + strand, within CSW01_15270at 280.992 kb on - strand, within CSW01_15270at 280.995 kb on + strand, within CSW01_15270at 281.036 kb on + strand, within CSW01_15270at 281.036 kb on + strand, within CSW01_15270at 281.044 kb on - strand, within CSW01_15270at 281.163 kb on - strand, within CSW01_15270at 281.163 kb on - strand, within CSW01_15270at 281.173 kb on - strand, within CSW01_15270at 281.179 kb on + strand, within CSW01_15270at 281.179 kb on + strand, within CSW01_15270at 281.279 kb on + strand, within CSW01_15270at 281.314 kb on - strand, within CSW01_15270at 281.322 kb on + strand, within CSW01_15270at 281.332 kb on - strand, within CSW01_15270at 281.341 kb on + strand, within CSW01_15270at 281.341 kb on + strand, within CSW01_15270at 281.349 kb on - strand, within CSW01_15270at 281.436 kb on - strand, within CSW01_15270at 281.436 kb on - strand, within CSW01_15270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
remove
278,942 + CSW01_15255 0.27 +1.1
279,078 - CSW01_15255 0.54 +2.3
279,269 - +0.4
279,296 - +0.5
279,346 - -0.0
279,463 - -3.7
279,514 - CSW01_15260 0.22 -1.6
279,608 + CSW01_15260 0.45 -0.1
279,608 + CSW01_15260 0.45 -2.0
279,608 + CSW01_15260 0.45 -1.5
279,609 - CSW01_15260 0.45 -3.2
279,623 + CSW01_15260 0.49 -1.9
279,630 + CSW01_15260 0.50 +0.5
279,749 - CSW01_15260 0.79 -0.7
279,749 - CSW01_15260 0.79 -2.4
279,790 - CSW01_15260 0.89 +0.2
279,792 + CSW01_15260 0.90 +0.7
279,805 - +0.6
279,919 - +1.4
279,966 - +0.9
280,050 + CSW01_15265 0.20 +1.3
280,050 + CSW01_15265 0.20 +1.5
280,133 - CSW01_15265 0.36 -2.4
280,138 - CSW01_15265 0.37 +1.4
280,176 + CSW01_15265 0.44 +1.4
280,176 + CSW01_15265 0.44 +0.5
280,176 + CSW01_15265 0.44 +0.5
280,184 - CSW01_15265 0.45 +0.8
280,194 + CSW01_15265 0.47 +2.2
280,216 + CSW01_15265 0.51 -3.6
280,402 - CSW01_15265 0.85 +0.6
280,516 + +1.0
280,574 + +0.4
280,643 - CSW01_15270 0.13 +0.2
280,667 - CSW01_15270 0.15 +0.8
280,799 - CSW01_15270 0.26 +0.3
280,821 + CSW01_15270 0.28 +0.6
280,862 - CSW01_15270 0.31 -1.4
280,874 + CSW01_15270 0.32 -0.6
280,906 - CSW01_15270 0.35 -1.1
280,963 + CSW01_15270 0.40 +1.9
280,984 + CSW01_15270 0.42 -0.5
280,984 + CSW01_15270 0.42 +2.1
280,992 - CSW01_15270 0.42 +0.4
280,995 + CSW01_15270 0.43 -1.3
281,036 + CSW01_15270 0.46 -0.9
281,036 + CSW01_15270 0.46 -2.9
281,044 - CSW01_15270 0.47 -0.0
281,163 - CSW01_15270 0.57 +0.1
281,163 - CSW01_15270 0.57 +0.1
281,173 - CSW01_15270 0.58 -0.8
281,179 + CSW01_15270 0.58 +0.1
281,179 + CSW01_15270 0.58 -0.0
281,279 + CSW01_15270 0.67 -0.1
281,314 - CSW01_15270 0.70 -1.3
281,322 + CSW01_15270 0.70 -0.3
281,332 - CSW01_15270 0.71 +0.6
281,341 + CSW01_15270 0.72 -0.9
281,341 + CSW01_15270 0.72 +0.1
281,349 - CSW01_15270 0.73 -1.4
281,436 - CSW01_15270 0.80 -0.8
281,436 - CSW01_15270 0.80 -0.6

Or see this region's nucleotide sequence