Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04575

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04565 and CSW01_04570 are separated by 41 nucleotidesCSW01_04570 and CSW01_04575 are separated by 314 nucleotidesCSW01_04575 and CSW01_04580 are separated by 11 nucleotides CSW01_04565: CSW01_04565 - (2E,6E)-farnesyl diphosphate synthase, at 948,162 to 949,046 _04565 CSW01_04570: CSW01_04570 - exodeoxyribonuclease 7 small subunit, at 949,088 to 949,330 _04570 CSW01_04575: CSW01_04575 - flagellar motor protein PomA, at 949,645 to 950,409 _04575 CSW01_04580: CSW01_04580 - flagellar motor protein MotB, at 950,421 to 951,377 _04580 Position (kb) 949 950 951Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 949.101 kb on - strandat 949.165 kb on - strand, within CSW01_04570at 949.167 kb on - strand, within CSW01_04570at 949.167 kb on - strand, within CSW01_04570at 949.181 kb on - strand, within CSW01_04570at 949.191 kb on - strand, within CSW01_04570at 949.191 kb on - strand, within CSW01_04570at 949.196 kb on - strand, within CSW01_04570at 949.233 kb on - strand, within CSW01_04570at 949.430 kb on - strandat 949.479 kb on + strandat 949.488 kb on - strandat 949.503 kb on + strandat 949.503 kb on - strandat 949.548 kb on - strandat 949.713 kb on - strandat 949.713 kb on - strandat 949.799 kb on - strand, within CSW01_04575at 949.831 kb on + strand, within CSW01_04575at 949.837 kb on + strand, within CSW01_04575at 949.845 kb on + strand, within CSW01_04575at 949.845 kb on + strand, within CSW01_04575at 949.875 kb on - strand, within CSW01_04575at 949.951 kb on - strand, within CSW01_04575at 949.966 kb on + strand, within CSW01_04575at 949.980 kb on + strand, within CSW01_04575at 949.999 kb on + strand, within CSW01_04575at 950.007 kb on - strand, within CSW01_04575at 950.015 kb on - strand, within CSW01_04575at 950.040 kb on - strand, within CSW01_04575at 950.117 kb on - strand, within CSW01_04575at 950.121 kb on + strand, within CSW01_04575at 950.179 kb on - strand, within CSW01_04575at 950.193 kb on + strand, within CSW01_04575at 950.200 kb on + strand, within CSW01_04575at 950.200 kb on + strand, within CSW01_04575at 950.208 kb on - strand, within CSW01_04575at 950.333 kb on + strandat 950.333 kb on + strandat 950.333 kb on + strandat 950.333 kb on + strandat 950.334 kb on - strandat 950.341 kb on - strandat 950.341 kb on - strandat 950.341 kb on - strandat 950.341 kb on - strandat 950.341 kb on - strandat 950.341 kb on - strandat 950.507 kb on - strandat 950.507 kb on - strandat 950.668 kb on + strand, within CSW01_04580at 950.715 kb on - strand, within CSW01_04580at 950.744 kb on + strand, within CSW01_04580at 950.752 kb on - strand, within CSW01_04580at 950.779 kb on + strand, within CSW01_04580at 950.789 kb on + strand, within CSW01_04580at 950.789 kb on + strand, within CSW01_04580at 950.797 kb on - strand, within CSW01_04580at 950.797 kb on - strand, within CSW01_04580at 950.797 kb on - strand, within CSW01_04580at 950.808 kb on + strand, within CSW01_04580at 950.865 kb on + strand, within CSW01_04580at 950.875 kb on + strand, within CSW01_04580at 950.885 kb on + strand, within CSW01_04580at 950.893 kb on - strand, within CSW01_04580at 950.893 kb on - strand, within CSW01_04580at 950.921 kb on + strand, within CSW01_04580at 950.960 kb on - strand, within CSW01_04580at 951.013 kb on - strand, within CSW01_04580at 951.127 kb on + strand, within CSW01_04580at 951.135 kb on - strand, within CSW01_04580at 951.140 kb on - strand, within CSW01_04580at 951.140 kb on - strand, within CSW01_04580at 951.145 kb on - strand, within CSW01_04580at 951.165 kb on - strand, within CSW01_04580at 951.308 kb on + strandat 951.333 kb on + strandat 951.340 kb on + strandat 951.340 kb on - strandat 951.391 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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949,101 - +0.7
949,165 - CSW01_04570 0.32 +0.5
949,167 - CSW01_04570 0.33 +1.1
949,167 - CSW01_04570 0.33 -1.3
949,181 - CSW01_04570 0.38 -1.6
949,191 - CSW01_04570 0.42 -0.9
949,191 - CSW01_04570 0.42 -2.7
949,196 - CSW01_04570 0.44 +0.2
949,233 - CSW01_04570 0.60 -0.9
949,430 - -0.1
949,479 + -1.9
949,488 - -0.1
949,503 + +0.4
949,503 - +0.6
949,548 - -3.5
949,713 - -0.6
949,713 - -0.2
949,799 - CSW01_04575 0.20 +0.2
949,831 + CSW01_04575 0.24 -0.0
949,837 + CSW01_04575 0.25 -1.5
949,845 + CSW01_04575 0.26 -1.8
949,845 + CSW01_04575 0.26 -0.6
949,875 - CSW01_04575 0.30 +0.4
949,951 - CSW01_04575 0.40 +0.6
949,966 + CSW01_04575 0.42 -0.6
949,980 + CSW01_04575 0.44 -3.2
949,999 + CSW01_04575 0.46 -1.2
950,007 - CSW01_04575 0.47 +0.5
950,015 - CSW01_04575 0.48 -1.8
950,040 - CSW01_04575 0.52 -2.6
950,117 - CSW01_04575 0.62 -0.8
950,121 + CSW01_04575 0.62 -0.1
950,179 - CSW01_04575 0.70 -1.0
950,193 + CSW01_04575 0.72 -0.6
950,200 + CSW01_04575 0.73 +0.2
950,200 + CSW01_04575 0.73 +2.7
950,208 - CSW01_04575 0.74 -2.6
950,333 + -1.9
950,333 + -4.1
950,333 + -3.2
950,333 + -2.2
950,334 - -0.6
950,341 - -1.1
950,341 - -2.6
950,341 - +0.1
950,341 - -1.5
950,341 - +0.6
950,341 - -1.5
950,507 - -0.3
950,507 - -2.5
950,668 + CSW01_04580 0.26 -0.8
950,715 - CSW01_04580 0.31 +0.9
950,744 + CSW01_04580 0.34 -1.6
950,752 - CSW01_04580 0.35 +0.8
950,779 + CSW01_04580 0.37 -3.8
950,789 + CSW01_04580 0.38 -3.8
950,789 + CSW01_04580 0.38 -0.8
950,797 - CSW01_04580 0.39 +1.5
950,797 - CSW01_04580 0.39 +0.3
950,797 - CSW01_04580 0.39 -1.7
950,808 + CSW01_04580 0.40 -1.5
950,865 + CSW01_04580 0.46 -3.2
950,875 + CSW01_04580 0.47 -2.4
950,885 + CSW01_04580 0.48 +1.1
950,893 - CSW01_04580 0.49 -0.7
950,893 - CSW01_04580 0.49 -1.1
950,921 + CSW01_04580 0.52 -2.8
950,960 - CSW01_04580 0.56 -2.8
951,013 - CSW01_04580 0.62 +0.2
951,127 + CSW01_04580 0.74 +0.6
951,135 - CSW01_04580 0.75 -1.6
951,140 - CSW01_04580 0.75 -0.6
951,140 - CSW01_04580 0.75 +0.0
951,145 - CSW01_04580 0.76 -0.7
951,165 - CSW01_04580 0.78 -2.2
951,308 + -1.7
951,333 + -0.9
951,340 + -2.0
951,340 - +2.2
951,391 - -0.4

Or see this region's nucleotide sequence