Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13605

Experiment: ICP1_phage_23.5_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_23.5_MOI_rep2
2,893,151	+		CSW01_13595	0.89	-1.7
2,893,151	+		CSW01_13595	0.89	+1.1
2,893,159	-		CSW01_13595	0.89	+1.6
2,893,159	-		CSW01_13595	0.89	-1.8
2,893,159	-		CSW01_13595	0.89	-0.8
2,893,175	-				+1.8
2,893,188	+				+0.4
2,893,188	+				-0.7
2,893,188	+				+0.1
2,893,194	+				-0.3
2,893,196	-				+1.8
2,893,196	-				+0.7
2,893,196	-				-1.3
2,893,221	+				+0.7
2,893,221	+				+2.6
2,893,229	-				-1.9
2,893,233	+				-0.3
2,893,241	-				+0.5
2,893,241	-				+1.7
2,893,243	+				+0.9
2,893,266	+				-3.4
2,893,267	+				-3.1
2,893,267	+				-0.5
2,893,284	+				-2.4
2,893,295	+				-0.6
2,893,411	-				-1.0
2,893,433	+				+1.2
2,893,463	+		CSW01_13600	0.11	+1.0
2,893,463	+		CSW01_13600	0.11	-0.1
2,893,463	+		CSW01_13600	0.11	-0.8
2,893,471	-		CSW01_13600	0.12	-3.7
2,893,471	-		CSW01_13600	0.12	-1.2
2,893,471	-		CSW01_13600	0.12	-3.2
2,893,616	+		CSW01_13600	0.34	+0.1
2,893,625	-		CSW01_13600	0.35	-0.2
2,893,647	-		CSW01_13600	0.39	-2.3
2,893,682	-		CSW01_13600	0.44	-3.8
2,893,685	-		CSW01_13600	0.44	+1.2
2,893,687	+		CSW01_13600	0.45	-0.7
2,893,687	+		CSW01_13600	0.45	-2.5
2,893,687	+		CSW01_13600	0.45	+0.4
2,893,687	+		CSW01_13600	0.45	-3.4
2,893,687	+		CSW01_13600	0.45	-3.7
2,893,687	+		CSW01_13600	0.45	+0.1
2,893,687	+		CSW01_13600	0.45	-0.7
2,893,694	+		CSW01_13600	0.46	-0.2
2,893,694	+		CSW01_13600	0.46	+0.8
2,893,695	-		CSW01_13600	0.46	-2.0
2,893,702	-		CSW01_13600	0.47	-2.8
2,893,708	-		CSW01_13600	0.48	+0.8
2,893,734	+		CSW01_13600	0.52	+0.4
2,893,764	-		CSW01_13600	0.56	-5.0
2,893,766	+		CSW01_13600	0.56	+0.1
2,893,766	+		CSW01_13600	0.56	+0.1
2,893,766	+		CSW01_13600	0.56	-2.3
2,893,766	+		CSW01_13600	0.56	+1.1
2,893,766	+		CSW01_13600	0.56	+0.4
2,893,766	+		CSW01_13600	0.56	-2.1
2,893,766	+		CSW01_13600	0.56	-3.6
2,893,766	+		CSW01_13600	0.56	+1.0
2,893,766	+		CSW01_13600	0.56	-3.6
2,893,766	+		CSW01_13600	0.56	-1.6
2,893,766	+		CSW01_13600	0.56	+0.5
2,893,766	+		CSW01_13600	0.56	+1.8
2,893,774	-		CSW01_13600	0.58	-0.1
2,893,774	-		CSW01_13600	0.58	+1.6
2,893,774	-		CSW01_13600	0.58	+0.1
2,893,774	-		CSW01_13600	0.58	-3.1
2,893,774	-		CSW01_13600	0.58	+0.9
2,893,774	-		CSW01_13600	0.58	-2.3
2,893,774	-		CSW01_13600	0.58	+0.8
2,893,774	-		CSW01_13600	0.58	-0.4
2,893,774	-		CSW01_13600	0.58	+2.5
2,893,774	-		CSW01_13600	0.58	-1.5
2,893,774	-		CSW01_13600	0.58	-1.1
2,893,774	-		CSW01_13600	0.58	-3.5
2,893,774	-		CSW01_13600	0.58	+0.8
2,893,774	-		CSW01_13600	0.58	-2.4
2,893,774	-		CSW01_13600	0.58	+1.6
2,893,774	-		CSW01_13600	0.58	+0.6
2,893,774	-		CSW01_13600	0.58	+0.6
2,893,774	-		CSW01_13600	0.58	+0.5
2,893,791	+		CSW01_13600	0.60	-0.8
2,893,801	+		CSW01_13600	0.62	+1.2
2,893,804	-		CSW01_13600	0.62	+0.3
2,893,809	-		CSW01_13600	0.63	-2.0
2,893,822	+		CSW01_13600	0.65	+0.5
2,893,847	+		CSW01_13600	0.68	-0.5
2,893,855	-		CSW01_13600	0.70	+1.6
2,893,885	-		CSW01_13600	0.74	+1.0
2,893,899	-		CSW01_13600	0.76	+0.4
2,893,921	+		CSW01_13600	0.80	-2.3
2,893,921	+		CSW01_13600	0.80	+2.2
2,893,923	-		CSW01_13600	0.80	+0.4
2,893,964	+		CSW01_13600	0.86	-0.9
2,893,976	+		CSW01_13600	0.88	-1.5
2,893,998	+				+0.3
2,894,003	-				-1.2
2,894,008	+				-0.2
2,894,042	+				-3.7
2,894,042	+				-1.7
2,894,042	+				-0.1
2,894,042	+				+1.7
2,894,045	-				+0.9
2,894,050	-				+2.9
2,894,060	-				+1.0
2,894,060	-				-0.8
2,894,069	+				+1.6
2,894,069	+				-3.4
2,894,077	-				-2.8
2,894,077	-				-0.5
2,894,077	-				-1.8
2,894,077	-				-2.1
2,894,077	-				-3.1
2,894,077	-				+1.1
2,894,079	+				+0.7
2,894,134	+				+1.9
2,894,222	-		CSW01_13605	0.23	+2.0
2,894,224	-		CSW01_13605	0.24	-3.0
2,894,266	+		CSW01_13605	0.33	-0.2
2,894,274	-		CSW01_13605	0.34	+1.2
2,894,286	+		CSW01_13605	0.37	+1.6
2,894,366	+		CSW01_13605	0.54	-0.3
2,894,402	+		CSW01_13605	0.61	-3.0
2,894,449	-		CSW01_13605	0.71	-2.7
2,894,510	+		CSW01_13605	0.84	-2.7
2,894,510	+		CSW01_13605	0.84	+0.2
2,894,510	+		CSW01_13605	0.84	+1.0
2,894,510	+		CSW01_13605	0.84	+0.2
2,894,510	+		CSW01_13605	0.84	+0.3
2,894,510	+		CSW01_13605	0.84	+0.8
2,894,510	+		CSW01_13605	0.84	-0.9
2,894,510	+		CSW01_13605	0.84	-2.7
2,894,510	+		CSW01_13605	0.84	+0.9
2,894,510	+		CSW01_13605	0.84	-0.4
2,894,510	+		CSW01_13605	0.84	-0.1
2,894,510	+		CSW01_13605	0.84	+1.1
2,894,510	+		CSW01_13605	0.84	+1.3
2,894,510	+		CSW01_13605	0.84	+1.0
2,894,510	+		CSW01_13605	0.84	+0.3
2,894,510	+		CSW01_13605	0.84	+0.3
2,894,510	+		CSW01_13605	0.84	-0.2
2,894,510	+		CSW01_13605	0.84	+1.6
2,894,510	+		CSW01_13605	0.84	-0.2
2,894,510	+		CSW01_13605	0.84	-0.8
2,894,510	+		CSW01_13605	0.84	+1.2
2,894,518	-		CSW01_13605	0.86	-3.0
2,894,518	-		CSW01_13605	0.86	+1.8
2,894,518	-		CSW01_13605	0.86	+0.3
2,894,518	-		CSW01_13605	0.86	+0.8
2,894,518	-		CSW01_13605	0.86	+0.7
2,894,518	-		CSW01_13605	0.86	+0.6
2,894,518	-		CSW01_13605	0.86	+1.1
2,894,518	-		CSW01_13605	0.86	+1.5
2,894,518	-		CSW01_13605	0.86	-4.0
2,894,518	-		CSW01_13605	0.86	-3.5
2,894,518	-		CSW01_13605	0.86	-1.8
2,894,518	-		CSW01_13605	0.86	-1.1
2,894,518	-		CSW01_13605	0.86	+1.2
2,894,518	-		CSW01_13605	0.86	+0.3
2,894,518	-		CSW01_13605	0.86	-4.7
2,894,518	-		CSW01_13605	0.86	+3.3
2,894,518	-		CSW01_13605	0.86	-0.4
2,894,518	-		CSW01_13605	0.86	-0.5
2,894,518	-		CSW01_13605	0.86	+1.0
2,894,518	-		CSW01_13605	0.86	-2.9
2,894,518	-		CSW01_13605	0.86	-0.0
2,894,581	+				-0.5
2,894,581	+				+1.7
2,894,581	+				+1.2
2,894,581	+				+0.1
2,894,581	+				-0.7
2,894,581	+				-1.1
2,894,581	+				-0.7
2,894,581	+				-1.3
2,894,581	+				-2.3
2,894,581	+				+2.1
2,894,581	+				-2.3
2,894,581	+				+1.6
2,894,589	-				+1.0
2,894,589	-				-3.7
2,894,617	-				+0.4
2,894,632	+				-3.8
2,894,640	-				-3.5
2,894,640	-				+0.3
2,894,667	+				+0.2
2,894,708	+		CSW01_13610	0.18	+0.9
2,894,708	+		CSW01_13610	0.18	-3.3
2,894,708	+		CSW01_13610	0.18	+1.4
2,894,708	+		CSW01_13610	0.18	-2.7
2,894,708	+		CSW01_13610	0.18	-0.3
2,894,716	-		CSW01_13610	0.20	+0.6
2,894,716	-		CSW01_13610	0.20	+0.0
2,894,718	+		CSW01_13610	0.20	+0.1
2,894,718	+		CSW01_13610	0.20	-0.3
2,894,726	-		CSW01_13610	0.22	-0.8
2,894,745	-		CSW01_13610	0.26	+0.8
2,894,747	+		CSW01_13610	0.26	-4.0
2,894,765	-		CSW01_13610	0.30	+1.1
2,894,765	-		CSW01_13610	0.30	-1.3
2,894,838	+		CSW01_13610	0.45	-1.0
2,894,846	-		CSW01_13610	0.47	-0.8
2,894,874	+		CSW01_13610	0.52	+0.9
2,894,874	+		CSW01_13610	0.52	-0.8
2,894,874	+		CSW01_13610	0.52	+1.0
2,894,874	+		CSW01_13610	0.52	+0.1
2,894,883	-		CSW01_13610	0.54	+1.0
2,894,911	+		CSW01_13610	0.60	+0.3
2,894,919	-		CSW01_13610	0.62	+0.4
2,894,919	-		CSW01_13610	0.62	-3.1
2,894,919	-		CSW01_13610	0.62	-2.9
2,894,928	+		CSW01_13610	0.63	+0.7
2,894,931	-		CSW01_13610	0.64	+1.2
2,894,992	+		CSW01_13610	0.77	+0.3
2,894,997	+		CSW01_13610	0.78	+1.0
2,894,997	+		CSW01_13610	0.78	-1.3
2,894,997	+		CSW01_13610	0.78	-4.9
2,895,003	+		CSW01_13610	0.79	+2.0
2,895,005	-		CSW01_13610	0.79	-3.9
2,895,015	+		CSW01_13610	0.81	-3.3
2,895,015	+		CSW01_13610	0.81	-0.5
2,895,015	+		CSW01_13610	0.81	+2.0
2,895,015	+		CSW01_13610	0.81	-0.7
2,895,103	+				-1.2
2,895,128	+				-1.3
2,895,132	+				+0.4
2,895,135	-				-2.5
2,895,253	+				+1.5
2,895,261	-				+0.7
2,895,298	+		CSW01_13615	0.11	+0.2
2,895,305	+		CSW01_13615	0.12	+0.8
2,895,310	+		CSW01_13615	0.12	-0.7
2,895,310	+		CSW01_13615	0.12	+1.1
2,895,310	+		CSW01_13615	0.12	-1.5
2,895,310	+		CSW01_13615	0.12	-1.1
2,895,310	+		CSW01_13615	0.12	-2.6
2,895,310	+		CSW01_13615	0.12	-4.3
2,895,310	+		CSW01_13615	0.12	-3.0
2,895,318	-		CSW01_13615	0.13	-4.4
2,895,318	-		CSW01_13615	0.13	+0.1
2,895,318	-		CSW01_13615	0.13	+0.4
2,895,318	-		CSW01_13615	0.13	-3.3
2,895,318	-		CSW01_13615	0.13	-4.5
2,895,318	-		CSW01_13615	0.13	+1.4
2,895,343	-		CSW01_13615	0.16	-1.5
2,895,343	-		CSW01_13615	0.16	+0.7
2,895,357	+		CSW01_13615	0.17	-0.7
2,895,364	+		CSW01_13615	0.18	+0.2
2,895,369	+		CSW01_13615	0.18	-1.8
2,895,370	-		CSW01_13615	0.18	-3.1
2,895,370	-		CSW01_13615	0.18	-2.2
2,895,378	+		CSW01_13615	0.19	-2.6
2,895,421	+		CSW01_13615	0.24	-0.0
2,895,429	-		CSW01_13615	0.25	+3.0
2,895,450	+		CSW01_13615	0.27	+0.1
2,895,462	+		CSW01_13615	0.28	+0.7
2,895,462	+		CSW01_13615	0.28	+0.5
2,895,467	+		CSW01_13615	0.29	+1.6
2,895,470	-		CSW01_13615	0.29	-3.0
2,895,470	-		CSW01_13615	0.29	+0.3
2,895,482	+		CSW01_13615	0.30	-1.3
2,895,485	-		CSW01_13615	0.31	-2.6
2,895,514	+		CSW01_13615	0.34	+0.6
2,895,522	-		CSW01_13615	0.35	+0.5