Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14325 and CSW01_14330 are separated by 85 nucleotides CSW01_14330 and CSW01_14335 are separated by 529 nucleotides
CSW01_14325: CSW01_14325 - peptidase, at 65,519 to 66,439
_14325
CSW01_14330: CSW01_14330 - hypothetical protein, at 66,525 to 66,773
_14330
CSW01_14335: CSW01_14335 - ATP-dependent helicase, at 67,303 to 68,661
_14335
Position (kb) 66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 65.613 kb on - strand, within CSW01_14325 at 65.696 kb on + strand, within CSW01_14325 at 65.726 kb on - strand, within CSW01_14325 at 65.804 kb on + strand, within CSW01_14325 at 65.813 kb on - strand, within CSW01_14325 at 65.819 kb on - strand, within CSW01_14325 at 65.866 kb on - strand, within CSW01_14325 at 65.901 kb on + strand, within CSW01_14325 at 65.977 kb on + strand, within CSW01_14325 at 66.060 kb on - strand, within CSW01_14325 at 66.121 kb on + strand, within CSW01_14325 at 66.217 kb on + strand, within CSW01_14325 at 66.317 kb on + strand, within CSW01_14325 at 66.416 kb on - strand at 66.418 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.532 kb on + strand at 66.540 kb on - strand at 66.540 kb on - strand at 66.540 kb on - strand at 66.540 kb on - strand at 66.540 kb on - strand at 66.540 kb on - strand at 66.540 kb on - strand at 66.540 kb on - strand at 66.540 kb on - strand at 66.699 kb on - strand, within CSW01_14330 at 66.710 kb on - strand, within CSW01_14330 at 66.788 kb on - strand at 66.788 kb on - strand at 66.811 kb on + strand at 66.819 kb on - strand at 66.819 kb on - strand at 66.819 kb on - strand at 66.819 kb on - strand at 66.819 kb on - strand at 67.087 kb on - strand at 67.099 kb on - strand at 67.101 kb on + strand at 67.152 kb on - strand at 67.226 kb on + strand at 67.227 kb on + strand at 67.232 kb on - strand at 67.236 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 65,613 - CSW01_14325 0.10 +0.6 65,696 + CSW01_14325 0.19 -3.3 65,726 - CSW01_14325 0.22 -1.0 65,804 + CSW01_14325 0.31 -0.8 65,813 - CSW01_14325 0.32 -3.1 65,819 - CSW01_14325 0.33 -0.7 65,866 - CSW01_14325 0.38 +1.2 65,901 + CSW01_14325 0.41 +0.3 65,977 + CSW01_14325 0.50 +0.6 66,060 - CSW01_14325 0.59 -2.2 66,121 + CSW01_14325 0.65 -0.5 66,217 + CSW01_14325 0.76 -0.7 66,317 + CSW01_14325 0.87 +1.3 66,416 - -1.9 66,418 + +0.2 66,532 + -0.8 66,532 + -2.3 66,532 + -2.5 66,532 + -2.6 66,532 + +2.0 66,532 + -1.2 66,532 + -1.3 66,532 + +0.5 66,532 + -2.2 66,532 + +1.5 66,532 + -0.8 66,532 + +1.1 66,532 + +0.1 66,532 + -0.2 66,532 + +1.1 66,532 + +0.1 66,532 + -0.4 66,532 + -2.6 66,532 + -3.5 66,532 + -0.9 66,540 - -1.1 66,540 - -0.2 66,540 - -0.2 66,540 - -1.2 66,540 - -1.4 66,540 - -0.3 66,540 - +0.6 66,540 - -0.3 66,540 - -0.4 66,699 - CSW01_14330 0.70 +0.4 66,710 - CSW01_14330 0.74 +1.4 66,788 - -2.1 66,788 - +0.7 66,811 + +0.6 66,819 - -0.3 66,819 - -1.3 66,819 - +0.4 66,819 - -2.6 66,819 - +0.7 67,087 - -0.7 67,099 - +0.7 67,101 + -0.4 67,152 - +0.1 67,226 + -2.1 67,227 + +2.1 67,232 - -0.2 67,236 + +2.1
Or see this region's nucleotide sequence