Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14150

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14140 and CSW01_14145 overlap by 1 nucleotidesCSW01_14145 and CSW01_14150 overlap by 4 nucleotidesCSW01_14150 and CSW01_14155 are separated by 0 nucleotidesCSW01_14155 and CSW01_14160 are separated by 102 nucleotides CSW01_14140: CSW01_14140 - type VI secretion system tip protein VgrG, at 20,426 to 22,510 _14140 CSW01_14145: CSW01_14145 - DUF4123 domain-containing protein, at 22,510 to 23,397 _14145 CSW01_14150: CSW01_14150 - hypothetical protein, at 23,394 to 26,651 _14150 CSW01_14155: CSW01_14155 - hypothetical protein, at 26,652 to 27,380 _14155 CSW01_14160: CSW01_14160 - glutathione S-transferase, at 27,483 to 27,884 _14160 Position (kb) 23 24 25 26 27Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 22.404 kb on + strandat 22.425 kb on - strandat 22.439 kb on - strandat 22.456 kb on + strandat 22.464 kb on + strandat 22.464 kb on + strandat 22.472 kb on - strandat 22.484 kb on - strandat 22.495 kb on + strandat 22.531 kb on + strandat 22.534 kb on + strandat 22.542 kb on - strandat 22.542 kb on - strandat 22.542 kb on - strandat 22.698 kb on + strand, within CSW01_14145at 22.698 kb on + strand, within CSW01_14145at 22.698 kb on + strand, within CSW01_14145at 22.854 kb on + strand, within CSW01_14145at 22.862 kb on + strand, within CSW01_14145at 22.862 kb on - strand, within CSW01_14145at 22.969 kb on + strand, within CSW01_14145at 23.002 kb on - strand, within CSW01_14145at 23.019 kb on - strand, within CSW01_14145at 23.029 kb on - strand, within CSW01_14145at 23.079 kb on + strand, within CSW01_14145at 23.079 kb on + strand, within CSW01_14145at 23.079 kb on + strand, within CSW01_14145at 23.087 kb on + strand, within CSW01_14145at 23.087 kb on - strand, within CSW01_14145at 23.121 kb on - strand, within CSW01_14145at 23.148 kb on + strand, within CSW01_14145at 23.224 kb on - strand, within CSW01_14145at 23.244 kb on - strand, within CSW01_14145at 23.341 kb on - strandat 23.358 kb on - strandat 23.386 kb on + strandat 23.386 kb on + strandat 23.394 kb on - strandat 23.394 kb on - strandat 23.432 kb on - strandat 23.437 kb on - strandat 23.506 kb on + strandat 23.613 kb on - strandat 23.638 kb on - strandat 23.676 kb on + strandat 23.779 kb on + strand, within CSW01_14150at 23.785 kb on - strand, within CSW01_14150at 23.797 kb on - strand, within CSW01_14150at 23.833 kb on - strand, within CSW01_14150at 23.843 kb on - strand, within CSW01_14150at 23.869 kb on + strand, within CSW01_14150at 23.874 kb on + strand, within CSW01_14150at 23.893 kb on + strand, within CSW01_14150at 23.896 kb on - strand, within CSW01_14150at 23.901 kb on - strand, within CSW01_14150at 23.924 kb on + strand, within CSW01_14150at 23.947 kb on + strand, within CSW01_14150at 24.325 kb on + strand, within CSW01_14150at 24.461 kb on + strand, within CSW01_14150at 24.512 kb on + strand, within CSW01_14150at 24.518 kb on - strand, within CSW01_14150at 24.520 kb on + strand, within CSW01_14150at 24.528 kb on - strand, within CSW01_14150at 24.605 kb on + strand, within CSW01_14150at 24.613 kb on - strand, within CSW01_14150at 24.613 kb on - strand, within CSW01_14150at 24.613 kb on - strand, within CSW01_14150at 24.632 kb on - strand, within CSW01_14150at 24.632 kb on - strand, within CSW01_14150at 24.633 kb on + strand, within CSW01_14150at 24.657 kb on + strand, within CSW01_14150at 24.659 kb on + strand, within CSW01_14150at 24.659 kb on + strand, within CSW01_14150at 24.678 kb on + strand, within CSW01_14150at 24.678 kb on - strand, within CSW01_14150at 24.685 kb on + strand, within CSW01_14150at 24.687 kb on - strand, within CSW01_14150at 24.693 kb on - strand, within CSW01_14150at 24.723 kb on - strand, within CSW01_14150at 24.790 kb on - strand, within CSW01_14150at 24.909 kb on + strand, within CSW01_14150at 24.917 kb on - strand, within CSW01_14150at 25.043 kb on + strand, within CSW01_14150at 25.076 kb on + strand, within CSW01_14150at 25.106 kb on + strand, within CSW01_14150at 25.151 kb on + strand, within CSW01_14150at 25.151 kb on + strand, within CSW01_14150at 25.159 kb on - strand, within CSW01_14150at 25.159 kb on - strand, within CSW01_14150at 25.196 kb on - strand, within CSW01_14150at 25.243 kb on - strand, within CSW01_14150at 25.312 kb on - strand, within CSW01_14150at 25.379 kb on + strand, within CSW01_14150at 25.379 kb on + strand, within CSW01_14150at 25.387 kb on - strand, within CSW01_14150at 25.387 kb on - strand, within CSW01_14150at 25.387 kb on - strand, within CSW01_14150at 25.402 kb on + strand, within CSW01_14150at 25.405 kb on - strand, within CSW01_14150at 25.410 kb on - strand, within CSW01_14150at 25.525 kb on + strand, within CSW01_14150at 25.547 kb on - strand, within CSW01_14150at 25.548 kb on - strand, within CSW01_14150at 25.702 kb on - strand, within CSW01_14150at 25.745 kb on - strand, within CSW01_14150at 25.788 kb on + strand, within CSW01_14150at 25.842 kb on - strand, within CSW01_14150at 25.998 kb on + strand, within CSW01_14150at 25.998 kb on + strand, within CSW01_14150at 25.998 kb on + strand, within CSW01_14150at 25.998 kb on + strand, within CSW01_14150at 25.998 kb on + strand, within CSW01_14150at 26.006 kb on - strand, within CSW01_14150at 26.006 kb on - strand, within CSW01_14150at 26.006 kb on - strand, within CSW01_14150at 26.006 kb on - strand, within CSW01_14150at 26.006 kb on - strand, within CSW01_14150at 26.021 kb on + strand, within CSW01_14150at 26.032 kb on - strand, within CSW01_14150at 26.054 kb on - strand, within CSW01_14150at 26.238 kb on - strand, within CSW01_14150at 26.255 kb on + strand, within CSW01_14150at 26.255 kb on + strand, within CSW01_14150at 26.255 kb on + strand, within CSW01_14150at 26.263 kb on - strand, within CSW01_14150at 26.263 kb on - strand, within CSW01_14150at 26.263 kb on - strand, within CSW01_14150at 26.263 kb on - strand, within CSW01_14150at 26.268 kb on - strand, within CSW01_14150at 26.333 kb on + strandat 26.352 kb on - strandat 26.380 kb on - strandat 26.407 kb on + strandat 26.415 kb on - strandat 26.415 kb on - strandat 26.415 kb on - strandat 26.415 kb on - strandat 26.415 kb on - strandat 26.427 kb on + strandat 26.430 kb on - strandat 26.435 kb on - strandat 26.470 kb on + strandat 26.470 kb on + strandat 26.470 kb on + strandat 26.470 kb on + strandat 26.478 kb on - strandat 26.480 kb on + strandat 26.517 kb on + strandat 26.533 kb on + strandat 26.549 kb on - strandat 26.606 kb on + strandat 27.380 kb on + strandat 27.388 kb on - strandat 27.448 kb on - strandat 27.490 kb on + strandat 27.490 kb on + strandat 27.495 kb on + strandat 27.495 kb on + strandat 27.495 kb on + strandat 27.596 kb on - strand, within CSW01_14160at 27.623 kb on + strand, within CSW01_14160at 27.623 kb on + strand, within CSW01_14160at 27.631 kb on - strand, within CSW01_14160at 27.631 kb on - strand, within CSW01_14160

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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22,404 + -0.6
22,425 - +0.8
22,439 - -3.3
22,456 + +0.4
22,464 + -1.0
22,464 + -0.2
22,472 - +1.0
22,484 - +0.9
22,495 + +0.5
22,531 + -3.9
22,534 + +0.5
22,542 - -0.3
22,542 - -1.5
22,542 - -1.2
22,698 + CSW01_14145 0.21 -0.1
22,698 + CSW01_14145 0.21 -0.4
22,698 + CSW01_14145 0.21 +0.4
22,854 + CSW01_14145 0.39 +0.3
22,862 + CSW01_14145 0.40 +0.6
22,862 - CSW01_14145 0.40 -0.2
22,969 + CSW01_14145 0.52 -0.0
23,002 - CSW01_14145 0.55 -0.3
23,019 - CSW01_14145 0.57 -0.9
23,029 - CSW01_14145 0.58 -2.0
23,079 + CSW01_14145 0.64 +1.1
23,079 + CSW01_14145 0.64 -0.3
23,079 + CSW01_14145 0.64 -1.8
23,087 + CSW01_14145 0.65 -2.0
23,087 - CSW01_14145 0.65 +2.0
23,121 - CSW01_14145 0.69 +0.9
23,148 + CSW01_14145 0.72 +1.8
23,224 - CSW01_14145 0.80 +0.4
23,244 - CSW01_14145 0.83 +0.1
23,341 - +0.4
23,358 - -0.4
23,386 + +1.4
23,386 + +1.5
23,394 - -2.9
23,394 - +2.0
23,432 - +0.1
23,437 - +0.7
23,506 + +1.5
23,613 - -2.4
23,638 - -1.9
23,676 + +0.1
23,779 + CSW01_14150 0.12 -1.2
23,785 - CSW01_14150 0.12 +1.1
23,797 - CSW01_14150 0.12 +0.4
23,833 - CSW01_14150 0.13 +0.6
23,843 - CSW01_14150 0.14 -2.0
23,869 + CSW01_14150 0.15 +1.6
23,874 + CSW01_14150 0.15 +0.4
23,893 + CSW01_14150 0.15 +0.1
23,896 - CSW01_14150 0.15 +2.6
23,901 - CSW01_14150 0.16 +3.7
23,924 + CSW01_14150 0.16 +0.3
23,947 + CSW01_14150 0.17 -1.3
24,325 + CSW01_14150 0.29 -0.4
24,461 + CSW01_14150 0.33 +0.8
24,512 + CSW01_14150 0.34 -2.0
24,518 - CSW01_14150 0.34 -1.0
24,520 + CSW01_14150 0.35 -0.9
24,528 - CSW01_14150 0.35 +0.6
24,605 + CSW01_14150 0.37 -0.4
24,613 - CSW01_14150 0.37 -1.9
24,613 - CSW01_14150 0.37 +0.8
24,613 - CSW01_14150 0.37 -0.4
24,632 - CSW01_14150 0.38 +1.4
24,632 - CSW01_14150 0.38 +1.6
24,633 + CSW01_14150 0.38 -2.8
24,657 + CSW01_14150 0.39 -3.4
24,659 + CSW01_14150 0.39 -0.7
24,659 + CSW01_14150 0.39 -0.1
24,678 + CSW01_14150 0.39 +1.3
24,678 - CSW01_14150 0.39 +0.5
24,685 + CSW01_14150 0.40 -1.7
24,687 - CSW01_14150 0.40 -0.3
24,693 - CSW01_14150 0.40 -0.8
24,723 - CSW01_14150 0.41 +1.5
24,790 - CSW01_14150 0.43 +1.6
24,909 + CSW01_14150 0.47 -2.5
24,917 - CSW01_14150 0.47 -3.4
25,043 + CSW01_14150 0.51 -1.9
25,076 + CSW01_14150 0.52 +0.1
25,106 + CSW01_14150 0.53 +0.3
25,151 + CSW01_14150 0.54 -3.0
25,151 + CSW01_14150 0.54 -0.6
25,159 - CSW01_14150 0.54 +0.6
25,159 - CSW01_14150 0.54 +0.1
25,196 - CSW01_14150 0.55 +1.5
25,243 - CSW01_14150 0.57 -2.1
25,312 - CSW01_14150 0.59 +0.2
25,379 + CSW01_14150 0.61 +1.8
25,379 + CSW01_14150 0.61 -1.8
25,387 - CSW01_14150 0.61 +0.1
25,387 - CSW01_14150 0.61 +1.6
25,387 - CSW01_14150 0.61 -2.7
25,402 + CSW01_14150 0.62 +0.5
25,405 - CSW01_14150 0.62 -0.2
25,410 - CSW01_14150 0.62 +0.0
25,525 + CSW01_14150 0.65 -0.0
25,547 - CSW01_14150 0.66 +1.3
25,548 - CSW01_14150 0.66 +0.8
25,702 - CSW01_14150 0.71 -0.0
25,745 - CSW01_14150 0.72 +0.1
25,788 + CSW01_14150 0.73 -0.3
25,842 - CSW01_14150 0.75 -3.0
25,998 + CSW01_14150 0.80 -0.3
25,998 + CSW01_14150 0.80 +0.6
25,998 + CSW01_14150 0.80 +0.2
25,998 + CSW01_14150 0.80 +0.9
25,998 + CSW01_14150 0.80 +0.1
26,006 - CSW01_14150 0.80 -0.4
26,006 - CSW01_14150 0.80 +1.5
26,006 - CSW01_14150 0.80 +0.6
26,006 - CSW01_14150 0.80 +1.1
26,006 - CSW01_14150 0.80 -0.3
26,021 + CSW01_14150 0.81 -0.6
26,032 - CSW01_14150 0.81 +0.8
26,054 - CSW01_14150 0.82 -2.3
26,238 - CSW01_14150 0.87 -0.9
26,255 + CSW01_14150 0.88 +1.5
26,255 + CSW01_14150 0.88 -1.6
26,255 + CSW01_14150 0.88 +0.7
26,263 - CSW01_14150 0.88 +0.7
26,263 - CSW01_14150 0.88 -2.2
26,263 - CSW01_14150 0.88 -1.1
26,263 - CSW01_14150 0.88 +0.9
26,268 - CSW01_14150 0.88 +0.1
26,333 + -2.9
26,352 - +0.5
26,380 - +1.1
26,407 + +1.0
26,415 - +0.3
26,415 - -0.0
26,415 - +0.8
26,415 - -1.5
26,415 - -0.8
26,427 + +0.6
26,430 - +0.5
26,435 - -2.0
26,470 + +1.5
26,470 + -0.0
26,470 + +0.3
26,470 + -0.1
26,478 - -0.3
26,480 + +0.9
26,517 + -0.2
26,533 + +1.2
26,549 - +1.1
26,606 + +0.0
27,380 + +2.2
27,388 - -1.1
27,448 - -2.2
27,490 + -0.1
27,490 + +2.4
27,495 + -0.6
27,495 + +0.1
27,495 + +1.5
27,596 - CSW01_14160 0.28 -0.6
27,623 + CSW01_14160 0.35 +0.0
27,623 + CSW01_14160 0.35 +0.1
27,631 - CSW01_14160 0.37 +1.2
27,631 - CSW01_14160 0.37 -0.0

Or see this region's nucleotide sequence