Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12025

Experiment: ICP1_phage_23.5_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_23.5_MOI_rep2
2,566,227	+		CSW01_12020	0.82	+1.4
2,566,251	-		CSW01_12020	0.82	+0.5
2,566,274	+		CSW01_12020	0.83	-3.6
2,566,283	-		CSW01_12020	0.83	+1.7
2,566,286	+		CSW01_12020	0.83	+0.0
2,566,293	+		CSW01_12020	0.83	-1.4
2,566,293	+		CSW01_12020	0.83	-1.6
2,566,298	+		CSW01_12020	0.83	+2.6
2,566,303	+		CSW01_12020	0.84	+0.9
2,566,306	-		CSW01_12020	0.84	+1.6
2,566,306	-		CSW01_12020	0.84	-2.3
2,566,331	+		CSW01_12020	0.84	-2.1
2,566,373	-		CSW01_12020	0.85	+0.2
2,566,375	+		CSW01_12020	0.85	-0.2
2,566,375	+		CSW01_12020	0.85	+1.3
2,566,375	+		CSW01_12020	0.85	-2.7
2,566,383	-		CSW01_12020	0.85	-0.1
2,566,383	-		CSW01_12020	0.85	+0.5
2,566,383	-		CSW01_12020	0.85	-2.3
2,566,383	-		CSW01_12020	0.85	+1.3
2,566,383	-		CSW01_12020	0.85	+0.4
2,566,383	-		CSW01_12020	0.85	-3.5
2,566,446	+		CSW01_12020	0.87	+2.4
2,566,468	+		CSW01_12020	0.87	-0.3
2,566,502	-		CSW01_12020	0.88	+0.5
2,566,517	+		CSW01_12020	0.88	-2.7
2,566,519	+		CSW01_12020	0.88	-0.6
2,566,544	-		CSW01_12020	0.89	-2.3
2,566,589	-		CSW01_12020	0.90	-1.9
2,566,702	+				-3.2
2,566,718	+				-0.7
2,566,718	-				+0.2
2,566,744	+				-0.3
2,566,777	-				+0.2
2,566,786	-				+0.3
2,566,799	-				-0.1
2,566,839	+				+0.8
2,566,928	-				+0.3
2,566,928	-				+0.2
2,566,951	+				-1.9
2,566,951	+				-0.0
2,566,959	-				-4.7
2,566,959	-				-2.9
2,566,959	-				-1.7
2,566,959	-				+0.8
2,566,965	+				-0.9
2,566,965	+				-3.7
2,566,965	+				-0.3
2,566,973	-				-2.0
2,566,973	-				+1.3
2,566,973	-				-3.4
2,566,973	-				+0.1
2,566,973	-				-2.0
2,566,999	+				-2.7
2,567,014	+				+0.5
2,567,020	-				+1.6
2,567,022	-				-2.7
2,567,111	+				-1.9
2,567,185	+				-0.2
2,567,185	+				-0.4
2,567,185	+				-2.2
2,567,221	+		CSW01_12025	0.11	-0.7
2,567,222	-		CSW01_12025	0.11	-0.1
2,567,244	+		CSW01_12025	0.13	-1.5
2,567,244	+		CSW01_12025	0.13	-0.4
2,567,252	-		CSW01_12025	0.13	+1.2
2,567,269	+		CSW01_12025	0.14	+0.7
2,567,269	+		CSW01_12025	0.14	+1.1
2,567,310	-		CSW01_12025	0.17	-0.9
2,567,348	+		CSW01_12025	0.20	+0.3
2,567,348	+		CSW01_12025	0.20	-1.3
2,567,348	+		CSW01_12025	0.20	-0.3
2,567,348	+		CSW01_12025	0.20	+0.8
2,567,348	+		CSW01_12025	0.20	-3.4
2,567,348	+		CSW01_12025	0.20	-1.6
2,567,348	+		CSW01_12025	0.20	-0.3
2,567,348	+		CSW01_12025	0.20	-3.5
2,567,348	+		CSW01_12025	0.20	+1.0
2,567,356	-		CSW01_12025	0.20	+0.4
2,567,356	-		CSW01_12025	0.20	-1.7
2,567,356	-		CSW01_12025	0.20	-1.0
2,567,356	-		CSW01_12025	0.20	+0.3
2,567,366	-		CSW01_12025	0.21	-2.0
2,567,369	+		CSW01_12025	0.21	+1.3
2,567,457	-		CSW01_12025	0.27	-1.1
2,567,473	+		CSW01_12025	0.28	-3.2
2,567,524	-		CSW01_12025	0.32	-0.9
2,567,541	+		CSW01_12025	0.33	+0.6
2,567,544	-		CSW01_12025	0.33	-2.4
2,567,549	-		CSW01_12025	0.34	+0.7
2,567,549	-		CSW01_12025	0.34	-2.5
2,567,562	-		CSW01_12025	0.34	-3.3
2,567,633	+		CSW01_12025	0.39	-2.3
2,567,633	+		CSW01_12025	0.39	-3.5
2,567,639	-		CSW01_12025	0.40	-0.3
2,567,723	-		CSW01_12025	0.45	-2.9
2,567,742	-		CSW01_12025	0.47	+1.5
2,567,768	+		CSW01_12025	0.48	+1.2
2,567,776	-		CSW01_12025	0.49	-2.2
2,567,882	+		CSW01_12025	0.56	+1.0
2,567,957	+		CSW01_12025	0.61	+0.9
2,567,965	-		CSW01_12025	0.62	+1.0
2,568,030	+		CSW01_12025	0.66	+1.3
2,568,038	-		CSW01_12025	0.67	+0.1
2,568,038	-		CSW01_12025	0.67	-0.2
2,568,068	+		CSW01_12025	0.69	+0.4
2,568,068	+		CSW01_12025	0.69	-2.3
2,568,068	+		CSW01_12025	0.69	-1.7
2,568,068	+		CSW01_12025	0.69	+1.4
2,568,068	+		CSW01_12025	0.69	-0.1
2,568,068	+		CSW01_12025	0.69	-2.5
2,568,068	+		CSW01_12025	0.69	+0.6
2,568,076	-		CSW01_12025	0.69	-2.4
2,568,076	-		CSW01_12025	0.69	+0.4
2,568,076	-		CSW01_12025	0.69	+0.4
2,568,076	-		CSW01_12025	0.69	+2.5
2,568,108	-		CSW01_12025	0.72	-2.1
2,568,154	+		CSW01_12025	0.75	-0.4
2,568,154	+		CSW01_12025	0.75	+0.1
2,568,157	-		CSW01_12025	0.75	+0.2
2,568,184	+		CSW01_12025	0.77	+0.3
2,568,220	+		CSW01_12025	0.79	+0.4
2,568,228	-		CSW01_12025	0.80	-2.4
2,568,279	-		CSW01_12025	0.83	+0.1
2,568,290	-		CSW01_12025	0.84	-0.9
2,568,320	+		CSW01_12025	0.86	-0.3
2,568,328	-		CSW01_12025	0.87	-3.2
2,568,328	-		CSW01_12025	0.87	-1.4
2,568,330	+		CSW01_12025	0.87	+0.2
2,568,373	+		CSW01_12025	0.90	-0.6
2,568,396	-				+1.8
2,568,403	+				-0.0
2,568,403	+				+1.5
2,568,403	+				+0.4
2,568,411	-				+0.9
2,568,415	+				-0.3
2,568,444	-				-3.2
2,568,463	+				-3.3
2,568,482	-				+0.2
2,568,506	+				+0.3
2,568,514	-				+0.7
2,568,514	-				-1.7
2,568,514	-				-1.6
2,568,520	+				+1.6
2,568,520	+				+1.0
2,568,528	-				-4.4
2,568,528	-				+1.1
2,568,528	-				-3.8
2,568,549	+				-0.7
2,568,549	+				+0.8
2,568,565	+				-3.7
2,568,573	-				-2.3
2,568,606	-				-2.0
2,568,610	+				-0.6
2,568,618	-				-1.2
2,568,645	+				+0.9
2,568,645	+				+0.1
2,568,653	-				+0.1
2,568,653	-				+1.8
2,568,653	-				-1.2
2,568,653	-				+0.7
2,568,653	-				+0.6
2,568,660	-				-0.7
2,568,764	-				-0.2
2,568,988	+				+0.6
2,568,996	+				-2.4
2,568,996	-				-1.9
2,569,056	+				-0.9
2,569,056	+				-0.3
2,569,056	+				+1.4
2,569,127	-				+0.0
2,569,200	+				+0.7
2,569,207	-				+0.2
2,569,224	-				-3.9
2,569,232	+				+0.3
2,569,319	-				+1.2
2,569,346	-				-1.0
2,569,391	-				+0.6
2,569,410	+				-2.3
2,569,418	-				-2.4
2,569,452	-				+0.5
2,569,473	+				+0.2
2,569,518	-		CSW01_12030	0.10	-0.9