Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04215

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04205 and CSW01_04210 are separated by 111 nucleotidesCSW01_04210 and CSW01_04215 are separated by 301 nucleotidesCSW01_04215 and CSW01_04220 are separated by 25 nucleotides CSW01_04205: CSW01_04205 - type II toxin-antitoxin system HipA family toxin, at 870,020 to 871,390 _04205 CSW01_04210: CSW01_04210 - hypothetical protein, at 871,502 to 871,684 _04210 CSW01_04215: CSW01_04215 - IS481 family transposase ISVch1, at 871,986 to 872,963 _04215 CSW01_04220: CSW01_04220 - hypothetical protein, at 872,989 to 873,669 _04220 Position (kb) 871 872 873Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 870.991 kb on - strand, within CSW01_04205at 871.023 kb on - strand, within CSW01_04205at 871.083 kb on + strand, within CSW01_04205at 871.083 kb on + strand, within CSW01_04205at 871.091 kb on - strand, within CSW01_04205at 871.108 kb on + strand, within CSW01_04205at 871.141 kb on + strand, within CSW01_04205at 871.149 kb on - strand, within CSW01_04205at 871.149 kb on - strand, within CSW01_04205at 871.149 kb on - strand, within CSW01_04205at 871.149 kb on - strand, within CSW01_04205at 871.173 kb on + strand, within CSW01_04205at 871.232 kb on - strand, within CSW01_04205at 871.269 kb on + strandat 871.316 kb on + strandat 871.347 kb on + strandat 871.391 kb on - strandat 871.536 kb on + strand, within CSW01_04210at 871.544 kb on - strand, within CSW01_04210at 871.554 kb on + strand, within CSW01_04210at 871.572 kb on + strand, within CSW01_04210at 871.580 kb on + strand, within CSW01_04210at 871.619 kb on + strand, within CSW01_04210at 871.664 kb on + strand, within CSW01_04210at 871.717 kb on + strandat 871.717 kb on + strandat 871.717 kb on + strandat 871.725 kb on - strandat 871.725 kb on - strandat 871.915 kb on + strandat 871.923 kb on - strandat 871.936 kb on + strandat 871.936 kb on + strandat 871.936 kb on + strandat 871.944 kb on - strandat 872.007 kb on + strandat 872.015 kb on - strandat 872.015 kb on - strandat 872.015 kb on - strandat 872.016 kb on - strandat 872.107 kb on + strand, within CSW01_04215at 872.130 kb on + strand, within CSW01_04215at 872.138 kb on - strand, within CSW01_04215at 872.138 kb on - strand, within CSW01_04215at 872.196 kb on + strand, within CSW01_04215at 872.253 kb on + strand, within CSW01_04215at 872.280 kb on - strand, within CSW01_04215at 872.289 kb on + strand, within CSW01_04215at 872.293 kb on - strand, within CSW01_04215at 872.312 kb on - strand, within CSW01_04215at 872.373 kb on - strand, within CSW01_04215at 872.394 kb on + strand, within CSW01_04215at 872.408 kb on + strand, within CSW01_04215at 872.435 kb on + strand, within CSW01_04215at 872.435 kb on + strand, within CSW01_04215at 872.443 kb on - strand, within CSW01_04215at 872.443 kb on - strand, within CSW01_04215at 872.469 kb on + strand, within CSW01_04215at 872.485 kb on - strand, within CSW01_04215at 872.485 kb on - strand, within CSW01_04215at 872.485 kb on - strand, within CSW01_04215at 872.568 kb on + strand, within CSW01_04215at 872.728 kb on + strand, within CSW01_04215at 872.874 kb on + strandat 872.929 kb on + strandat 873.013 kb on - strandat 873.024 kb on + strandat 873.053 kb on + strandat 873.066 kb on - strand, within CSW01_04220at 873.070 kb on - strand, within CSW01_04220at 873.142 kb on - strand, within CSW01_04220at 873.191 kb on + strand, within CSW01_04220at 873.199 kb on - strand, within CSW01_04220at 873.199 kb on - strand, within CSW01_04220at 873.236 kb on + strand, within CSW01_04220at 873.236 kb on + strand, within CSW01_04220at 873.244 kb on - strand, within CSW01_04220at 873.303 kb on - strand, within CSW01_04220at 873.327 kb on + strand, within CSW01_04220at 873.335 kb on + strand, within CSW01_04220at 873.335 kb on - strand, within CSW01_04220at 873.335 kb on - strand, within CSW01_04220at 873.383 kb on - strand, within CSW01_04220at 873.391 kb on + strand, within CSW01_04220at 873.391 kb on + strand, within CSW01_04220at 873.391 kb on + strand, within CSW01_04220at 873.391 kb on + strand, within CSW01_04220at 873.399 kb on - strand, within CSW01_04220at 873.399 kb on - strand, within CSW01_04220at 873.399 kb on - strand, within CSW01_04220at 873.408 kb on + strand, within CSW01_04220at 873.408 kb on + strand, within CSW01_04220at 873.409 kb on - strand, within CSW01_04220at 873.410 kb on + strand, within CSW01_04220at 873.416 kb on - strand, within CSW01_04220at 873.448 kb on + strand, within CSW01_04220at 873.449 kb on - strand, within CSW01_04220at 873.449 kb on - strand, within CSW01_04220at 873.458 kb on + strand, within CSW01_04220at 873.458 kb on + strand, within CSW01_04220at 873.458 kb on + strand, within CSW01_04220at 873.466 kb on - strand, within CSW01_04220at 873.473 kb on + strand, within CSW01_04220at 873.530 kb on + strand, within CSW01_04220at 873.530 kb on + strand, within CSW01_04220at 873.538 kb on - strand, within CSW01_04220at 873.538 kb on - strand, within CSW01_04220at 873.538 kb on - strand, within CSW01_04220at 873.538 kb on - strand, within CSW01_04220at 873.547 kb on - strand, within CSW01_04220at 873.567 kb on + strand, within CSW01_04220at 873.570 kb on - strand, within CSW01_04220at 873.575 kb on - strand, within CSW01_04220at 873.611 kb on - strandat 873.613 kb on + strandat 873.618 kb on + strandat 873.621 kb on - strandat 873.621 kb on - strandat 873.621 kb on - strandat 873.621 kb on - strandat 873.623 kb on + strandat 873.623 kb on + strandat 873.628 kb on - strandat 873.631 kb on - strandat 873.631 kb on - strandat 873.631 kb on - strandat 873.655 kb on - strandat 873.655 kb on - strandat 873.671 kb on + strandat 873.671 kb on + strandat 873.671 kb on + strandat 873.679 kb on - strandat 873.698 kb on + strandat 873.703 kb on + strandat 873.703 kb on + strandat 873.703 kb on + strandat 873.703 kb on + strandat 873.711 kb on - strandat 873.711 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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870,991 - CSW01_04205 0.71 -1.0
871,023 - CSW01_04205 0.73 -0.3
871,083 + CSW01_04205 0.78 -4.2
871,083 + CSW01_04205 0.78 -3.5
871,091 - CSW01_04205 0.78 -1.3
871,108 + CSW01_04205 0.79 +0.1
871,141 + CSW01_04205 0.82 +1.2
871,149 - CSW01_04205 0.82 -3.9
871,149 - CSW01_04205 0.82 -0.8
871,149 - CSW01_04205 0.82 +1.2
871,149 - CSW01_04205 0.82 +0.6
871,173 + CSW01_04205 0.84 +0.6
871,232 - CSW01_04205 0.88 -3.8
871,269 + -1.5
871,316 + +0.1
871,347 + -0.7
871,391 - +0.7
871,536 + CSW01_04210 0.19 +1.6
871,544 - CSW01_04210 0.23 -2.9
871,554 + CSW01_04210 0.28 -4.2
871,572 + CSW01_04210 0.38 +0.1
871,580 + CSW01_04210 0.43 -0.6
871,619 + CSW01_04210 0.64 +0.7
871,664 + CSW01_04210 0.89 +0.1
871,717 + -0.9
871,717 + -0.1
871,717 + +0.7
871,725 - -0.4
871,725 - -0.4
871,915 + +1.0
871,923 - +1.2
871,936 + +0.5
871,936 + +0.3
871,936 + +0.9
871,944 - +1.3
872,007 + -1.5
872,015 - +0.9
872,015 - -0.2
872,015 - +0.3
872,016 - +0.8
872,107 + CSW01_04215 0.12 +0.3
872,130 + CSW01_04215 0.15 -2.6
872,138 - CSW01_04215 0.16 +0.2
872,138 - CSW01_04215 0.16 -1.7
872,196 + CSW01_04215 0.21 -2.6
872,253 + CSW01_04215 0.27 +0.2
872,280 - CSW01_04215 0.30 +1.1
872,289 + CSW01_04215 0.31 -0.6
872,293 - CSW01_04215 0.31 -1.6
872,312 - CSW01_04215 0.33 +0.8
872,373 - CSW01_04215 0.40 +1.1
872,394 + CSW01_04215 0.42 -0.6
872,408 + CSW01_04215 0.43 -0.7
872,435 + CSW01_04215 0.46 +1.6
872,435 + CSW01_04215 0.46 +0.7
872,443 - CSW01_04215 0.47 -0.2
872,443 - CSW01_04215 0.47 +1.0
872,469 + CSW01_04215 0.49 -3.0
872,485 - CSW01_04215 0.51 -2.9
872,485 - CSW01_04215 0.51 -1.9
872,485 - CSW01_04215 0.51 -1.3
872,568 + CSW01_04215 0.60 -0.8
872,728 + CSW01_04215 0.76 -0.7
872,874 + -1.2
872,929 + +0.5
873,013 - +0.6
873,024 + -0.7
873,053 + -1.7
873,066 - CSW01_04220 0.11 -3.7
873,070 - CSW01_04220 0.12 -0.5
873,142 - CSW01_04220 0.22 -2.1
873,191 + CSW01_04220 0.30 -0.0
873,199 - CSW01_04220 0.31 -0.4
873,199 - CSW01_04220 0.31 -0.8
873,236 + CSW01_04220 0.36 +1.7
873,236 + CSW01_04220 0.36 -2.8
873,244 - CSW01_04220 0.37 -1.1
873,303 - CSW01_04220 0.46 +0.1
873,327 + CSW01_04220 0.50 -0.4
873,335 + CSW01_04220 0.51 -3.0
873,335 - CSW01_04220 0.51 +0.1
873,335 - CSW01_04220 0.51 -0.8
873,383 - CSW01_04220 0.58 -0.1
873,391 + CSW01_04220 0.59 +0.7
873,391 + CSW01_04220 0.59 -0.5
873,391 + CSW01_04220 0.59 -0.3
873,391 + CSW01_04220 0.59 -2.1
873,399 - CSW01_04220 0.60 +0.0
873,399 - CSW01_04220 0.60 -4.2
873,399 - CSW01_04220 0.60 +0.1
873,408 + CSW01_04220 0.62 +0.2
873,408 + CSW01_04220 0.62 +1.0
873,409 - CSW01_04220 0.62 +0.5
873,410 + CSW01_04220 0.62 -2.7
873,416 - CSW01_04220 0.63 +0.3
873,448 + CSW01_04220 0.67 -2.7
873,449 - CSW01_04220 0.68 -1.4
873,449 - CSW01_04220 0.68 -4.1
873,458 + CSW01_04220 0.69 +0.1
873,458 + CSW01_04220 0.69 -1.0
873,458 + CSW01_04220 0.69 +0.9
873,466 - CSW01_04220 0.70 -1.2
873,473 + CSW01_04220 0.71 -2.0
873,530 + CSW01_04220 0.79 +0.5
873,530 + CSW01_04220 0.79 -0.3
873,538 - CSW01_04220 0.81 +0.3
873,538 - CSW01_04220 0.81 +1.4
873,538 - CSW01_04220 0.81 -0.6
873,538 - CSW01_04220 0.81 +0.2
873,547 - CSW01_04220 0.82 +0.3
873,567 + CSW01_04220 0.85 +0.4
873,570 - CSW01_04220 0.85 -0.4
873,575 - CSW01_04220 0.86 +0.5
873,611 - +1.7
873,613 + +1.8
873,618 + -1.2
873,621 - -3.0
873,621 - +1.0
873,621 - -0.2
873,621 - +0.3
873,623 + +0.9
873,623 + -3.2
873,628 - -1.2
873,631 - +0.7
873,631 - -1.0
873,631 - -2.8
873,655 - +2.0
873,655 - -1.1
873,671 + +1.4
873,671 + -3.0
873,671 + -0.1
873,679 - +0.7
873,698 + +1.2
873,703 + +1.5
873,703 + +1.3
873,703 + +0.8
873,703 + +0.7
873,711 - +0.1
873,711 - +1.3

Or see this region's nucleotide sequence