Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15240

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15230 and CSW01_15235 are separated by 88 nucleotidesCSW01_15235 and CSW01_15240 overlap by 4 nucleotidesCSW01_15240 and CSW01_15245 overlap by 25 nucleotides CSW01_15230: CSW01_15230 - glycosyl hydrolase, at 272,811 to 274,977 _15230 CSW01_15235: CSW01_15235 - DUF2861 domain-containing protein, at 275,066 to 275,896 _15235 CSW01_15240: CSW01_15240 - DNA-binding response regulator, at 275,893 to 276,564 _15240 CSW01_15245: CSW01_15245 - histidine kinase, at 276,540 to 277,994 _15245 Position (kb) 275 276 277Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 274.893 kb on + strandat 274.905 kb on + strandat 274.905 kb on + strandat 274.913 kb on - strandat 274.913 kb on - strandat 274.913 kb on - strandat 274.913 kb on - strandat 274.913 kb on - strandat 274.913 kb on - strandat 274.925 kb on - strandat 274.932 kb on - strandat 274.932 kb on - strandat 274.986 kb on + strandat 275.000 kb on - strandat 275.139 kb on - strandat 275.143 kb on + strandat 275.151 kb on - strand, within CSW01_15235at 275.151 kb on - strand, within CSW01_15235at 275.166 kb on - strand, within CSW01_15235at 275.221 kb on + strand, within CSW01_15235at 275.270 kb on + strand, within CSW01_15235at 275.270 kb on + strand, within CSW01_15235at 275.270 kb on + strand, within CSW01_15235at 275.278 kb on - strand, within CSW01_15235at 275.323 kb on - strand, within CSW01_15235at 275.332 kb on - strand, within CSW01_15235at 275.361 kb on + strand, within CSW01_15235at 275.473 kb on + strand, within CSW01_15235at 275.473 kb on + strand, within CSW01_15235at 275.474 kb on + strand, within CSW01_15235at 275.481 kb on - strand, within CSW01_15235at 275.577 kb on + strand, within CSW01_15235at 275.618 kb on + strand, within CSW01_15235at 275.704 kb on + strand, within CSW01_15235at 275.714 kb on - strand, within CSW01_15235at 275.714 kb on - strand, within CSW01_15235at 275.906 kb on + strandat 275.993 kb on - strand, within CSW01_15240at 276.029 kb on + strand, within CSW01_15240at 276.037 kb on - strand, within CSW01_15240at 276.098 kb on - strand, within CSW01_15240at 276.120 kb on + strand, within CSW01_15240at 276.130 kb on + strand, within CSW01_15240at 276.143 kb on - strand, within CSW01_15240at 276.183 kb on + strand, within CSW01_15240at 276.244 kb on + strand, within CSW01_15240at 276.280 kb on - strand, within CSW01_15240at 276.335 kb on + strand, within CSW01_15240at 276.343 kb on - strand, within CSW01_15240at 276.371 kb on - strand, within CSW01_15240at 276.447 kb on + strand, within CSW01_15240at 276.455 kb on - strand, within CSW01_15240at 276.495 kb on + strand, within CSW01_15240at 276.495 kb on + strand, within CSW01_15240at 276.495 kb on + strand, within CSW01_15240at 276.495 kb on + strand, within CSW01_15240at 276.505 kb on - strandat 276.574 kb on - strandat 276.580 kb on + strandat 276.627 kb on + strandat 276.627 kb on + strandat 276.662 kb on - strandat 276.672 kb on + strandat 276.711 kb on - strand, within CSW01_15245at 276.732 kb on + strand, within CSW01_15245at 276.748 kb on - strand, within CSW01_15245at 276.758 kb on + strand, within CSW01_15245at 276.771 kb on - strand, within CSW01_15245at 276.836 kb on + strand, within CSW01_15245at 276.836 kb on + strand, within CSW01_15245at 276.836 kb on + strand, within CSW01_15245at 276.844 kb on - strand, within CSW01_15245at 276.844 kb on - strand, within CSW01_15245at 276.844 kb on - strand, within CSW01_15245at 276.844 kb on - strand, within CSW01_15245at 276.844 kb on - strand, within CSW01_15245at 276.863 kb on + strand, within CSW01_15245at 276.880 kb on + strand, within CSW01_15245at 276.886 kb on + strand, within CSW01_15245at 276.940 kb on + strand, within CSW01_15245at 276.957 kb on + strand, within CSW01_15245at 277.046 kb on - strand, within CSW01_15245at 277.049 kb on - strand, within CSW01_15245at 277.049 kb on - strand, within CSW01_15245at 277.105 kb on - strand, within CSW01_15245at 277.105 kb on - strand, within CSW01_15245at 277.122 kb on - strand, within CSW01_15245at 277.124 kb on + strand, within CSW01_15245at 277.124 kb on + strand, within CSW01_15245at 277.124 kb on + strand, within CSW01_15245at 277.132 kb on - strand, within CSW01_15245at 277.132 kb on - strand, within CSW01_15245at 277.132 kb on - strand, within CSW01_15245at 277.166 kb on + strand, within CSW01_15245at 277.166 kb on + strand, within CSW01_15245at 277.166 kb on + strand, within CSW01_15245at 277.174 kb on - strand, within CSW01_15245at 277.174 kb on - strand, within CSW01_15245at 277.189 kb on - strand, within CSW01_15245at 277.199 kb on - strand, within CSW01_15245at 277.234 kb on + strand, within CSW01_15245at 277.234 kb on + strand, within CSW01_15245at 277.234 kb on + strand, within CSW01_15245at 277.242 kb on - strand, within CSW01_15245at 277.242 kb on - strand, within CSW01_15245at 277.242 kb on - strand, within CSW01_15245at 277.376 kb on + strand, within CSW01_15245at 277.441 kb on - strand, within CSW01_15245at 277.541 kb on + strand, within CSW01_15245at 277.556 kb on + strand, within CSW01_15245

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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274,893 + -1.1
274,905 + +0.9
274,905 + +1.7
274,913 - +1.7
274,913 - -0.4
274,913 - -1.6
274,913 - -1.3
274,913 - -1.1
274,913 - +1.6
274,925 - -2.3
274,932 - +1.0
274,932 - -1.3
274,986 + +1.3
275,000 - +1.0
275,139 - +1.8
275,143 + -1.8
275,151 - CSW01_15235 0.10 +0.2
275,151 - CSW01_15235 0.10 +0.3
275,166 - CSW01_15235 0.12 -0.3
275,221 + CSW01_15235 0.19 +0.8
275,270 + CSW01_15235 0.25 -1.4
275,270 + CSW01_15235 0.25 -0.1
275,270 + CSW01_15235 0.25 +1.4
275,278 - CSW01_15235 0.26 +2.0
275,323 - CSW01_15235 0.31 -3.6
275,332 - CSW01_15235 0.32 -0.5
275,361 + CSW01_15235 0.35 +0.7
275,473 + CSW01_15235 0.49 -1.3
275,473 + CSW01_15235 0.49 -0.8
275,474 + CSW01_15235 0.49 -0.4
275,481 - CSW01_15235 0.50 -1.2
275,577 + CSW01_15235 0.61 -1.4
275,618 + CSW01_15235 0.66 +1.7
275,704 + CSW01_15235 0.77 -0.5
275,714 - CSW01_15235 0.78 +0.9
275,714 - CSW01_15235 0.78 -0.7
275,906 + +1.0
275,993 - CSW01_15240 0.15 +0.9
276,029 + CSW01_15240 0.20 +0.0
276,037 - CSW01_15240 0.21 -1.5
276,098 - CSW01_15240 0.31 +1.6
276,120 + CSW01_15240 0.34 -0.7
276,130 + CSW01_15240 0.35 +1.7
276,143 - CSW01_15240 0.37 +0.4
276,183 + CSW01_15240 0.43 +1.0
276,244 + CSW01_15240 0.52 -0.0
276,280 - CSW01_15240 0.58 +0.8
276,335 + CSW01_15240 0.66 +1.4
276,343 - CSW01_15240 0.67 -1.8
276,371 - CSW01_15240 0.71 -1.8
276,447 + CSW01_15240 0.82 +1.3
276,455 - CSW01_15240 0.84 -2.5
276,495 + CSW01_15240 0.90 -1.5
276,495 + CSW01_15240 0.90 +0.7
276,495 + CSW01_15240 0.90 -0.1
276,495 + CSW01_15240 0.90 +0.5
276,505 - +1.9
276,574 - +0.0
276,580 + -0.1
276,627 + -2.9
276,627 + +1.1
276,662 - -1.1
276,672 + +0.1
276,711 - CSW01_15245 0.12 -0.7
276,732 + CSW01_15245 0.13 +0.4
276,748 - CSW01_15245 0.14 +0.4
276,758 + CSW01_15245 0.15 -0.7
276,771 - CSW01_15245 0.16 -0.2
276,836 + CSW01_15245 0.20 -2.8
276,836 + CSW01_15245 0.20 +0.1
276,836 + CSW01_15245 0.20 -1.1
276,844 - CSW01_15245 0.21 +1.6
276,844 - CSW01_15245 0.21 -0.4
276,844 - CSW01_15245 0.21 -3.0
276,844 - CSW01_15245 0.21 +0.7
276,844 - CSW01_15245 0.21 -0.1
276,863 + CSW01_15245 0.22 +2.1
276,880 + CSW01_15245 0.23 +1.0
276,886 + CSW01_15245 0.24 -0.7
276,940 + CSW01_15245 0.27 +0.2
276,957 + CSW01_15245 0.29 -0.9
277,046 - CSW01_15245 0.35 -0.4
277,049 - CSW01_15245 0.35 -3.4
277,049 - CSW01_15245 0.35 +0.3
277,105 - CSW01_15245 0.39 -0.7
277,105 - CSW01_15245 0.39 +1.3
277,122 - CSW01_15245 0.40 +0.2
277,124 + CSW01_15245 0.40 -1.7
277,124 + CSW01_15245 0.40 +0.8
277,124 + CSW01_15245 0.40 -0.5
277,132 - CSW01_15245 0.41 -2.3
277,132 - CSW01_15245 0.41 +1.2
277,132 - CSW01_15245 0.41 +1.3
277,166 + CSW01_15245 0.43 -0.5
277,166 + CSW01_15245 0.43 +2.8
277,166 + CSW01_15245 0.43 +1.0
277,174 - CSW01_15245 0.44 -1.6
277,174 - CSW01_15245 0.44 +0.2
277,189 - CSW01_15245 0.45 -2.3
277,199 - CSW01_15245 0.45 +0.4
277,234 + CSW01_15245 0.48 +1.2
277,234 + CSW01_15245 0.48 +0.0
277,234 + CSW01_15245 0.48 -1.3
277,242 - CSW01_15245 0.48 -0.8
277,242 - CSW01_15245 0.48 +0.2
277,242 - CSW01_15245 0.48 +0.3
277,376 + CSW01_15245 0.57 +0.7
277,441 - CSW01_15245 0.62 -0.3
277,541 + CSW01_15245 0.69 -2.2
277,556 + CSW01_15245 0.70 +1.2

Or see this region's nucleotide sequence