Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14685 and CSW01_14690 are separated by 139 nucleotides CSW01_14690 and CSW01_14695 are separated by 52 nucleotides CSW01_14695 and CSW01_14700 are separated by 153 nucleotides
CSW01_14685: CSW01_14685 - uridine phosphorylase, at 148,505 to 149,236
_14685
CSW01_14690: CSW01_14690 - Crp/Fnr family transcriptional regulator, at 149,376 to 150,056
_14690
CSW01_14695: CSW01_14695 - glycerophosphodiester phosphodiesterase, at 150,109 to 151,176
_14695
CSW01_14700: CSW01_14700 - MFS transporter, at 151,330 to 152,688
_14700
Position (kb) 150
151
152 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 149.134 kb on - strand, within CSW01_14685 at 149.157 kb on - strand, within CSW01_14685 at 149.176 kb on + strand at 149.236 kb on + strand at 149.236 kb on + strand at 149.236 kb on + strand at 149.243 kb on - strand at 149.290 kb on - strand at 149.342 kb on + strand at 149.607 kb on - strand, within CSW01_14690 at 149.663 kb on + strand, within CSW01_14690 at 149.726 kb on - strand, within CSW01_14690 at 149.736 kb on - strand, within CSW01_14690 at 149.753 kb on - strand, within CSW01_14690 at 149.780 kb on + strand, within CSW01_14690 at 149.788 kb on - strand, within CSW01_14690 at 149.801 kb on + strand, within CSW01_14690 at 149.890 kb on + strand, within CSW01_14690 at 149.908 kb on - strand, within CSW01_14690 at 150.054 kb on - strand at 150.198 kb on + strand at 150.248 kb on + strand, within CSW01_14695 at 150.256 kb on - strand, within CSW01_14695 at 150.256 kb on - strand, within CSW01_14695 at 150.256 kb on - strand, within CSW01_14695 at 150.256 kb on - strand, within CSW01_14695 at 150.256 kb on - strand, within CSW01_14695 at 150.262 kb on - strand, within CSW01_14695 at 150.276 kb on + strand, within CSW01_14695 at 150.276 kb on + strand, within CSW01_14695 at 150.369 kb on - strand, within CSW01_14695 at 150.418 kb on + strand, within CSW01_14695 at 150.426 kb on - strand, within CSW01_14695 at 150.432 kb on - strand, within CSW01_14695 at 150.438 kb on - strand, within CSW01_14695 at 150.552 kb on + strand, within CSW01_14695 at 150.552 kb on + strand, within CSW01_14695 at 150.560 kb on - strand, within CSW01_14695 at 150.753 kb on - strand, within CSW01_14695 at 150.755 kb on + strand, within CSW01_14695 at 150.782 kb on - strand, within CSW01_14695 at 150.848 kb on + strand, within CSW01_14695 at 150.955 kb on + strand, within CSW01_14695 at 151.073 kb on + strand at 151.073 kb on + strand at 151.106 kb on - strand at 151.138 kb on + strand at 151.138 kb on + strand at 151.146 kb on - strand at 151.146 kb on - strand at 151.146 kb on - strand at 151.211 kb on - strand at 151.211 kb on - strand at 151.211 kb on - strand at 151.222 kb on + strand at 151.229 kb on + strand at 151.257 kb on + strand at 151.298 kb on - strand at 151.300 kb on - strand at 151.337 kb on - strand at 151.458 kb on + strand at 151.464 kb on + strand at 151.474 kb on - strand, within CSW01_14700 at 151.522 kb on + strand, within CSW01_14700 at 151.530 kb on - strand, within CSW01_14700 at 151.577 kb on + strand, within CSW01_14700 at 151.656 kb on - strand, within CSW01_14700 at 151.658 kb on + strand, within CSW01_14700 at 151.738 kb on - strand, within CSW01_14700 at 151.841 kb on + strand, within CSW01_14700 at 151.872 kb on - strand, within CSW01_14700 at 151.924 kb on - strand, within CSW01_14700 at 151.933 kb on + strand, within CSW01_14700 at 152.046 kb on + strand, within CSW01_14700 at 152.143 kb on + strand, within CSW01_14700 at 152.145 kb on + strand, within CSW01_14700
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 149,134 - CSW01_14685 0.86 -0.4 149,157 - CSW01_14685 0.89 -0.1 149,176 + +1.3 149,236 + -1.3 149,236 + -2.4 149,236 + -1.0 149,243 - -2.5 149,290 - +0.7 149,342 + +1.3 149,607 - CSW01_14690 0.34 -0.0 149,663 + CSW01_14690 0.42 +0.4 149,726 - CSW01_14690 0.51 -0.1 149,736 - CSW01_14690 0.53 -2.8 149,753 - CSW01_14690 0.55 +0.0 149,780 + CSW01_14690 0.59 +0.6 149,788 - CSW01_14690 0.60 -1.7 149,801 + CSW01_14690 0.62 -0.6 149,890 + CSW01_14690 0.75 +1.2 149,908 - CSW01_14690 0.78 -1.1 150,054 - -1.5 150,198 + -3.1 150,248 + CSW01_14695 0.13 -0.7 150,256 - CSW01_14695 0.14 +0.8 150,256 - CSW01_14695 0.14 -0.3 150,256 - CSW01_14695 0.14 -0.9 150,256 - CSW01_14695 0.14 +1.4 150,256 - CSW01_14695 0.14 +0.5 150,262 - CSW01_14695 0.14 -2.0 150,276 + CSW01_14695 0.16 -3.6 150,276 + CSW01_14695 0.16 -2.7 150,369 - CSW01_14695 0.24 -0.6 150,418 + CSW01_14695 0.29 -0.7 150,426 - CSW01_14695 0.30 +0.4 150,432 - CSW01_14695 0.30 +1.4 150,438 - CSW01_14695 0.31 -0.2 150,552 + CSW01_14695 0.41 -0.3 150,552 + CSW01_14695 0.41 +0.3 150,560 - CSW01_14695 0.42 -0.3 150,753 - CSW01_14695 0.60 -1.1 150,755 + CSW01_14695 0.60 +0.7 150,782 - CSW01_14695 0.63 -1.9 150,848 + CSW01_14695 0.69 -0.1 150,955 + CSW01_14695 0.79 -0.1 151,073 + +1.0 151,073 + -2.4 151,106 - -1.9 151,138 + -0.7 151,138 + -0.0 151,146 - +0.1 151,146 - -2.6 151,146 - -0.1 151,211 - -1.8 151,211 - -0.8 151,211 - -0.2 151,222 + -1.8 151,229 + -0.8 151,257 + -1.0 151,298 - -1.0 151,300 - -2.0 151,337 - -2.4 151,458 + -1.4 151,464 + +0.8 151,474 - CSW01_14700 0.11 +0.8 151,522 + CSW01_14700 0.14 +1.6 151,530 - CSW01_14700 0.15 -0.0 151,577 + CSW01_14700 0.18 +0.7 151,656 - CSW01_14700 0.24 -2.3 151,658 + CSW01_14700 0.24 +0.4 151,738 - CSW01_14700 0.30 -0.9 151,841 + CSW01_14700 0.38 +0.4 151,872 - CSW01_14700 0.40 +0.4 151,924 - CSW01_14700 0.44 -1.4 151,933 + CSW01_14700 0.44 +0.4 152,046 + CSW01_14700 0.53 -0.6 152,143 + CSW01_14700 0.60 +1.9 152,145 + CSW01_14700 0.60 +0.7
Or see this region's nucleotide sequence