Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14360

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14355 and CSW01_14360 overlap by 4 nucleotidesCSW01_14360 and CSW01_14365 are separated by 133 nucleotides CSW01_14355: CSW01_14355 - DUF1566 domain-containing protein, at 75,325 to 76,767 _14355 CSW01_14360: CSW01_14360 - DUF1566 domain-containing protein, at 76,764 to 77,324 _14360 CSW01_14365: CSW01_14365 - methyl-accepting chemotaxis protein, at 77,458 to 79,101 _14365 Position (kb) 76 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 75.788 kb on - strand, within CSW01_14355at 75.971 kb on + strand, within CSW01_14355at 75.981 kb on + strand, within CSW01_14355at 75.989 kb on - strand, within CSW01_14355at 76.041 kb on + strand, within CSW01_14355at 76.163 kb on - strand, within CSW01_14355at 76.181 kb on - strand, within CSW01_14355at 76.193 kb on + strand, within CSW01_14355at 76.206 kb on - strand, within CSW01_14355at 76.206 kb on - strand, within CSW01_14355at 76.244 kb on - strand, within CSW01_14355at 76.320 kb on + strand, within CSW01_14355at 76.384 kb on + strand, within CSW01_14355at 76.397 kb on - strand, within CSW01_14355at 76.412 kb on - strand, within CSW01_14355at 76.451 kb on + strand, within CSW01_14355at 76.451 kb on + strand, within CSW01_14355at 76.451 kb on + strand, within CSW01_14355at 76.451 kb on + strand, within CSW01_14355at 76.451 kb on + strand, within CSW01_14355at 76.451 kb on + strand, within CSW01_14355at 76.451 kb on + strand, within CSW01_14355at 76.459 kb on - strand, within CSW01_14355at 76.459 kb on - strand, within CSW01_14355at 76.459 kb on - strand, within CSW01_14355at 76.459 kb on - strand, within CSW01_14355at 76.468 kb on - strand, within CSW01_14355at 76.503 kb on + strand, within CSW01_14355at 76.641 kb on + strandat 76.657 kb on + strandat 76.679 kb on + strandat 76.689 kb on + strandat 76.797 kb on + strandat 76.805 kb on - strandat 76.818 kb on + strandat 76.888 kb on + strand, within CSW01_14360at 76.890 kb on + strand, within CSW01_14360at 76.908 kb on + strand, within CSW01_14360at 76.908 kb on + strand, within CSW01_14360at 76.908 kb on + strand, within CSW01_14360at 76.916 kb on - strand, within CSW01_14360at 76.943 kb on + strand, within CSW01_14360at 76.966 kb on + strand, within CSW01_14360at 76.966 kb on + strand, within CSW01_14360at 76.971 kb on + strand, within CSW01_14360at 76.971 kb on + strand, within CSW01_14360at 76.974 kb on - strand, within CSW01_14360at 76.984 kb on - strand, within CSW01_14360at 76.991 kb on - strand, within CSW01_14360at 76.993 kb on + strand, within CSW01_14360at 77.047 kb on + strand, within CSW01_14360at 77.055 kb on - strand, within CSW01_14360at 77.065 kb on + strand, within CSW01_14360at 77.073 kb on - strand, within CSW01_14360at 77.204 kb on + strand, within CSW01_14360at 77.204 kb on + strand, within CSW01_14360at 77.204 kb on + strand, within CSW01_14360at 77.235 kb on + strand, within CSW01_14360at 77.414 kb on + strandat 77.414 kb on + strandat 77.519 kb on - strandat 77.519 kb on - strandat 77.519 kb on - strandat 77.535 kb on + strandat 77.543 kb on - strandat 77.642 kb on + strand, within CSW01_14365at 77.647 kb on + strand, within CSW01_14365at 77.706 kb on - strand, within CSW01_14365at 77.733 kb on + strand, within CSW01_14365at 77.733 kb on + strand, within CSW01_14365at 77.733 kb on + strand, within CSW01_14365at 77.741 kb on - strand, within CSW01_14365at 77.763 kb on - strand, within CSW01_14365at 77.821 kb on - strand, within CSW01_14365at 78.030 kb on - strand, within CSW01_14365at 78.066 kb on - strand, within CSW01_14365at 78.137 kb on + strand, within CSW01_14365at 78.214 kb on + strand, within CSW01_14365at 78.223 kb on + strand, within CSW01_14365at 78.263 kb on - strand, within CSW01_14365at 78.280 kb on - strand, within CSW01_14365at 78.282 kb on + strand, within CSW01_14365at 78.289 kb on + strand, within CSW01_14365at 78.312 kb on - strand, within CSW01_14365

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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75,788 - CSW01_14355 0.32 -1.1
75,971 + CSW01_14355 0.45 -0.5
75,981 + CSW01_14355 0.45 -1.6
75,989 - CSW01_14355 0.46 +0.5
76,041 + CSW01_14355 0.50 -2.8
76,163 - CSW01_14355 0.58 -0.4
76,181 - CSW01_14355 0.59 +0.3
76,193 + CSW01_14355 0.60 -1.5
76,206 - CSW01_14355 0.61 +0.4
76,206 - CSW01_14355 0.61 +0.1
76,244 - CSW01_14355 0.64 +0.2
76,320 + CSW01_14355 0.69 +1.9
76,384 + CSW01_14355 0.73 -2.7
76,397 - CSW01_14355 0.74 -0.2
76,412 - CSW01_14355 0.75 +1.0
76,451 + CSW01_14355 0.78 +0.4
76,451 + CSW01_14355 0.78 -2.9
76,451 + CSW01_14355 0.78 +0.3
76,451 + CSW01_14355 0.78 -0.7
76,451 + CSW01_14355 0.78 -1.8
76,451 + CSW01_14355 0.78 +0.2
76,451 + CSW01_14355 0.78 -3.7
76,459 - CSW01_14355 0.79 -0.1
76,459 - CSW01_14355 0.79 -3.0
76,459 - CSW01_14355 0.79 -3.7
76,459 - CSW01_14355 0.79 +2.2
76,468 - CSW01_14355 0.79 -0.7
76,503 + CSW01_14355 0.82 -0.1
76,641 + -0.6
76,657 + +0.7
76,679 + -2.0
76,689 + +1.1
76,797 + +1.0
76,805 - +0.3
76,818 + +1.0
76,888 + CSW01_14360 0.22 +1.3
76,890 + CSW01_14360 0.22 +1.0
76,908 + CSW01_14360 0.26 -0.8
76,908 + CSW01_14360 0.26 +1.5
76,908 + CSW01_14360 0.26 +2.1
76,916 - CSW01_14360 0.27 +1.3
76,943 + CSW01_14360 0.32 +0.8
76,966 + CSW01_14360 0.36 +0.3
76,966 + CSW01_14360 0.36 +1.0
76,971 + CSW01_14360 0.37 +1.4
76,971 + CSW01_14360 0.37 -0.3
76,974 - CSW01_14360 0.37 +0.4
76,984 - CSW01_14360 0.39 +0.6
76,991 - CSW01_14360 0.40 -1.1
76,993 + CSW01_14360 0.41 -0.4
77,047 + CSW01_14360 0.50 +0.2
77,055 - CSW01_14360 0.52 -1.0
77,065 + CSW01_14360 0.54 -0.1
77,073 - CSW01_14360 0.55 -0.0
77,204 + CSW01_14360 0.78 -1.5
77,204 + CSW01_14360 0.78 -2.5
77,204 + CSW01_14360 0.78 -0.5
77,235 + CSW01_14360 0.84 -2.1
77,414 + +0.7
77,414 + -0.9
77,519 - +1.8
77,519 - -3.2
77,519 - +1.4
77,535 + +1.1
77,543 - -0.7
77,642 + CSW01_14365 0.11 -1.1
77,647 + CSW01_14365 0.11 +1.1
77,706 - CSW01_14365 0.15 +0.4
77,733 + CSW01_14365 0.17 -1.1
77,733 + CSW01_14365 0.17 +1.9
77,733 + CSW01_14365 0.17 -0.1
77,741 - CSW01_14365 0.17 +0.0
77,763 - CSW01_14365 0.19 +0.9
77,821 - CSW01_14365 0.22 +0.5
78,030 - CSW01_14365 0.35 +0.0
78,066 - CSW01_14365 0.37 -2.8
78,137 + CSW01_14365 0.41 +0.5
78,214 + CSW01_14365 0.46 +0.1
78,223 + CSW01_14365 0.47 -2.3
78,263 - CSW01_14365 0.49 +0.8
78,280 - CSW01_14365 0.50 -2.5
78,282 + CSW01_14365 0.50 +0.9
78,289 + CSW01_14365 0.51 +0.7
78,312 - CSW01_14365 0.52 -2.5

Or see this region's nucleotide sequence