Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11430

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_11425 and CSW01_11430 are separated by 139 nucleotidesCSW01_11430 and CSW01_11435 are separated by 54 nucleotides CSW01_11425: CSW01_11425 - tRNA(Ile)-lysidine synthetase, at 2,426,653 to 2,427,975 _11425 CSW01_11430: CSW01_11430 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 2,428,115 to 2,429,074 _11430 CSW01_11435: CSW01_11435 - DNA polymerase III subunit alpha, at 2,429,129 to 2,432,608 _11435 Position (kb) 2428 2429 2430Strain fitness (log2 ratio) -1 0 1 2at 2427.994 kb on - strandat 2428.046 kb on + strandat 2428.047 kb on + strandat 2428.049 kb on - strandat 2428.049 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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2,427,994 - +2.0
2,428,046 + +0.9
2,428,047 + -1.1
2,428,049 - -0.6
2,428,049 - +0.3

Or see this region's nucleotide sequence