Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11455

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_11445 and CSW01_11450 are separated by 160 nucleotidesCSW01_11450 and CSW01_11455 are separated by 1 nucleotidesCSW01_11455 and CSW01_11460 are separated by 75 nucleotides CSW01_11445: CSW01_11445 - lipid-A-disaccharide synthase, at 2,433,292 to 2,434,431 _11445 CSW01_11450: CSW01_11450 - acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase, at 2,434,592 to 2,435,380 _11450 CSW01_11455: CSW01_11455 - beta-hydroxyacyl-ACP dehydratase, at 2,435,382 to 2,435,843 _11455 CSW01_11460: CSW01_11460 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 2,435,919 to 2,436,974 _11460 Position (kb) 2435 2436Strain fitness (log2 ratio) -2 -1 0 1at 2434.466 kb on + strandat 2434.467 kb on - strandat 2434.512 kb on + strandat 2434.520 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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2,434,466 + +0.2
2,434,467 - -1.1
2,434,512 + -2.4
2,434,520 - -2.0

Or see this region's nucleotide sequence