Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15230

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15225 and CSW01_15230 are separated by 183 nucleotidesCSW01_15230 and CSW01_15235 are separated by 88 nucleotidesCSW01_15235 and CSW01_15240 overlap by 4 nucleotides CSW01_15225: CSW01_15225 - antibiotic acetyltransferase, at 271,929 to 272,627 _15225 CSW01_15230: CSW01_15230 - glycosyl hydrolase, at 272,811 to 274,977 _15230 CSW01_15235: CSW01_15235 - DUF2861 domain-containing protein, at 275,066 to 275,896 _15235 CSW01_15240: CSW01_15240 - DNA-binding response regulator, at 275,893 to 276,564 _15240 Position (kb) 272 273 274 275Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 271.820 kb on - strandat 271.955 kb on - strandat 272.049 kb on + strand, within CSW01_15225at 272.281 kb on - strand, within CSW01_15225at 272.334 kb on - strand, within CSW01_15225at 272.334 kb on - strand, within CSW01_15225at 272.418 kb on + strand, within CSW01_15225at 272.505 kb on + strand, within CSW01_15225at 272.505 kb on - strand, within CSW01_15225at 272.646 kb on - strandat 272.649 kb on + strandat 272.651 kb on - strandat 272.658 kb on - strandat 272.658 kb on - strandat 272.666 kb on - strandat 272.684 kb on - strandat 272.788 kb on + strandat 272.947 kb on - strandat 272.957 kb on - strandat 272.989 kb on - strandat 272.989 kb on - strandat 272.989 kb on - strandat 273.050 kb on + strand, within CSW01_15230at 273.050 kb on + strand, within CSW01_15230at 273.050 kb on + strand, within CSW01_15230at 273.050 kb on + strand, within CSW01_15230at 273.058 kb on - strand, within CSW01_15230at 273.058 kb on - strand, within CSW01_15230at 273.058 kb on - strand, within CSW01_15230at 273.058 kb on - strand, within CSW01_15230at 273.083 kb on + strand, within CSW01_15230at 273.115 kb on + strand, within CSW01_15230at 273.136 kb on - strand, within CSW01_15230at 273.153 kb on + strand, within CSW01_15230at 273.262 kb on - strand, within CSW01_15230at 273.315 kb on + strand, within CSW01_15230at 273.357 kb on - strand, within CSW01_15230at 273.362 kb on - strand, within CSW01_15230at 273.372 kb on - strand, within CSW01_15230at 273.372 kb on - strand, within CSW01_15230at 273.372 kb on - strand, within CSW01_15230at 273.372 kb on - strand, within CSW01_15230at 273.377 kb on - strand, within CSW01_15230at 273.519 kb on + strand, within CSW01_15230at 273.569 kb on - strand, within CSW01_15230at 273.655 kb on + strand, within CSW01_15230at 273.663 kb on - strand, within CSW01_15230at 273.733 kb on + strand, within CSW01_15230at 273.743 kb on - strand, within CSW01_15230at 273.775 kb on - strand, within CSW01_15230at 273.787 kb on - strand, within CSW01_15230at 273.824 kb on - strand, within CSW01_15230at 273.829 kb on - strand, within CSW01_15230at 273.854 kb on - strand, within CSW01_15230at 273.877 kb on + strand, within CSW01_15230at 273.877 kb on + strand, within CSW01_15230at 273.885 kb on - strand, within CSW01_15230at 273.916 kb on + strand, within CSW01_15230at 273.919 kb on - strand, within CSW01_15230at 273.953 kb on + strand, within CSW01_15230at 273.958 kb on + strand, within CSW01_15230at 273.961 kb on - strand, within CSW01_15230at 273.961 kb on - strand, within CSW01_15230at 273.994 kb on - strand, within CSW01_15230at 273.994 kb on - strand, within CSW01_15230at 274.057 kb on + strand, within CSW01_15230at 274.108 kb on + strand, within CSW01_15230at 274.113 kb on + strand, within CSW01_15230at 274.148 kb on - strand, within CSW01_15230at 274.152 kb on - strand, within CSW01_15230at 274.159 kb on + strand, within CSW01_15230at 274.167 kb on - strand, within CSW01_15230at 274.167 kb on - strand, within CSW01_15230at 274.238 kb on - strand, within CSW01_15230at 274.365 kb on + strand, within CSW01_15230at 274.365 kb on + strand, within CSW01_15230at 274.365 kb on + strand, within CSW01_15230at 274.365 kb on + strand, within CSW01_15230at 274.370 kb on + strand, within CSW01_15230at 274.444 kb on - strand, within CSW01_15230at 274.446 kb on + strand, within CSW01_15230at 274.446 kb on + strand, within CSW01_15230at 274.446 kb on + strand, within CSW01_15230at 274.446 kb on + strand, within CSW01_15230at 274.454 kb on - strand, within CSW01_15230at 274.454 kb on - strand, within CSW01_15230at 274.489 kb on - strand, within CSW01_15230at 274.489 kb on - strand, within CSW01_15230at 274.626 kb on + strand, within CSW01_15230at 274.634 kb on - strand, within CSW01_15230at 274.634 kb on - strand, within CSW01_15230at 274.634 kb on - strand, within CSW01_15230at 274.634 kb on - strand, within CSW01_15230at 274.634 kb on - strand, within CSW01_15230at 274.668 kb on + strand, within CSW01_15230at 274.668 kb on + strand, within CSW01_15230at 274.723 kb on + strand, within CSW01_15230at 274.740 kb on + strand, within CSW01_15230at 274.755 kb on - strand, within CSW01_15230at 274.817 kb on - strandat 274.877 kb on + strandat 274.891 kb on + strandat 274.893 kb on + strandat 274.905 kb on + strandat 274.905 kb on + strandat 274.913 kb on - strandat 274.913 kb on - strandat 274.913 kb on - strandat 274.913 kb on - strandat 274.913 kb on - strandat 274.913 kb on - strandat 274.925 kb on - strandat 274.932 kb on - strandat 274.932 kb on - strandat 274.986 kb on + strandat 275.000 kb on - strandat 275.139 kb on - strandat 275.143 kb on + strandat 275.151 kb on - strand, within CSW01_15235at 275.151 kb on - strand, within CSW01_15235at 275.166 kb on - strand, within CSW01_15235at 275.221 kb on + strand, within CSW01_15235at 275.270 kb on + strand, within CSW01_15235at 275.270 kb on + strand, within CSW01_15235at 275.270 kb on + strand, within CSW01_15235at 275.278 kb on - strand, within CSW01_15235at 275.323 kb on - strand, within CSW01_15235at 275.332 kb on - strand, within CSW01_15235at 275.361 kb on + strand, within CSW01_15235at 275.473 kb on + strand, within CSW01_15235at 275.473 kb on + strand, within CSW01_15235at 275.474 kb on + strand, within CSW01_15235at 275.481 kb on - strand, within CSW01_15235at 275.577 kb on + strand, within CSW01_15235at 275.618 kb on + strand, within CSW01_15235at 275.704 kb on + strand, within CSW01_15235at 275.714 kb on - strand, within CSW01_15235at 275.714 kb on - strand, within CSW01_15235at 275.906 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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271,820 - -0.4
271,955 - -0.1
272,049 + CSW01_15225 0.17 -1.0
272,281 - CSW01_15225 0.50 -0.3
272,334 - CSW01_15225 0.58 +1.6
272,334 - CSW01_15225 0.58 +0.7
272,418 + CSW01_15225 0.70 -1.4
272,505 + CSW01_15225 0.82 +0.6
272,505 - CSW01_15225 0.82 +1.9
272,646 - +0.1
272,649 + +1.4
272,651 - +2.3
272,658 - +1.0
272,658 - -1.7
272,666 - +0.8
272,684 - +1.0
272,788 + -2.8
272,947 - -0.4
272,957 - +0.6
272,989 - +0.7
272,989 - -0.3
272,989 - +0.2
273,050 + CSW01_15230 0.11 +0.6
273,050 + CSW01_15230 0.11 -0.5
273,050 + CSW01_15230 0.11 -0.0
273,050 + CSW01_15230 0.11 +1.6
273,058 - CSW01_15230 0.11 -1.2
273,058 - CSW01_15230 0.11 +1.5
273,058 - CSW01_15230 0.11 +1.5
273,058 - CSW01_15230 0.11 +2.3
273,083 + CSW01_15230 0.13 +0.3
273,115 + CSW01_15230 0.14 -1.4
273,136 - CSW01_15230 0.15 -0.5
273,153 + CSW01_15230 0.16 -0.0
273,262 - CSW01_15230 0.21 +0.1
273,315 + CSW01_15230 0.23 -1.7
273,357 - CSW01_15230 0.25 +0.3
273,362 - CSW01_15230 0.25 -2.6
273,372 - CSW01_15230 0.26 +0.3
273,372 - CSW01_15230 0.26 +0.5
273,372 - CSW01_15230 0.26 +0.0
273,372 - CSW01_15230 0.26 +0.6
273,377 - CSW01_15230 0.26 -0.2
273,519 + CSW01_15230 0.33 +0.5
273,569 - CSW01_15230 0.35 -0.7
273,655 + CSW01_15230 0.39 +1.0
273,663 - CSW01_15230 0.39 +0.9
273,733 + CSW01_15230 0.43 +0.4
273,743 - CSW01_15230 0.43 +0.0
273,775 - CSW01_15230 0.44 +0.4
273,787 - CSW01_15230 0.45 +2.0
273,824 - CSW01_15230 0.47 +0.9
273,829 - CSW01_15230 0.47 +1.3
273,854 - CSW01_15230 0.48 +2.3
273,877 + CSW01_15230 0.49 -1.7
273,877 + CSW01_15230 0.49 -1.1
273,885 - CSW01_15230 0.50 -0.2
273,916 + CSW01_15230 0.51 -0.7
273,919 - CSW01_15230 0.51 +0.0
273,953 + CSW01_15230 0.53 +0.5
273,958 + CSW01_15230 0.53 +0.4
273,961 - CSW01_15230 0.53 -3.2
273,961 - CSW01_15230 0.53 +2.1
273,994 - CSW01_15230 0.55 -1.3
273,994 - CSW01_15230 0.55 -0.3
274,057 + CSW01_15230 0.57 -2.9
274,108 + CSW01_15230 0.60 +0.7
274,113 + CSW01_15230 0.60 +0.0
274,148 - CSW01_15230 0.62 +0.6
274,152 - CSW01_15230 0.62 +1.2
274,159 + CSW01_15230 0.62 +1.3
274,167 - CSW01_15230 0.63 +1.9
274,167 - CSW01_15230 0.63 +0.8
274,238 - CSW01_15230 0.66 -1.1
274,365 + CSW01_15230 0.72 -0.6
274,365 + CSW01_15230 0.72 +0.3
274,365 + CSW01_15230 0.72 -1.8
274,365 + CSW01_15230 0.72 +0.5
274,370 + CSW01_15230 0.72 +0.6
274,444 - CSW01_15230 0.75 +0.7
274,446 + CSW01_15230 0.75 -0.7
274,446 + CSW01_15230 0.75 -1.6
274,446 + CSW01_15230 0.75 -1.7
274,446 + CSW01_15230 0.75 +0.1
274,454 - CSW01_15230 0.76 -1.1
274,454 - CSW01_15230 0.76 -0.8
274,489 - CSW01_15230 0.77 +0.9
274,489 - CSW01_15230 0.77 -0.5
274,626 + CSW01_15230 0.84 +1.3
274,634 - CSW01_15230 0.84 -0.5
274,634 - CSW01_15230 0.84 -0.4
274,634 - CSW01_15230 0.84 +1.0
274,634 - CSW01_15230 0.84 +0.6
274,634 - CSW01_15230 0.84 -2.9
274,668 + CSW01_15230 0.86 +0.4
274,668 + CSW01_15230 0.86 -0.5
274,723 + CSW01_15230 0.88 +0.9
274,740 + CSW01_15230 0.89 -0.7
274,755 - CSW01_15230 0.90 +1.0
274,817 - +1.2
274,877 + -0.0
274,891 + +0.3
274,893 + -1.1
274,905 + +0.9
274,905 + +1.7
274,913 - +1.7
274,913 - -0.4
274,913 - -1.6
274,913 - -1.3
274,913 - -1.1
274,913 - +1.6
274,925 - -2.3
274,932 - +1.0
274,932 - -1.3
274,986 + +1.3
275,000 - +1.0
275,139 - +1.8
275,143 + -1.8
275,151 - CSW01_15235 0.10 +0.2
275,151 - CSW01_15235 0.10 +0.3
275,166 - CSW01_15235 0.12 -0.3
275,221 + CSW01_15235 0.19 +0.8
275,270 + CSW01_15235 0.25 -1.4
275,270 + CSW01_15235 0.25 -0.1
275,270 + CSW01_15235 0.25 +1.4
275,278 - CSW01_15235 0.26 +2.0
275,323 - CSW01_15235 0.31 -3.6
275,332 - CSW01_15235 0.32 -0.5
275,361 + CSW01_15235 0.35 +0.7
275,473 + CSW01_15235 0.49 -1.3
275,473 + CSW01_15235 0.49 -0.8
275,474 + CSW01_15235 0.49 -0.4
275,481 - CSW01_15235 0.50 -1.2
275,577 + CSW01_15235 0.61 -1.4
275,618 + CSW01_15235 0.66 +1.7
275,704 + CSW01_15235 0.77 -0.5
275,714 - CSW01_15235 0.78 +0.9
275,714 - CSW01_15235 0.78 -0.7
275,906 + +1.0

Or see this region's nucleotide sequence