Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03855

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03850 and CSW01_03855 are separated by 104 nucleotidesCSW01_03855 and CSW01_03860 are separated by 21 nucleotides CSW01_03850: CSW01_03850 - tRNA guanosine(34) transglycosylase Tgt, at 792,987 to 794,126 _03850 CSW01_03855: CSW01_03855 - preprotein translocase subunit YajC, at 794,231 to 794,563 _03855 CSW01_03860: CSW01_03860 - protein translocase subunit SecD, at 794,585 to 796,438 _03860 Position (kb) 794 795Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 793.243 kb on + strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.256 kb on - strand, within CSW01_03850at 793.275 kb on - strand, within CSW01_03850at 793.295 kb on - strand, within CSW01_03850at 793.422 kb on - strand, within CSW01_03850at 793.423 kb on + strand, within CSW01_03850at 793.424 kb on + strand, within CSW01_03850at 793.432 kb on - strand, within CSW01_03850at 793.432 kb on - strand, within CSW01_03850at 793.510 kb on - strand, within CSW01_03850at 793.626 kb on - strand, within CSW01_03850at 793.633 kb on + strand, within CSW01_03850at 793.633 kb on + strand, within CSW01_03850at 793.641 kb on - strand, within CSW01_03850at 793.641 kb on - strand, within CSW01_03850at 793.641 kb on - strand, within CSW01_03850at 793.667 kb on - strand, within CSW01_03850at 793.677 kb on + strand, within CSW01_03850at 793.687 kb on + strand, within CSW01_03850at 793.695 kb on - strand, within CSW01_03850at 793.695 kb on - strand, within CSW01_03850at 793.695 kb on - strand, within CSW01_03850at 793.737 kb on + strand, within CSW01_03850at 793.748 kb on + strand, within CSW01_03850at 793.909 kb on - strand, within CSW01_03850at 793.969 kb on + strand, within CSW01_03850at 793.995 kb on - strand, within CSW01_03850at 794.050 kb on + strandat 794.138 kb on + strandat 794.138 kb on + strandat 794.196 kb on + strandat 794.338 kb on + strand, within CSW01_03855at 794.353 kb on + strand, within CSW01_03855at 794.405 kb on + strand, within CSW01_03855at 794.411 kb on + strand, within CSW01_03855at 794.411 kb on + strand, within CSW01_03855at 794.419 kb on - strand, within CSW01_03855at 794.419 kb on - strand, within CSW01_03855at 794.419 kb on - strand, within CSW01_03855at 794.426 kb on + strand, within CSW01_03855at 794.437 kb on - strand, within CSW01_03855at 794.458 kb on + strand, within CSW01_03855at 794.536 kb on + strandat 794.536 kb on + strandat 794.585 kb on + strandat 794.587 kb on + strandat 794.593 kb on + strandat 794.593 kb on - strandat 794.593 kb on - strandat 794.595 kb on - strandat 794.639 kb on + strandat 794.686 kb on - strandat 794.712 kb on + strandat 794.763 kb on - strandat 794.872 kb on - strand, within CSW01_03860at 794.955 kb on + strand, within CSW01_03860at 794.955 kb on + strand, within CSW01_03860at 794.963 kb on - strand, within CSW01_03860at 794.972 kb on + strand, within CSW01_03860at 795.048 kb on + strand, within CSW01_03860at 795.053 kb on + strand, within CSW01_03860at 795.134 kb on - strand, within CSW01_03860at 795.134 kb on - strand, within CSW01_03860at 795.184 kb on - strand, within CSW01_03860at 795.184 kb on - strand, within CSW01_03860at 795.280 kb on - strand, within CSW01_03860at 795.301 kb on + strand, within CSW01_03860at 795.313 kb on + strand, within CSW01_03860at 795.313 kb on + strand, within CSW01_03860at 795.317 kb on - strand, within CSW01_03860at 795.367 kb on + strand, within CSW01_03860at 795.377 kb on + strand, within CSW01_03860at 795.377 kb on + strand, within CSW01_03860at 795.530 kb on - strand, within CSW01_03860at 795.530 kb on - strand, within CSW01_03860at 795.556 kb on - strand, within CSW01_03860

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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793,243 + CSW01_03850 0.22 -0.9
793,243 + CSW01_03850 0.22 -1.2
793,243 + CSW01_03850 0.22 -1.6
793,243 + CSW01_03850 0.22 +0.1
793,243 + CSW01_03850 0.22 -1.3
793,251 - CSW01_03850 0.23 -1.5
793,251 - CSW01_03850 0.23 -1.0
793,251 - CSW01_03850 0.23 -1.2
793,251 - CSW01_03850 0.23 -2.2
793,251 - CSW01_03850 0.23 -3.6
793,251 - CSW01_03850 0.23 -2.4
793,251 - CSW01_03850 0.23 +0.0
793,251 - CSW01_03850 0.23 +0.4
793,251 - CSW01_03850 0.23 -1.4
793,256 - CSW01_03850 0.24 -0.6
793,275 - CSW01_03850 0.25 -1.0
793,295 - CSW01_03850 0.27 +1.6
793,422 - CSW01_03850 0.38 -1.5
793,423 + CSW01_03850 0.38 -2.9
793,424 + CSW01_03850 0.38 -1.9
793,432 - CSW01_03850 0.39 -0.7
793,432 - CSW01_03850 0.39 -2.6
793,510 - CSW01_03850 0.46 -2.6
793,626 - CSW01_03850 0.56 -1.7
793,633 + CSW01_03850 0.57 +0.2
793,633 + CSW01_03850 0.57 +0.9
793,641 - CSW01_03850 0.57 +1.3
793,641 - CSW01_03850 0.57 +0.3
793,641 - CSW01_03850 0.57 -2.3
793,667 - CSW01_03850 0.60 -2.5
793,677 + CSW01_03850 0.61 -0.7
793,687 + CSW01_03850 0.61 -1.1
793,695 - CSW01_03850 0.62 +0.3
793,695 - CSW01_03850 0.62 -0.8
793,695 - CSW01_03850 0.62 -2.2
793,737 + CSW01_03850 0.66 -1.8
793,748 + CSW01_03850 0.67 +0.5
793,909 - CSW01_03850 0.81 -1.0
793,969 + CSW01_03850 0.86 +0.6
793,995 - CSW01_03850 0.88 -2.8
794,050 + +0.3
794,138 + -0.3
794,138 + -2.6
794,196 + +0.4
794,338 + CSW01_03855 0.32 -1.6
794,353 + CSW01_03855 0.37 -1.9
794,405 + CSW01_03855 0.52 -2.9
794,411 + CSW01_03855 0.54 -0.6
794,411 + CSW01_03855 0.54 -0.6
794,419 - CSW01_03855 0.56 -0.0
794,419 - CSW01_03855 0.56 -0.9
794,419 - CSW01_03855 0.56 -0.2
794,426 + CSW01_03855 0.59 -3.3
794,437 - CSW01_03855 0.62 -2.6
794,458 + CSW01_03855 0.68 -0.1
794,536 + +0.0
794,536 + -0.7
794,585 + -2.7
794,587 + +0.1
794,593 + +2.1
794,593 - -0.4
794,593 - -2.1
794,595 - -0.0
794,639 + -3.9
794,686 - +1.5
794,712 + +0.6
794,763 - +0.7
794,872 - CSW01_03860 0.15 -0.5
794,955 + CSW01_03860 0.20 +0.6
794,955 + CSW01_03860 0.20 +0.8
794,963 - CSW01_03860 0.20 -0.9
794,972 + CSW01_03860 0.21 +0.9
795,048 + CSW01_03860 0.25 +0.9
795,053 + CSW01_03860 0.25 +0.5
795,134 - CSW01_03860 0.30 +0.9
795,134 - CSW01_03860 0.30 +0.4
795,184 - CSW01_03860 0.32 +0.5
795,184 - CSW01_03860 0.32 +0.5
795,280 - CSW01_03860 0.37 -0.3
795,301 + CSW01_03860 0.39 +0.1
795,313 + CSW01_03860 0.39 +0.5
795,313 + CSW01_03860 0.39 -2.4
795,317 - CSW01_03860 0.39 +0.2
795,367 + CSW01_03860 0.42 +1.2
795,377 + CSW01_03860 0.43 -1.9
795,377 + CSW01_03860 0.43 +1.0
795,530 - CSW01_03860 0.51 +0.9
795,530 - CSW01_03860 0.51 +1.0
795,556 - CSW01_03860 0.52 -3.9

Or see this region's nucleotide sequence