Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_06670 and CSW01_06675 are separated by 80 nucleotides CSW01_06675 and CSW01_06680 overlap by 22 nucleotides CSW01_06680 and CSW01_06685 are separated by 364 nucleotides CSW01_06685 and CSW01_06690 overlap by 55 nucleotides
CSW01_06670: CSW01_06670 - penicillin-binding protein, at 1,403,501 to 1,406,572
_06670
CSW01_06675: CSW01_06675 - (Na+)-NQR maturation NqrM, at 1,406,653 to 1,406,868
_06675
CSW01_06680: CSW01_06680 - dinitrogenase iron-molybdenum cofactor, at 1,406,847 to 1,407,329
_06680
CSW01_06685: CSW01_06685 - hypothetical protein, at 1,407,694 to 1,407,882
_06685
CSW01_06690: CSW01_06690 - galactose/glucose ABC transporter substrate-binding protein MglB, at 1,407,828 to 1,408,802
_06690
Position (kb) 1406
1407
1408 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1405.850 kb on + strand, within CSW01_06670 at 1405.858 kb on - strand, within CSW01_06670 at 1405.858 kb on - strand, within CSW01_06670 at 1405.858 kb on - strand, within CSW01_06670 at 1405.858 kb on - strand, within CSW01_06670 at 1405.962 kb on - strand, within CSW01_06670 at 1405.963 kb on - strand, within CSW01_06670 at 1406.005 kb on + strand, within CSW01_06670 at 1406.008 kb on - strand, within CSW01_06670 at 1406.214 kb on - strand, within CSW01_06670 at 1406.239 kb on + strand, within CSW01_06670 at 1406.249 kb on - strand, within CSW01_06670 at 1406.260 kb on + strand, within CSW01_06670 at 1406.459 kb on + strand at 1406.510 kb on + strand at 1406.562 kb on - strand at 1406.588 kb on + strand at 1406.714 kb on + strand, within CSW01_06675 at 1406.761 kb on + strand, within CSW01_06675 at 1406.774 kb on - strand, within CSW01_06675 at 1406.815 kb on + strand, within CSW01_06675 at 1406.861 kb on - strand at 1406.908 kb on - strand, within CSW01_06680 at 1406.960 kb on - strand, within CSW01_06680 at 1407.032 kb on - strand, within CSW01_06680 at 1407.066 kb on + strand, within CSW01_06680 at 1407.069 kb on - strand, within CSW01_06680 at 1407.237 kb on + strand, within CSW01_06680 at 1407.416 kb on + strand at 1407.502 kb on + strand at 1407.510 kb on - strand at 1407.510 kb on - strand at 1407.854 kb on + strand at 1407.854 kb on + strand at 1407.872 kb on - strand at 1407.872 kb on - strand at 1408.052 kb on - strand, within CSW01_06690 at 1408.097 kb on + strand, within CSW01_06690 at 1408.230 kb on - strand, within CSW01_06690 at 1408.268 kb on + strand, within CSW01_06690 at 1408.268 kb on + strand, within CSW01_06690 at 1408.268 kb on + strand, within CSW01_06690 at 1408.268 kb on + strand, within CSW01_06690 at 1408.268 kb on + strand, within CSW01_06690 at 1408.268 kb on + strand, within CSW01_06690 at 1408.276 kb on - strand, within CSW01_06690 at 1408.276 kb on - strand, within CSW01_06690
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 1,405,850 + CSW01_06670 0.76 -0.1 1,405,858 - CSW01_06670 0.77 -0.4 1,405,858 - CSW01_06670 0.77 -2.0 1,405,858 - CSW01_06670 0.77 +0.7 1,405,858 - CSW01_06670 0.77 +2.0 1,405,962 - CSW01_06670 0.80 +0.5 1,405,963 - CSW01_06670 0.80 +0.3 1,406,005 + CSW01_06670 0.82 -0.5 1,406,008 - CSW01_06670 0.82 +0.4 1,406,214 - CSW01_06670 0.88 -0.5 1,406,239 + CSW01_06670 0.89 -0.1 1,406,249 - CSW01_06670 0.89 +0.5 1,406,260 + CSW01_06670 0.90 -1.7 1,406,459 + -0.5 1,406,510 + -0.2 1,406,562 - -0.0 1,406,588 + -0.6 1,406,714 + CSW01_06675 0.28 -0.2 1,406,761 + CSW01_06675 0.50 +0.1 1,406,774 - CSW01_06675 0.56 +2.0 1,406,815 + CSW01_06675 0.75 +1.5 1,406,861 - -2.0 1,406,908 - CSW01_06680 0.13 +0.8 1,406,960 - CSW01_06680 0.23 -0.9 1,407,032 - CSW01_06680 0.38 -0.7 1,407,066 + CSW01_06680 0.45 -1.1 1,407,069 - CSW01_06680 0.46 +0.1 1,407,237 + CSW01_06680 0.81 -0.6 1,407,416 + +0.1 1,407,502 + -2.2 1,407,510 - +0.7 1,407,510 - -2.7 1,407,854 + -1.8 1,407,854 + +2.5 1,407,872 - -0.9 1,407,872 - +1.0 1,408,052 - CSW01_06690 0.23 -2.0 1,408,097 + CSW01_06690 0.28 -0.6 1,408,230 - CSW01_06690 0.41 +2.0 1,408,268 + CSW01_06690 0.45 +0.7 1,408,268 + CSW01_06690 0.45 +1.1 1,408,268 + CSW01_06690 0.45 +0.2 1,408,268 + CSW01_06690 0.45 +0.9 1,408,268 + CSW01_06690 0.45 -0.9 1,408,268 + CSW01_06690 0.45 +0.0 1,408,276 - CSW01_06690 0.46 -0.6 1,408,276 - CSW01_06690 0.46 +0.1
Or see this region's nucleotide sequence