Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06560

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_06555 and CSW01_06560 are separated by 397 nucleotidesCSW01_06560 and CSW01_06565 are separated by 88 nucleotides CSW01_06555: CSW01_06555 - methyl-accepting chemotaxis protein, at 1,376,289 to 1,377,920 _06555 CSW01_06560: CSW01_06560 - 6-carboxytetrahydropterin synthase QueD, at 1,378,318 to 1,378,686 _06560 CSW01_06565: CSW01_06565 - L-serine ammonia-lyase, at 1,378,775 to 1,380,136 _06565 Position (kb) 1378 1379Strain fitness (log2 ratio) -3 -2 -1 0 1at 1377.434 kb on + strand, within CSW01_06555at 1377.483 kb on - strand, within CSW01_06555at 1377.563 kb on + strand, within CSW01_06555at 1377.563 kb on + strand, within CSW01_06555at 1377.571 kb on - strand, within CSW01_06555at 1377.685 kb on - strand, within CSW01_06555at 1377.746 kb on - strand, within CSW01_06555at 1377.778 kb on + strandat 1377.879 kb on + strandat 1377.953 kb on + strandat 1378.038 kb on + strandat 1378.045 kb on + strandat 1378.230 kb on - strandat 1378.230 kb on - strandat 1378.323 kb on + strandat 1378.371 kb on - strand, within CSW01_06560at 1378.390 kb on + strand, within CSW01_06560at 1378.398 kb on + strand, within CSW01_06560at 1378.579 kb on + strand, within CSW01_06560at 1378.605 kb on + strand, within CSW01_06560at 1378.616 kb on + strand, within CSW01_06560at 1378.761 kb on + strandat 1378.906 kb on + strandat 1379.037 kb on + strand, within CSW01_06565at 1379.047 kb on + strand, within CSW01_06565at 1379.060 kb on - strand, within CSW01_06565at 1379.102 kb on - strand, within CSW01_06565at 1379.128 kb on + strand, within CSW01_06565at 1379.136 kb on + strand, within CSW01_06565at 1379.265 kb on - strand, within CSW01_06565at 1379.274 kb on + strand, within CSW01_06565at 1379.274 kb on + strand, within CSW01_06565at 1379.274 kb on + strand, within CSW01_06565at 1379.274 kb on + strand, within CSW01_06565at 1379.282 kb on - strand, within CSW01_06565at 1379.282 kb on - strand, within CSW01_06565at 1379.282 kb on - strand, within CSW01_06565at 1379.282 kb on - strand, within CSW01_06565at 1379.349 kb on - strand, within CSW01_06565at 1379.349 kb on - strand, within CSW01_06565at 1379.398 kb on - strand, within CSW01_06565at 1379.400 kb on + strand, within CSW01_06565at 1379.400 kb on + strand, within CSW01_06565at 1379.408 kb on - strand, within CSW01_06565at 1379.423 kb on + strand, within CSW01_06565at 1379.423 kb on + strand, within CSW01_06565at 1379.439 kb on + strand, within CSW01_06565at 1379.439 kb on + strand, within CSW01_06565at 1379.504 kb on - strand, within CSW01_06565at 1379.509 kb on + strand, within CSW01_06565at 1379.564 kb on - strand, within CSW01_06565at 1379.628 kb on + strand, within CSW01_06565at 1379.636 kb on - strand, within CSW01_06565

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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1,377,434 + CSW01_06555 0.70 -0.5
1,377,483 - CSW01_06555 0.73 +0.6
1,377,563 + CSW01_06555 0.78 -1.0
1,377,563 + CSW01_06555 0.78 +0.3
1,377,571 - CSW01_06555 0.79 +0.7
1,377,685 - CSW01_06555 0.86 +0.6
1,377,746 - CSW01_06555 0.89 +0.5
1,377,778 + +0.8
1,377,879 + +1.4
1,377,953 + +0.5
1,378,038 + -0.4
1,378,045 + +1.0
1,378,230 - +1.0
1,378,230 - +0.9
1,378,323 + +1.4
1,378,371 - CSW01_06560 0.14 -1.0
1,378,390 + CSW01_06560 0.20 +0.2
1,378,398 + CSW01_06560 0.22 -0.7
1,378,579 + CSW01_06560 0.71 +1.0
1,378,605 + CSW01_06560 0.78 +0.7
1,378,616 + CSW01_06560 0.81 -1.0
1,378,761 + -1.3
1,378,906 + -1.5
1,379,037 + CSW01_06565 0.19 -2.1
1,379,047 + CSW01_06565 0.20 -2.7
1,379,060 - CSW01_06565 0.21 -1.4
1,379,102 - CSW01_06565 0.24 -3.1
1,379,128 + CSW01_06565 0.26 +1.3
1,379,136 + CSW01_06565 0.27 +0.9
1,379,265 - CSW01_06565 0.36 -2.2
1,379,274 + CSW01_06565 0.37 -3.2
1,379,274 + CSW01_06565 0.37 -0.4
1,379,274 + CSW01_06565 0.37 +0.7
1,379,274 + CSW01_06565 0.37 -2.8
1,379,282 - CSW01_06565 0.37 -1.2
1,379,282 - CSW01_06565 0.37 +1.0
1,379,282 - CSW01_06565 0.37 +0.6
1,379,282 - CSW01_06565 0.37 -2.7
1,379,349 - CSW01_06565 0.42 +0.1
1,379,349 - CSW01_06565 0.42 +0.9
1,379,398 - CSW01_06565 0.46 -1.8
1,379,400 + CSW01_06565 0.46 -0.9
1,379,400 + CSW01_06565 0.46 +0.9
1,379,408 - CSW01_06565 0.46 +0.0
1,379,423 + CSW01_06565 0.48 -1.1
1,379,423 + CSW01_06565 0.48 +0.7
1,379,439 + CSW01_06565 0.49 +0.0
1,379,439 + CSW01_06565 0.49 -0.3
1,379,504 - CSW01_06565 0.54 +0.7
1,379,509 + CSW01_06565 0.54 -1.2
1,379,564 - CSW01_06565 0.58 -0.1
1,379,628 + CSW01_06565 0.63 -3.4
1,379,636 - CSW01_06565 0.63 -2.5

Or see this region's nucleotide sequence