Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03785

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03780 and CSW01_03785 are separated by 198 nucleotidesCSW01_03785 and CSW01_03790 are separated by 9 nucleotides CSW01_03780: CSW01_03780 - polyphosphate kinase 1, at 775,550 to 777,655 _03780 CSW01_03785: CSW01_03785 - phosphate ABC transporter permease, at 777,854 to 780,049 _03785 CSW01_03790: CSW01_03790 - phosphate ABC transporter, permease protein PstA, at 780,059 to 781,705 _03790 Position (kb) 777 778 779 780 781Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 776.861 kb on + strand, within CSW01_03780at 776.866 kb on + strand, within CSW01_03780at 776.869 kb on - strand, within CSW01_03780at 776.871 kb on - strand, within CSW01_03780at 776.871 kb on - strand, within CSW01_03780at 776.899 kb on + strand, within CSW01_03780at 776.899 kb on + strand, within CSW01_03780at 776.899 kb on + strand, within CSW01_03780at 776.899 kb on + strand, within CSW01_03780at 776.899 kb on + strand, within CSW01_03780at 776.899 kb on + strand, within CSW01_03780at 776.899 kb on + strand, within CSW01_03780at 776.907 kb on - strand, within CSW01_03780at 776.907 kb on - strand, within CSW01_03780at 776.907 kb on - strand, within CSW01_03780at 776.907 kb on - strand, within CSW01_03780at 776.907 kb on - strand, within CSW01_03780at 776.907 kb on - strand, within CSW01_03780at 776.933 kb on + strand, within CSW01_03780at 776.933 kb on + strand, within CSW01_03780at 776.938 kb on - strand, within CSW01_03780at 776.941 kb on - strand, within CSW01_03780at 776.998 kb on + strand, within CSW01_03780at 776.998 kb on - strand, within CSW01_03780at 777.006 kb on - strand, within CSW01_03780at 777.018 kb on - strand, within CSW01_03780at 777.072 kb on - strand, within CSW01_03780at 777.102 kb on - strand, within CSW01_03780at 777.165 kb on + strand, within CSW01_03780at 777.194 kb on - strand, within CSW01_03780at 777.219 kb on + strand, within CSW01_03780at 777.238 kb on + strand, within CSW01_03780at 777.238 kb on + strand, within CSW01_03780at 777.241 kb on + strand, within CSW01_03780at 777.246 kb on - strand, within CSW01_03780at 777.246 kb on - strand, within CSW01_03780at 777.254 kb on - strand, within CSW01_03780at 777.256 kb on - strand, within CSW01_03780at 777.420 kb on + strand, within CSW01_03780at 777.428 kb on - strand, within CSW01_03780at 777.431 kb on - strand, within CSW01_03780at 777.457 kb on + strandat 777.556 kb on + strandat 777.601 kb on + strandat 777.601 kb on + strandat 777.601 kb on + strandat 777.609 kb on - strandat 777.609 kb on - strandat 777.609 kb on - strandat 777.609 kb on - strandat 777.609 kb on - strandat 777.633 kb on + strandat 777.641 kb on - strandat 777.641 kb on - strandat 777.741 kb on + strandat 777.742 kb on + strandat 777.748 kb on + strandat 777.749 kb on - strandat 777.769 kb on - strandat 777.828 kb on + strandat 777.828 kb on + strandat 777.931 kb on + strandat 778.185 kb on + strand, within CSW01_03785at 778.193 kb on + strand, within CSW01_03785at 778.339 kb on - strand, within CSW01_03785at 778.545 kb on + strand, within CSW01_03785at 778.825 kb on + strand, within CSW01_03785at 779.312 kb on + strand, within CSW01_03785at 779.443 kb on + strand, within CSW01_03785at 779.477 kb on + strand, within CSW01_03785at 779.506 kb on + strand, within CSW01_03785at 779.593 kb on - strand, within CSW01_03785at 779.812 kb on + strand, within CSW01_03785at 779.836 kb on + strandat 779.901 kb on + strandat 780.248 kb on + strand, within CSW01_03790at 780.312 kb on + strand, within CSW01_03790at 780.658 kb on + strand, within CSW01_03790

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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776,861 + CSW01_03780 0.62 -0.4
776,866 + CSW01_03780 0.62 +0.4
776,869 - CSW01_03780 0.63 -0.4
776,871 - CSW01_03780 0.63 +0.6
776,871 - CSW01_03780 0.63 -1.0
776,899 + CSW01_03780 0.64 +0.8
776,899 + CSW01_03780 0.64 +1.6
776,899 + CSW01_03780 0.64 +1.8
776,899 + CSW01_03780 0.64 +0.0
776,899 + CSW01_03780 0.64 +0.2
776,899 + CSW01_03780 0.64 -0.4
776,899 + CSW01_03780 0.64 +0.5
776,907 - CSW01_03780 0.64 +0.7
776,907 - CSW01_03780 0.64 -3.0
776,907 - CSW01_03780 0.64 +0.4
776,907 - CSW01_03780 0.64 +0.0
776,907 - CSW01_03780 0.64 +0.6
776,907 - CSW01_03780 0.64 +1.0
776,933 + CSW01_03780 0.66 -0.3
776,933 + CSW01_03780 0.66 +0.1
776,938 - CSW01_03780 0.66 +0.1
776,941 - CSW01_03780 0.66 +0.6
776,998 + CSW01_03780 0.69 -0.0
776,998 - CSW01_03780 0.69 -0.2
777,006 - CSW01_03780 0.69 -0.0
777,018 - CSW01_03780 0.70 -0.6
777,072 - CSW01_03780 0.72 +1.5
777,102 - CSW01_03780 0.74 -0.2
777,165 + CSW01_03780 0.77 +2.2
777,194 - CSW01_03780 0.78 +0.4
777,219 + CSW01_03780 0.79 +0.3
777,238 + CSW01_03780 0.80 -0.4
777,238 + CSW01_03780 0.80 -2.9
777,241 + CSW01_03780 0.80 -2.9
777,246 - CSW01_03780 0.81 -0.9
777,246 - CSW01_03780 0.81 -2.3
777,254 - CSW01_03780 0.81 -0.0
777,256 - CSW01_03780 0.81 -2.5
777,420 + CSW01_03780 0.89 +0.8
777,428 - CSW01_03780 0.89 +0.5
777,431 - CSW01_03780 0.89 -0.9
777,457 + -0.0
777,556 + -1.2
777,601 + +0.6
777,601 + +1.1
777,601 + -0.5
777,609 - +1.1
777,609 - -2.4
777,609 - -1.5
777,609 - -3.6
777,609 - +0.7
777,633 + +0.4
777,641 - -0.8
777,641 - +0.2
777,741 + -2.3
777,742 + +0.5
777,748 + -0.3
777,749 - -0.2
777,769 - -2.9
777,828 + +0.1
777,828 + -1.8
777,931 + -0.7
778,185 + CSW01_03785 0.15 -0.3
778,193 + CSW01_03785 0.15 -3.6
778,339 - CSW01_03785 0.22 -1.7
778,545 + CSW01_03785 0.31 +0.0
778,825 + CSW01_03785 0.44 -2.7
779,312 + CSW01_03785 0.66 -2.3
779,443 + CSW01_03785 0.72 -1.5
779,477 + CSW01_03785 0.74 -2.0
779,506 + CSW01_03785 0.75 +0.9
779,593 - CSW01_03785 0.79 -1.3
779,812 + CSW01_03785 0.89 -3.1
779,836 + -3.4
779,901 + +0.0
780,248 + CSW01_03790 0.11 +0.4
780,312 + CSW01_03790 0.15 +0.8
780,658 + CSW01_03790 0.36 -2.5

Or see this region's nucleotide sequence