Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14340

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14335 and CSW01_14340 are separated by 212 nucleotidesCSW01_14340 and CSW01_14345 overlap by 1 nucleotides CSW01_14335: CSW01_14335 - ATP-dependent helicase, at 67,303 to 68,661 _14335 CSW01_14340: CSW01_14340 - S9 family peptidase, at 68,874 to 70,871 _14340 CSW01_14345: CSW01_14345 - ligand-gated channel, at 70,871 to 73,012 _14345 Position (kb) 68 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 68.461 kb on + strand, within CSW01_14335at 68.484 kb on + strand, within CSW01_14335at 68.484 kb on + strand, within CSW01_14335at 68.484 kb on + strand, within CSW01_14335at 68.484 kb on + strand, within CSW01_14335at 68.484 kb on + strand, within CSW01_14335at 68.492 kb on - strand, within CSW01_14335at 68.492 kb on - strand, within CSW01_14335at 68.492 kb on - strand, within CSW01_14335at 68.492 kb on - strand, within CSW01_14335at 68.492 kb on - strand, within CSW01_14335at 68.492 kb on - strand, within CSW01_14335at 68.670 kb on + strandat 68.676 kb on - strandat 68.676 kb on - strandat 68.678 kb on - strandat 68.680 kb on + strandat 68.882 kb on + strandat 68.882 kb on + strandat 68.990 kb on + strandat 69.056 kb on - strandat 69.497 kb on + strand, within CSW01_14340at 69.629 kb on + strand, within CSW01_14340at 69.673 kb on + strand, within CSW01_14340at 69.679 kb on - strand, within CSW01_14340at 69.897 kb on - strand, within CSW01_14340at 69.974 kb on + strand, within CSW01_14340at 70.042 kb on - strand, within CSW01_14340at 70.087 kb on + strand, within CSW01_14340at 70.165 kb on + strand, within CSW01_14340at 70.216 kb on - strand, within CSW01_14340at 70.298 kb on + strand, within CSW01_14340at 70.344 kb on + strand, within CSW01_14340at 70.516 kb on + strand, within CSW01_14340at 70.573 kb on - strand, within CSW01_14340at 70.643 kb on - strand, within CSW01_14340at 70.663 kb on - strand, within CSW01_14340at 70.746 kb on - strandat 70.784 kb on - strandat 70.793 kb on - strandat 70.993 kb on - strandat 71.030 kb on + strandat 71.038 kb on - strandat 71.195 kb on + strand, within CSW01_14345at 71.228 kb on + strand, within CSW01_14345at 71.238 kb on + strand, within CSW01_14345at 71.246 kb on - strand, within CSW01_14345at 71.246 kb on - strand, within CSW01_14345at 71.246 kb on - strand, within CSW01_14345at 71.246 kb on - strand, within CSW01_14345at 71.246 kb on - strand, within CSW01_14345at 71.253 kb on + strand, within CSW01_14345at 71.261 kb on - strand, within CSW01_14345at 71.286 kb on + strand, within CSW01_14345at 71.291 kb on + strand, within CSW01_14345at 71.294 kb on - strand, within CSW01_14345at 71.294 kb on - strand, within CSW01_14345at 71.309 kb on - strand, within CSW01_14345at 71.385 kb on - strand, within CSW01_14345at 71.397 kb on + strand, within CSW01_14345at 71.410 kb on - strand, within CSW01_14345at 71.467 kb on + strand, within CSW01_14345at 71.547 kb on + strand, within CSW01_14345at 71.690 kb on - strand, within CSW01_14345at 71.744 kb on + strand, within CSW01_14345at 71.790 kb on + strand, within CSW01_14345at 71.862 kb on + strand, within CSW01_14345at 71.862 kb on + strand, within CSW01_14345at 71.862 kb on + strand, within CSW01_14345

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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68,461 + CSW01_14335 0.85 -2.5
68,484 + CSW01_14335 0.87 -3.7
68,484 + CSW01_14335 0.87 +1.4
68,484 + CSW01_14335 0.87 -1.1
68,484 + CSW01_14335 0.87 -1.7
68,484 + CSW01_14335 0.87 -0.8
68,492 - CSW01_14335 0.87 -3.0
68,492 - CSW01_14335 0.87 +0.7
68,492 - CSW01_14335 0.87 -2.2
68,492 - CSW01_14335 0.87 +0.7
68,492 - CSW01_14335 0.87 -1.7
68,492 - CSW01_14335 0.87 +0.1
68,670 + +0.1
68,676 - +0.3
68,676 - +0.1
68,678 - -0.1
68,680 + +0.0
68,882 + +1.8
68,882 + -1.3
68,990 + -0.5
69,056 - -1.0
69,497 + CSW01_14340 0.31 -0.1
69,629 + CSW01_14340 0.38 -2.5
69,673 + CSW01_14340 0.40 -0.1
69,679 - CSW01_14340 0.40 +0.2
69,897 - CSW01_14340 0.51 +1.1
69,974 + CSW01_14340 0.55 +0.1
70,042 - CSW01_14340 0.58 +1.0
70,087 + CSW01_14340 0.61 -0.8
70,165 + CSW01_14340 0.65 +1.0
70,216 - CSW01_14340 0.67 +0.5
70,298 + CSW01_14340 0.71 +0.9
70,344 + CSW01_14340 0.74 +0.4
70,516 + CSW01_14340 0.82 +2.1
70,573 - CSW01_14340 0.85 -0.4
70,643 - CSW01_14340 0.89 +1.8
70,663 - CSW01_14340 0.90 +0.3
70,746 - -0.3
70,784 - +0.4
70,793 - +0.8
70,993 - -1.5
71,030 + -3.1
71,038 - -2.5
71,195 + CSW01_14345 0.15 +1.7
71,228 + CSW01_14345 0.17 +0.2
71,238 + CSW01_14345 0.17 +0.8
71,246 - CSW01_14345 0.18 -0.1
71,246 - CSW01_14345 0.18 -2.4
71,246 - CSW01_14345 0.18 -2.3
71,246 - CSW01_14345 0.18 -0.1
71,246 - CSW01_14345 0.18 -0.4
71,253 + CSW01_14345 0.18 -0.9
71,261 - CSW01_14345 0.18 +0.4
71,286 + CSW01_14345 0.19 +1.3
71,291 + CSW01_14345 0.20 +1.1
71,294 - CSW01_14345 0.20 -1.8
71,294 - CSW01_14345 0.20 -0.7
71,309 - CSW01_14345 0.20 +1.0
71,385 - CSW01_14345 0.24 +0.1
71,397 + CSW01_14345 0.25 +0.2
71,410 - CSW01_14345 0.25 +0.8
71,467 + CSW01_14345 0.28 +0.8
71,547 + CSW01_14345 0.32 -0.1
71,690 - CSW01_14345 0.38 +0.5
71,744 + CSW01_14345 0.41 +1.2
71,790 + CSW01_14345 0.43 -0.9
71,862 + CSW01_14345 0.46 +1.4
71,862 + CSW01_14345 0.46 -0.6
71,862 + CSW01_14345 0.46 +0.3

Or see this region's nucleotide sequence