Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13560

Experiment: ICP1_phage_23.5_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_23.5_MOI_rep2
2,884,624	-		CSW01_13555	0.71	+1.3
2,884,682	+		CSW01_13555	0.73	-0.4
2,884,690	-		CSW01_13555	0.74	-0.8
2,884,698	+		CSW01_13555	0.74	+1.7
2,884,725	+		CSW01_13555	0.75	+0.3
2,884,725	+		CSW01_13555	0.75	-3.2
2,884,817	-		CSW01_13555	0.79	+1.0
2,884,828	+		CSW01_13555	0.80	+0.7
2,884,861	+		CSW01_13555	0.81	+1.8
2,884,862	-		CSW01_13555	0.81	+0.1
2,884,869	-		CSW01_13555	0.81	+0.6
2,884,869	-		CSW01_13555	0.81	-1.3
2,884,869	-		CSW01_13555	0.81	+0.1
2,884,897	+		CSW01_13555	0.82	+0.4
2,884,897	+		CSW01_13555	0.82	+1.5
2,884,897	+		CSW01_13555	0.82	-1.4
2,884,897	+		CSW01_13555	0.82	-0.4
2,884,897	+		CSW01_13555	0.82	-0.1
2,884,897	+		CSW01_13555	0.82	+0.1
2,884,897	+		CSW01_13555	0.82	+0.3
2,884,905	-		CSW01_13555	0.83	-0.5
2,884,905	-		CSW01_13555	0.83	+1.3
2,884,905	-		CSW01_13555	0.83	-1.3
2,884,905	-		CSW01_13555	0.83	+0.4
2,884,905	-		CSW01_13555	0.83	+1.2
2,884,905	-		CSW01_13555	0.83	-0.0
2,884,905	-		CSW01_13555	0.83	-4.0
2,884,905	-		CSW01_13555	0.83	-0.5
2,884,905	-		CSW01_13555	0.83	+1.0
2,884,905	-		CSW01_13555	0.83	-0.8
2,884,905	-		CSW01_13555	0.83	-3.4
2,884,941	+		CSW01_13555	0.84	-1.0
2,884,944	-		CSW01_13555	0.84	+0.0
2,884,944	-		CSW01_13555	0.84	-2.9
2,884,953	-		CSW01_13555	0.85	-0.2
2,884,978	+		CSW01_13555	0.86	+0.8
2,884,987	-		CSW01_13555	0.86	-0.0
2,884,992	+		CSW01_13555	0.86	-0.7
2,885,002	+		CSW01_13555	0.87	+1.2
2,885,010	-		CSW01_13555	0.87	-1.3
2,885,010	-		CSW01_13555	0.87	+1.6
2,885,010	-		CSW01_13555	0.87	+0.1
2,885,010	-		CSW01_13555	0.87	-3.3
2,885,010	-		CSW01_13555	0.87	+1.5
2,885,010	-		CSW01_13555	0.87	+1.4
2,885,010	-		CSW01_13555	0.87	-2.1
2,885,068	+		CSW01_13555	0.89	-0.4
2,885,078	+		CSW01_13555	0.90	-2.6
2,885,091	+				-1.0
2,885,099	-				-1.3
2,885,112	-				+1.3
2,885,179	-				-0.3
2,885,198	-				-1.3
2,885,225	+				-0.5
2,885,285	-				+1.2
2,885,309	-				-1.2
2,885,316	+				-0.1
2,885,316	+				-2.3
2,885,323	-				-0.1
2,885,350	-				-0.1
2,885,375	+				+0.5
2,885,388	-				-0.8
2,885,413	-				-3.1
2,885,430	+				+1.1
2,885,430	+				-3.4
2,885,430	+				-0.1
2,885,432	+				-3.7
2,885,432	+				+1.4
2,885,438	-				+0.8
2,885,440	-				+1.2
2,885,440	-				-2.6
2,885,440	-				-1.0
2,885,440	-				+0.3
2,885,518	-				+0.6
2,885,518	-				-1.1
2,885,587	-				-0.3
2,885,589	-				+0.8
2,885,591	+				+0.5
2,885,591	+				+0.9
2,885,591	+				-2.7
2,885,591	+				+0.7
2,885,591	+				-0.3
2,885,599	-				+0.6
2,885,599	-				-0.7
2,885,599	-				+0.4
2,885,609	-				+1.2
2,885,620	-				-0.5
2,885,634	-				-3.3
2,885,734	+		CSW01_13560	0.14	+1.4
2,885,734	+		CSW01_13560	0.14	-3.0
2,885,810	+		CSW01_13560	0.23	-3.4
2,885,810	+		CSW01_13560	0.23	-4.0
2,885,813	-		CSW01_13560	0.23	+1.0
2,885,874	-		CSW01_13560	0.30	-2.7
2,885,874	-		CSW01_13560	0.30	-2.8
2,885,907	-		CSW01_13560	0.34	-0.7
2,885,960	+		CSW01_13560	0.40	+1.0
2,885,963	-		CSW01_13560	0.40	+0.9
2,885,999	+		CSW01_13560	0.44	-1.8
2,886,007	-		CSW01_13560	0.45	+1.5
2,886,018	+		CSW01_13560	0.46	-0.1
2,886,018	+		CSW01_13560	0.46	-1.3
2,886,026	-		CSW01_13560	0.47	+0.6
2,886,026	-		CSW01_13560	0.47	-0.2
2,886,026	-		CSW01_13560	0.47	-3.9
2,886,072	+		CSW01_13560	0.52	+0.6
2,886,097	+		CSW01_13560	0.55	+0.3
2,886,122	-		CSW01_13560	0.58	-0.4
2,886,203	-		CSW01_13560	0.67	-2.2
2,886,277	+		CSW01_13560	0.75	+3.8
2,886,280	-		CSW01_13560	0.76	+0.3
2,886,285	-		CSW01_13560	0.76	+0.3
2,886,285	-		CSW01_13560	0.76	-0.5
2,886,295	+		CSW01_13560	0.77	+0.3
2,886,310	+		CSW01_13560	0.79	-2.3
2,886,326	-		CSW01_13560	0.81	-1.8
2,886,334	-		CSW01_13560	0.82	-0.8
2,886,354	+		CSW01_13560	0.84	-2.9
2,886,370	-		CSW01_13560	0.86	-1.5
2,886,396	+		CSW01_13560	0.89	-0.4
2,886,404	-		CSW01_13560	0.90	+1.5
2,886,414	-				-2.6
2,886,431	+				-0.1
2,886,431	+				+0.8
2,886,439	-				-0.4
2,886,468	+				+0.1
2,886,470	+				+2.3
2,886,470	+				+0.5
2,886,470	+				+0.6
2,886,470	+				+0.1
2,886,470	+				-0.9
2,886,478	-				+1.0
2,886,478	-				-2.7
2,886,478	-				-0.2
2,886,478	-				+0.8
2,886,478	-				-2.9
2,886,478	-				+2.7
2,886,478	-				-1.3
2,886,478	-				-1.3
2,886,478	-				+0.6
2,886,478	-				+0.6
2,886,652	-		CSW01_13565	0.39	-0.5
2,886,737	+		CSW01_13565	0.74	+0.9
2,886,737	+		CSW01_13565	0.74	+0.8
2,886,745	-		CSW01_13565	0.77	-4.1
2,886,745	-		CSW01_13565	0.77	-2.8
2,886,745	-		CSW01_13565	0.77	-3.8
2,886,804	-				+0.5
2,886,812	-				+0.9
2,886,812	-				-0.9
2,886,837	+				+0.5
2,886,851	+				-0.5
2,886,857	+				-0.5
2,886,862	+				-0.1
2,886,862	+				-1.1
2,886,862	+				+0.5
2,886,867	+				+0.1
2,886,870	-				-0.0
2,886,870	-				+0.2
2,886,870	-				+2.1
2,886,870	-				+1.5
2,886,870	-				+0.1
2,886,870	-				-1.5
2,886,870	-				-0.1
2,886,870	-				-3.4
2,886,870	-				-3.3
2,886,872	+				+2.2
2,886,875	-				-0.7
2,886,875	-				+0.3
2,886,875	-				-0.2
2,886,875	-				-3.6
2,886,943	+				+1.0
2,886,955	-				+0.2
2,887,034	-				-0.2
2,887,103	+				+0.5
2,887,121	-				-3.5
2,887,186	-				+0.5
2,887,249	+		CSW01_13570	0.13	+0.1
2,887,262	-		CSW01_13570	0.14	-1.0
2,887,313	+		CSW01_13570	0.19	+1.4
2,887,318	+		CSW01_13570	0.20	-1.2
2,887,318	+		CSW01_13570	0.20	-0.9
2,887,383	-		CSW01_13570	0.26	+0.4
2,887,406	-		CSW01_13570	0.28	+0.7
2,887,408	+		CSW01_13570	0.28	+2.5
2,887,408	+		CSW01_13570	0.28	-1.7
2,887,416	+		CSW01_13570	0.29	-1.3
2,887,416	-		CSW01_13570	0.29	-1.6