Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03965 and CSW01_03970 are separated by 304 nucleotides CSW01_03970 and CSW01_03975 overlap by 20 nucleotides
CSW01_03965: CSW01_03965 - alanyl-tRNA editing protein, at 815,781 to 816,698
_03965
CSW01_03970: CSW01_03970 - DNA ligase, at 817,003 to 817,236
_03970
CSW01_03975: CSW01_03975 - exodeoxyribonuclease VII large subunit, at 817,217 to 818,557
_03975
Position (kb) 817
818 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 816.003 kb on - strand, within CSW01_03965 at 816.050 kb on - strand, within CSW01_03965 at 816.132 kb on + strand, within CSW01_03965 at 816.240 kb on - strand, within CSW01_03965 at 816.274 kb on + strand, within CSW01_03965 at 816.294 kb on - strand, within CSW01_03965 at 816.299 kb on + strand, within CSW01_03965 at 816.387 kb on - strand, within CSW01_03965 at 816.472 kb on + strand, within CSW01_03965 at 816.477 kb on + strand, within CSW01_03965 at 816.477 kb on + strand, within CSW01_03965 at 816.477 kb on + strand, within CSW01_03965 at 816.477 kb on + strand, within CSW01_03965 at 816.485 kb on - strand, within CSW01_03965 at 816.485 kb on - strand, within CSW01_03965 at 816.510 kb on + strand, within CSW01_03965 at 816.511 kb on + strand, within CSW01_03965 at 816.518 kb on - strand, within CSW01_03965 at 816.593 kb on + strand, within CSW01_03965 at 816.601 kb on - strand, within CSW01_03965 at 816.884 kb on - strand at 816.929 kb on - strand at 816.929 kb on - strand at 816.945 kb on + strand at 816.998 kb on + strand at 817.006 kb on - strand at 817.006 kb on - strand at 817.048 kb on + strand, within CSW01_03970 at 817.048 kb on + strand, within CSW01_03970 at 817.048 kb on + strand, within CSW01_03970 at 817.048 kb on + strand, within CSW01_03970 at 817.048 kb on + strand, within CSW01_03970 at 817.056 kb on - strand, within CSW01_03970 at 817.056 kb on - strand, within CSW01_03970 at 817.056 kb on - strand, within CSW01_03970 at 817.056 kb on - strand, within CSW01_03970 at 817.083 kb on - strand, within CSW01_03970 at 817.115 kb on - strand, within CSW01_03970 at 817.128 kb on + strand, within CSW01_03970 at 817.134 kb on + strand, within CSW01_03970 at 817.134 kb on + strand, within CSW01_03970 at 817.134 kb on + strand, within CSW01_03970 at 817.136 kb on - strand, within CSW01_03970 at 817.236 kb on - strand at 817.327 kb on - strand at 817.346 kb on + strand at 817.573 kb on + strand, within CSW01_03975 at 817.671 kb on - strand, within CSW01_03975 at 817.756 kb on + strand, within CSW01_03975 at 817.769 kb on + strand, within CSW01_03975 at 817.789 kb on + strand, within CSW01_03975 at 817.844 kb on + strand, within CSW01_03975 at 817.976 kb on - strand, within CSW01_03975 at 817.985 kb on + strand, within CSW01_03975 at 818.022 kb on + strand, within CSW01_03975 at 818.045 kb on - strand, within CSW01_03975 at 818.101 kb on - strand, within CSW01_03975 at 818.125 kb on + strand, within CSW01_03975
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 816,003 - CSW01_03965 0.24 -0.7 816,050 - CSW01_03965 0.29 +3.0 816,132 + CSW01_03965 0.38 +0.1 816,240 - CSW01_03965 0.50 +1.1 816,274 + CSW01_03965 0.54 +1.9 816,294 - CSW01_03965 0.56 +0.5 816,299 + CSW01_03965 0.56 -1.2 816,387 - CSW01_03965 0.66 +1.5 816,472 + CSW01_03965 0.75 +1.5 816,477 + CSW01_03965 0.76 +1.4 816,477 + CSW01_03965 0.76 +1.0 816,477 + CSW01_03965 0.76 +2.0 816,477 + CSW01_03965 0.76 +1.3 816,485 - CSW01_03965 0.77 +1.6 816,485 - CSW01_03965 0.77 -0.7 816,510 + CSW01_03965 0.79 -0.1 816,511 + CSW01_03965 0.80 +1.8 816,518 - CSW01_03965 0.80 +0.2 816,593 + CSW01_03965 0.88 +0.2 816,601 - CSW01_03965 0.89 +0.2 816,884 - -3.0 816,929 - -2.3 816,929 - -0.7 816,945 + +0.9 816,998 + +0.8 817,006 - +1.1 817,006 - -0.3 817,048 + CSW01_03970 0.19 +1.4 817,048 + CSW01_03970 0.19 +0.0 817,048 + CSW01_03970 0.19 -0.8 817,048 + CSW01_03970 0.19 +0.4 817,048 + CSW01_03970 0.19 +0.3 817,056 - CSW01_03970 0.23 +0.5 817,056 - CSW01_03970 0.23 -3.3 817,056 - CSW01_03970 0.23 -3.2 817,056 - CSW01_03970 0.23 +0.5 817,083 - CSW01_03970 0.34 +2.3 817,115 - CSW01_03970 0.48 -1.8 817,128 + CSW01_03970 0.53 +1.2 817,134 + CSW01_03970 0.56 -3.5 817,134 + CSW01_03970 0.56 -1.6 817,134 + CSW01_03970 0.56 +0.4 817,136 - CSW01_03970 0.57 +0.3 817,236 - -1.5 817,327 - -1.8 817,346 + +0.3 817,573 + CSW01_03975 0.27 +2.3 817,671 - CSW01_03975 0.34 -1.2 817,756 + CSW01_03975 0.40 +1.6 817,769 + CSW01_03975 0.41 -0.4 817,789 + CSW01_03975 0.43 -2.9 817,844 + CSW01_03975 0.47 -2.4 817,976 - CSW01_03975 0.57 +0.3 817,985 + CSW01_03975 0.57 -1.1 818,022 + CSW01_03975 0.60 +0.2 818,045 - CSW01_03975 0.62 -0.7 818,101 - CSW01_03975 0.66 +0.2 818,125 + CSW01_03975 0.68 +2.4
Or see this region's nucleotide sequence