Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04275

Experiment: ICP1_phage_23.5_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_04270 and CSW01_04275 overlap by 1 nucleotidesCSW01_04275 and CSW01_04280 are separated by 2 nucleotides CSW01_04270: CSW01_04270 - toxin coregulated pilus biosynthesis protein B, at 889,942 to 891,234 _04270 CSW01_04275: CSW01_04275 - toxin coregulated pilus biosynthesis protein Q, at 891,234 to 891,686 _04275 CSW01_04280: CSW01_04280 - toxin coregulated pilus biosynthesis outer membrane protein C, at 891,689 to 893,158 _04280 Position (kb) 891 892Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 890.235 kb on + strand, within CSW01_04270at 890.253 kb on - strand, within CSW01_04270at 890.253 kb on - strand, within CSW01_04270at 890.271 kb on + strand, within CSW01_04270at 890.279 kb on - strand, within CSW01_04270at 890.290 kb on + strand, within CSW01_04270at 890.290 kb on + strand, within CSW01_04270at 890.290 kb on + strand, within CSW01_04270at 890.298 kb on - strand, within CSW01_04270at 890.298 kb on - strand, within CSW01_04270at 890.305 kb on + strand, within CSW01_04270at 890.335 kb on - strand, within CSW01_04270at 890.342 kb on + strand, within CSW01_04270at 890.350 kb on - strand, within CSW01_04270at 890.404 kb on - strand, within CSW01_04270at 890.448 kb on - strand, within CSW01_04270at 890.457 kb on - strand, within CSW01_04270at 890.493 kb on - strand, within CSW01_04270at 890.499 kb on + strand, within CSW01_04270at 890.508 kb on + strand, within CSW01_04270at 890.550 kb on - strand, within CSW01_04270at 890.620 kb on + strand, within CSW01_04270at 890.620 kb on + strand, within CSW01_04270at 890.620 kb on + strand, within CSW01_04270at 890.628 kb on - strand, within CSW01_04270at 890.634 kb on + strand, within CSW01_04270at 890.651 kb on - strand, within CSW01_04270at 890.699 kb on + strand, within CSW01_04270at 890.699 kb on + strand, within CSW01_04270at 890.699 kb on + strand, within CSW01_04270at 890.709 kb on + strand, within CSW01_04270at 890.709 kb on + strand, within CSW01_04270at 890.712 kb on - strand, within CSW01_04270at 890.717 kb on - strand, within CSW01_04270at 890.717 kb on - strand, within CSW01_04270at 890.730 kb on - strand, within CSW01_04270at 890.732 kb on + strand, within CSW01_04270at 890.732 kb on + strand, within CSW01_04270at 890.732 kb on + strand, within CSW01_04270at 890.732 kb on + strand, within CSW01_04270at 890.732 kb on + strand, within CSW01_04270at 890.736 kb on - strand, within CSW01_04270at 890.740 kb on - strand, within CSW01_04270at 890.740 kb on - strand, within CSW01_04270at 890.747 kb on - strand, within CSW01_04270at 890.752 kb on + strand, within CSW01_04270at 890.752 kb on + strand, within CSW01_04270at 890.757 kb on + strand, within CSW01_04270at 890.765 kb on - strand, within CSW01_04270at 890.803 kb on + strand, within CSW01_04270at 890.803 kb on + strand, within CSW01_04270at 890.803 kb on + strand, within CSW01_04270at 890.803 kb on + strand, within CSW01_04270at 890.803 kb on + strand, within CSW01_04270at 890.803 kb on + strand, within CSW01_04270at 890.803 kb on + strand, within CSW01_04270at 890.803 kb on + strand, within CSW01_04270at 890.808 kb on + strand, within CSW01_04270at 890.811 kb on - strand, within CSW01_04270at 890.811 kb on - strand, within CSW01_04270at 890.811 kb on - strand, within CSW01_04270at 890.821 kb on - strand, within CSW01_04270at 890.898 kb on + strand, within CSW01_04270at 890.914 kb on - strand, within CSW01_04270at 890.922 kb on + strand, within CSW01_04270at 890.966 kb on - strand, within CSW01_04270at 890.975 kb on + strand, within CSW01_04270at 890.977 kb on + strand, within CSW01_04270at 890.985 kb on - strand, within CSW01_04270at 890.985 kb on - strand, within CSW01_04270at 890.988 kb on - strand, within CSW01_04270at 890.994 kb on + strand, within CSW01_04270at 891.008 kb on + strand, within CSW01_04270at 891.008 kb on + strand, within CSW01_04270at 891.008 kb on + strand, within CSW01_04270at 891.008 kb on + strand, within CSW01_04270at 891.008 kb on + strand, within CSW01_04270at 891.008 kb on + strand, within CSW01_04270at 891.039 kb on + strand, within CSW01_04270at 891.064 kb on + strand, within CSW01_04270at 891.072 kb on - strand, within CSW01_04270at 891.072 kb on - strand, within CSW01_04270at 891.079 kb on + strand, within CSW01_04270at 891.079 kb on + strand, within CSW01_04270at 891.079 kb on + strand, within CSW01_04270at 891.082 kb on - strand, within CSW01_04270at 891.082 kb on - strand, within CSW01_04270at 891.082 kb on - strand, within CSW01_04270at 891.087 kb on - strand, within CSW01_04270at 891.087 kb on - strand, within CSW01_04270at 891.105 kb on + strandat 891.113 kb on - strandat 891.113 kb on - strandat 891.119 kb on - strandat 891.121 kb on + strandat 891.121 kb on + strandat 891.145 kb on + strandat 891.175 kb on - strandat 891.189 kb on + strandat 891.189 kb on + strandat 891.255 kb on + strandat 891.255 kb on + strandat 891.280 kb on - strand, within CSW01_04275at 891.280 kb on - strand, within CSW01_04275at 891.280 kb on - strand, within CSW01_04275at 891.283 kb on + strand, within CSW01_04275at 891.290 kb on - strand, within CSW01_04275at 891.291 kb on - strand, within CSW01_04275at 891.297 kb on - strand, within CSW01_04275at 891.300 kb on + strand, within CSW01_04275at 891.311 kb on + strand, within CSW01_04275at 891.311 kb on - strand, within CSW01_04275at 891.311 kb on - strand, within CSW01_04275at 891.316 kb on + strand, within CSW01_04275at 891.318 kb on + strand, within CSW01_04275at 891.321 kb on - strand, within CSW01_04275at 891.321 kb on - strand, within CSW01_04275at 891.328 kb on + strand, within CSW01_04275at 891.328 kb on + strand, within CSW01_04275at 891.328 kb on + strand, within CSW01_04275at 891.328 kb on + strand, within CSW01_04275at 891.328 kb on + strand, within CSW01_04275at 891.328 kb on + strand, within CSW01_04275at 891.328 kb on + strand, within CSW01_04275at 891.330 kb on + strand, within CSW01_04275at 891.335 kb on + strand, within CSW01_04275at 891.336 kb on - strand, within CSW01_04275at 891.336 kb on - strand, within CSW01_04275at 891.336 kb on - strand, within CSW01_04275at 891.336 kb on - strand, within CSW01_04275at 891.338 kb on + strand, within CSW01_04275at 891.338 kb on + strand, within CSW01_04275at 891.338 kb on + strand, within CSW01_04275at 891.338 kb on + strand, within CSW01_04275at 891.338 kb on + strand, within CSW01_04275at 891.338 kb on + strand, within CSW01_04275at 891.346 kb on - strand, within CSW01_04275at 891.346 kb on - strand, within CSW01_04275at 891.346 kb on - strand, within CSW01_04275at 891.346 kb on - strand, within CSW01_04275at 891.346 kb on - strand, within CSW01_04275at 891.346 kb on - strand, within CSW01_04275at 891.400 kb on + strand, within CSW01_04275at 891.408 kb on - strand, within CSW01_04275at 891.420 kb on + strand, within CSW01_04275at 891.430 kb on + strand, within CSW01_04275at 891.430 kb on + strand, within CSW01_04275at 891.430 kb on + strand, within CSW01_04275at 891.438 kb on - strand, within CSW01_04275at 891.460 kb on - strand, within CSW01_04275at 891.461 kb on - strand, within CSW01_04275at 891.467 kb on - strand, within CSW01_04275at 891.498 kb on + strand, within CSW01_04275at 891.506 kb on + strand, within CSW01_04275at 891.506 kb on + strand, within CSW01_04275at 891.506 kb on + strand, within CSW01_04275at 891.506 kb on + strand, within CSW01_04275at 891.506 kb on - strand, within CSW01_04275at 891.508 kb on + strand, within CSW01_04275at 891.508 kb on + strand, within CSW01_04275at 891.514 kb on - strand, within CSW01_04275at 891.514 kb on - strand, within CSW01_04275at 891.531 kb on - strand, within CSW01_04275at 891.535 kb on + strand, within CSW01_04275at 891.607 kb on - strand, within CSW01_04275at 891.668 kb on + strandat 891.668 kb on + strandat 891.676 kb on - strandat 891.713 kb on + strandat 891.738 kb on + strandat 891.772 kb on - strandat 891.783 kb on + strandat 891.785 kb on - strandat 891.850 kb on + strand, within CSW01_04280at 891.858 kb on - strand, within CSW01_04280at 891.882 kb on + strand, within CSW01_04280at 891.882 kb on + strand, within CSW01_04280at 891.883 kb on + strand, within CSW01_04280at 891.883 kb on + strand, within CSW01_04280at 891.890 kb on - strand, within CSW01_04280at 891.897 kb on - strand, within CSW01_04280at 891.902 kb on - strand, within CSW01_04280at 891.934 kb on - strand, within CSW01_04280at 891.967 kb on + strand, within CSW01_04280at 892.047 kb on - strand, within CSW01_04280at 892.049 kb on - strand, within CSW01_04280at 892.128 kb on - strand, within CSW01_04280at 892.215 kb on + strand, within CSW01_04280at 892.220 kb on + strand, within CSW01_04280at 892.220 kb on + strand, within CSW01_04280at 892.220 kb on + strand, within CSW01_04280at 892.228 kb on - strand, within CSW01_04280at 892.228 kb on - strand, within CSW01_04280at 892.229 kb on + strand, within CSW01_04280at 892.233 kb on + strand, within CSW01_04280at 892.244 kb on + strand, within CSW01_04280at 892.245 kb on + strand, within CSW01_04280at 892.253 kb on - strand, within CSW01_04280at 892.254 kb on + strand, within CSW01_04280at 892.254 kb on + strand, within CSW01_04280at 892.261 kb on - strand, within CSW01_04280at 892.262 kb on - strand, within CSW01_04280at 892.263 kb on + strand, within CSW01_04280at 892.263 kb on + strand, within CSW01_04280at 892.271 kb on - strand, within CSW01_04280at 892.283 kb on - strand, within CSW01_04280at 892.285 kb on + strand, within CSW01_04280at 892.293 kb on - strand, within CSW01_04280at 892.472 kb on - strand, within CSW01_04280at 892.472 kb on - strand, within CSW01_04280at 892.475 kb on + strand, within CSW01_04280at 892.543 kb on - strand, within CSW01_04280at 892.545 kb on + strand, within CSW01_04280at 892.589 kb on - strand, within CSW01_04280at 892.589 kb on - strand, within CSW01_04280at 892.595 kb on + strand, within CSW01_04280at 892.597 kb on - strand, within CSW01_04280at 892.603 kb on - strand, within CSW01_04280at 892.605 kb on + strand, within CSW01_04280at 892.613 kb on + strand, within CSW01_04280at 892.629 kb on + strand, within CSW01_04280at 892.629 kb on + strand, within CSW01_04280at 892.629 kb on + strand, within CSW01_04280at 892.642 kb on + strand, within CSW01_04280at 892.642 kb on + strand, within CSW01_04280at 892.651 kb on - strand, within CSW01_04280at 892.673 kb on - strand, within CSW01_04280

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
remove
890,235 + CSW01_04270 0.23 -0.1
890,253 - CSW01_04270 0.24 +0.1
890,253 - CSW01_04270 0.24 -2.2
890,271 + CSW01_04270 0.25 +0.1
890,279 - CSW01_04270 0.26 +0.8
890,290 + CSW01_04270 0.27 +0.2
890,290 + CSW01_04270 0.27 -1.9
890,290 + CSW01_04270 0.27 +0.0
890,298 - CSW01_04270 0.28 -1.0
890,298 - CSW01_04270 0.28 -1.5
890,305 + CSW01_04270 0.28 -3.2
890,335 - CSW01_04270 0.30 +0.8
890,342 + CSW01_04270 0.31 -1.4
890,350 - CSW01_04270 0.32 +0.3
890,404 - CSW01_04270 0.36 -2.9
890,448 - CSW01_04270 0.39 +0.4
890,457 - CSW01_04270 0.40 +0.7
890,493 - CSW01_04270 0.43 -0.6
890,499 + CSW01_04270 0.43 +0.6
890,508 + CSW01_04270 0.44 -0.3
890,550 - CSW01_04270 0.47 +2.3
890,620 + CSW01_04270 0.52 +0.1
890,620 + CSW01_04270 0.52 +0.9
890,620 + CSW01_04270 0.52 +0.4
890,628 - CSW01_04270 0.53 +1.5
890,634 + CSW01_04270 0.54 +0.3
890,651 - CSW01_04270 0.55 +0.3
890,699 + CSW01_04270 0.59 -3.7
890,699 + CSW01_04270 0.59 -1.5
890,699 + CSW01_04270 0.59 +1.4
890,709 + CSW01_04270 0.59 -2.4
890,709 + CSW01_04270 0.59 +0.7
890,712 - CSW01_04270 0.60 -1.1
890,717 - CSW01_04270 0.60 -1.7
890,717 - CSW01_04270 0.60 -1.6
890,730 - CSW01_04270 0.61 +0.5
890,732 + CSW01_04270 0.61 -2.8
890,732 + CSW01_04270 0.61 +0.8
890,732 + CSW01_04270 0.61 +0.2
890,732 + CSW01_04270 0.61 -1.7
890,732 + CSW01_04270 0.61 -0.8
890,736 - CSW01_04270 0.61 -1.2
890,740 - CSW01_04270 0.62 +0.1
890,740 - CSW01_04270 0.62 -0.3
890,747 - CSW01_04270 0.62 -3.0
890,752 + CSW01_04270 0.63 -0.3
890,752 + CSW01_04270 0.63 +1.3
890,757 + CSW01_04270 0.63 +0.6
890,765 - CSW01_04270 0.64 -0.9
890,803 + CSW01_04270 0.67 -0.4
890,803 + CSW01_04270 0.67 +0.9
890,803 + CSW01_04270 0.67 -0.4
890,803 + CSW01_04270 0.67 +0.4
890,803 + CSW01_04270 0.67 -1.6
890,803 + CSW01_04270 0.67 +1.5
890,803 + CSW01_04270 0.67 -0.5
890,803 + CSW01_04270 0.67 -0.7
890,808 + CSW01_04270 0.67 +0.1
890,811 - CSW01_04270 0.67 +0.8
890,811 - CSW01_04270 0.67 -0.2
890,811 - CSW01_04270 0.67 -3.3
890,821 - CSW01_04270 0.68 +0.4
890,898 + CSW01_04270 0.74 -0.9
890,914 - CSW01_04270 0.75 +0.9
890,922 + CSW01_04270 0.76 -2.0
890,966 - CSW01_04270 0.79 -2.1
890,975 + CSW01_04270 0.80 -2.2
890,977 + CSW01_04270 0.80 -0.2
890,985 - CSW01_04270 0.81 -2.4
890,985 - CSW01_04270 0.81 -2.6
890,988 - CSW01_04270 0.81 +0.8
890,994 + CSW01_04270 0.81 -1.5
891,008 + CSW01_04270 0.82 -1.3
891,008 + CSW01_04270 0.82 -0.5
891,008 + CSW01_04270 0.82 -0.6
891,008 + CSW01_04270 0.82 -3.1
891,008 + CSW01_04270 0.82 +0.7
891,008 + CSW01_04270 0.82 +2.0
891,039 + CSW01_04270 0.85 +1.0
891,064 + CSW01_04270 0.87 -0.9
891,072 - CSW01_04270 0.87 +0.2
891,072 - CSW01_04270 0.87 -2.0
891,079 + CSW01_04270 0.88 -1.1
891,079 + CSW01_04270 0.88 +0.6
891,079 + CSW01_04270 0.88 +1.7
891,082 - CSW01_04270 0.88 -2.1
891,082 - CSW01_04270 0.88 -1.3
891,082 - CSW01_04270 0.88 +0.2
891,087 - CSW01_04270 0.89 +0.3
891,087 - CSW01_04270 0.89 +0.2
891,105 + +0.4
891,113 - +0.6
891,113 - +0.6
891,119 - -2.9
891,121 + +1.5
891,121 + +0.7
891,145 + +0.7
891,175 - -0.9
891,189 + +0.6
891,189 + -0.3
891,255 + +0.8
891,255 + +2.2
891,280 - CSW01_04275 0.10 +0.9
891,280 - CSW01_04275 0.10 -1.5
891,280 - CSW01_04275 0.10 -0.5
891,283 + CSW01_04275 0.11 -1.1
891,290 - CSW01_04275 0.12 -3.2
891,291 - CSW01_04275 0.13 +1.2
891,297 - CSW01_04275 0.14 +1.6
891,300 + CSW01_04275 0.15 +1.3
891,311 + CSW01_04275 0.17 +0.6
891,311 - CSW01_04275 0.17 -1.6
891,311 - CSW01_04275 0.17 +0.4
891,316 + CSW01_04275 0.18 -1.8
891,318 + CSW01_04275 0.19 -1.3
891,321 - CSW01_04275 0.19 +0.7
891,321 - CSW01_04275 0.19 +0.6
891,328 + CSW01_04275 0.21 -2.4
891,328 + CSW01_04275 0.21 +0.3
891,328 + CSW01_04275 0.21 -0.4
891,328 + CSW01_04275 0.21 -0.4
891,328 + CSW01_04275 0.21 -0.6
891,328 + CSW01_04275 0.21 +0.4
891,328 + CSW01_04275 0.21 +0.7
891,330 + CSW01_04275 0.21 -0.8
891,335 + CSW01_04275 0.22 -1.5
891,336 - CSW01_04275 0.23 +0.7
891,336 - CSW01_04275 0.23 -1.6
891,336 - CSW01_04275 0.23 -0.0
891,336 - CSW01_04275 0.23 -2.6
891,338 + CSW01_04275 0.23 +0.3
891,338 + CSW01_04275 0.23 -1.0
891,338 + CSW01_04275 0.23 +0.8
891,338 + CSW01_04275 0.23 -2.8
891,338 + CSW01_04275 0.23 -0.8
891,338 + CSW01_04275 0.23 -1.6
891,346 - CSW01_04275 0.25 -0.9
891,346 - CSW01_04275 0.25 +0.1
891,346 - CSW01_04275 0.25 -1.6
891,346 - CSW01_04275 0.25 -1.2
891,346 - CSW01_04275 0.25 -0.0
891,346 - CSW01_04275 0.25 -2.4
891,400 + CSW01_04275 0.37 -1.6
891,408 - CSW01_04275 0.38 +1.2
891,420 + CSW01_04275 0.41 +0.9
891,430 + CSW01_04275 0.43 +0.0
891,430 + CSW01_04275 0.43 +0.2
891,430 + CSW01_04275 0.43 -0.0
891,438 - CSW01_04275 0.45 -0.9
891,460 - CSW01_04275 0.50 -0.2
891,461 - CSW01_04275 0.50 -1.4
891,467 - CSW01_04275 0.51 -0.2
891,498 + CSW01_04275 0.58 -2.9
891,506 + CSW01_04275 0.60 +1.1
891,506 + CSW01_04275 0.60 -2.6
891,506 + CSW01_04275 0.60 -2.3
891,506 + CSW01_04275 0.60 -1.2
891,506 - CSW01_04275 0.60 -0.9
891,508 + CSW01_04275 0.60 +0.2
891,508 + CSW01_04275 0.60 -1.1
891,514 - CSW01_04275 0.62 -2.2
891,514 - CSW01_04275 0.62 +1.0
891,531 - CSW01_04275 0.66 -0.2
891,535 + CSW01_04275 0.66 +1.9
891,607 - CSW01_04275 0.82 +0.6
891,668 + +0.1
891,668 + +0.7
891,676 - +2.0
891,713 + -2.8
891,738 + +0.5
891,772 - -1.5
891,783 + -0.8
891,785 - -0.3
891,850 + CSW01_04280 0.11 -0.7
891,858 - CSW01_04280 0.11 -1.4
891,882 + CSW01_04280 0.13 +1.3
891,882 + CSW01_04280 0.13 -0.3
891,883 + CSW01_04280 0.13 +0.9
891,883 + CSW01_04280 0.13 +0.3
891,890 - CSW01_04280 0.14 -0.8
891,897 - CSW01_04280 0.14 +0.1
891,902 - CSW01_04280 0.14 -2.0
891,934 - CSW01_04280 0.17 -1.0
891,967 + CSW01_04280 0.19 +0.1
892,047 - CSW01_04280 0.24 -1.9
892,049 - CSW01_04280 0.24 -2.6
892,128 - CSW01_04280 0.30 -0.3
892,215 + CSW01_04280 0.36 +1.7
892,220 + CSW01_04280 0.36 -0.8
892,220 + CSW01_04280 0.36 -0.4
892,220 + CSW01_04280 0.36 -1.5
892,228 - CSW01_04280 0.37 +0.4
892,228 - CSW01_04280 0.37 +1.7
892,229 + CSW01_04280 0.37 +1.2
892,233 + CSW01_04280 0.37 +0.5
892,244 + CSW01_04280 0.38 -1.2
892,245 + CSW01_04280 0.38 -1.8
892,253 - CSW01_04280 0.38 +0.4
892,254 + CSW01_04280 0.38 +0.6
892,254 + CSW01_04280 0.38 +0.8
892,261 - CSW01_04280 0.39 +0.4
892,262 - CSW01_04280 0.39 +1.0
892,263 + CSW01_04280 0.39 -0.1
892,263 + CSW01_04280 0.39 +1.0
892,271 - CSW01_04280 0.40 -2.5
892,283 - CSW01_04280 0.40 +0.6
892,285 + CSW01_04280 0.41 +0.9
892,293 - CSW01_04280 0.41 -1.9
892,472 - CSW01_04280 0.53 -0.1
892,472 - CSW01_04280 0.53 -0.9
892,475 + CSW01_04280 0.53 -0.6
892,543 - CSW01_04280 0.58 -2.0
892,545 + CSW01_04280 0.58 -0.3
892,589 - CSW01_04280 0.61 -0.3
892,589 - CSW01_04280 0.61 -2.5
892,595 + CSW01_04280 0.62 -1.0
892,597 - CSW01_04280 0.62 +1.2
892,603 - CSW01_04280 0.62 -0.2
892,605 + CSW01_04280 0.62 +0.4
892,613 + CSW01_04280 0.63 -2.6
892,629 + CSW01_04280 0.64 +0.6
892,629 + CSW01_04280 0.64 -0.3
892,629 + CSW01_04280 0.64 +0.0
892,642 + CSW01_04280 0.65 +0.5
892,642 + CSW01_04280 0.65 +0.0
892,651 - CSW01_04280 0.65 -2.4
892,673 - CSW01_04280 0.67 +0.7

Or see this region's nucleotide sequence