Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03580 and CSW01_03585 are separated by 162 nucleotides CSW01_03585 and CSW01_03590 are separated by 46 nucleotides CSW01_03590 and CSW01_03595 are separated by 136 nucleotides
CSW01_03580: CSW01_03580 - lipoprotein signal peptidase, at 730,296 to 730,811
_03580
CSW01_03585: CSW01_03585 - peptidylprolyl isomerase, at 730,974 to 731,408
_03585
CSW01_03590: CSW01_03590 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 731,455 to 732,405
_03590
CSW01_03595: CSW01_03595 - carbon starvation protein A, at 732,542 to 734,026
_03595
Position (kb) 731
732
733 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 730.821 kb on - strand at 730.826 kb on - strand at 730.826 kb on - strand at 730.994 kb on - strand at 730.996 kb on - strand at 731.048 kb on - strand, within CSW01_03585 at 731.048 kb on - strand, within CSW01_03585 at 731.194 kb on + strand, within CSW01_03585 at 731.202 kb on - strand, within CSW01_03585 at 731.354 kb on + strand, within CSW01_03585 at 731.362 kb on - strand, within CSW01_03585 at 731.364 kb on + strand, within CSW01_03585 at 731.364 kb on + strand, within CSW01_03585 at 731.377 kb on + strand at 731.393 kb on - strand at 731.453 kb on - strand at 732.568 kb on - strand at 732.596 kb on + strand at 732.604 kb on - strand at 732.626 kb on + strand at 732.626 kb on + strand at 732.633 kb on + strand at 732.639 kb on + strand at 732.701 kb on + strand, within CSW01_03595 at 732.704 kb on + strand, within CSW01_03595 at 732.717 kb on - strand, within CSW01_03595 at 732.727 kb on - strand, within CSW01_03595 at 732.727 kb on - strand, within CSW01_03595 at 732.732 kb on + strand, within CSW01_03595 at 732.732 kb on + strand, within CSW01_03595 at 732.732 kb on + strand, within CSW01_03595 at 732.732 kb on + strand, within CSW01_03595 at 732.732 kb on + strand, within CSW01_03595 at 732.740 kb on - strand, within CSW01_03595 at 732.740 kb on - strand, within CSW01_03595 at 732.740 kb on - strand, within CSW01_03595 at 732.740 kb on - strand, within CSW01_03595 at 732.740 kb on - strand, within CSW01_03595 at 732.753 kb on + strand, within CSW01_03595 at 732.756 kb on - strand, within CSW01_03595 at 732.875 kb on + strand, within CSW01_03595 at 732.875 kb on + strand, within CSW01_03595 at 732.875 kb on + strand, within CSW01_03595 at 732.875 kb on + strand, within CSW01_03595 at 732.880 kb on + strand, within CSW01_03595 at 732.880 kb on + strand, within CSW01_03595 at 732.883 kb on + strand, within CSW01_03595 at 732.888 kb on - strand, within CSW01_03595 at 732.888 kb on - strand, within CSW01_03595 at 732.909 kb on + strand, within CSW01_03595 at 732.931 kb on + strand, within CSW01_03595 at 732.953 kb on - strand, within CSW01_03595 at 733.118 kb on - strand, within CSW01_03595 at 733.147 kb on + strand, within CSW01_03595 at 733.163 kb on - strand, within CSW01_03595 at 733.166 kb on - strand, within CSW01_03595 at 733.176 kb on - strand, within CSW01_03595 at 733.296 kb on + strand, within CSW01_03595 at 733.304 kb on - strand, within CSW01_03595 at 733.368 kb on - strand, within CSW01_03595 at 733.375 kb on + strand, within CSW01_03595 at 733.392 kb on - strand, within CSW01_03595
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 730,821 - -0.2 730,826 - -3.3 730,826 - +1.8 730,994 - -0.5 730,996 - -1.9 731,048 - CSW01_03585 0.17 +0.7 731,048 - CSW01_03585 0.17 -2.5 731,194 + CSW01_03585 0.51 -1.2 731,202 - CSW01_03585 0.52 +0.2 731,354 + CSW01_03585 0.87 +2.0 731,362 - CSW01_03585 0.89 +0.7 731,364 + CSW01_03585 0.90 -2.1 731,364 + CSW01_03585 0.90 +2.1 731,377 + +0.4 731,393 - -0.0 731,453 - +1.2 732,568 - +1.2 732,596 + -1.9 732,604 - -2.3 732,626 + +1.4 732,626 + +0.3 732,633 + +0.5 732,639 + -3.8 732,701 + CSW01_03595 0.11 +0.3 732,704 + CSW01_03595 0.11 -2.6 732,717 - CSW01_03595 0.12 -1.9 732,727 - CSW01_03595 0.12 -4.1 732,727 - CSW01_03595 0.12 -2.0 732,732 + CSW01_03595 0.13 +2.1 732,732 + CSW01_03595 0.13 +3.0 732,732 + CSW01_03595 0.13 +0.1 732,732 + CSW01_03595 0.13 +0.3 732,732 + CSW01_03595 0.13 +0.2 732,740 - CSW01_03595 0.13 +0.1 732,740 - CSW01_03595 0.13 -3.2 732,740 - CSW01_03595 0.13 -3.1 732,740 - CSW01_03595 0.13 -0.7 732,740 - CSW01_03595 0.13 -0.4 732,753 + CSW01_03595 0.14 +0.5 732,756 - CSW01_03595 0.14 +0.9 732,875 + CSW01_03595 0.22 +1.3 732,875 + CSW01_03595 0.22 -2.8 732,875 + CSW01_03595 0.22 -1.3 732,875 + CSW01_03595 0.22 +1.3 732,880 + CSW01_03595 0.23 +1.1 732,880 + CSW01_03595 0.23 +1.7 732,883 + CSW01_03595 0.23 -1.4 732,888 - CSW01_03595 0.23 +1.2 732,888 - CSW01_03595 0.23 +0.0 732,909 + CSW01_03595 0.25 -2.1 732,931 + CSW01_03595 0.26 -0.3 732,953 - CSW01_03595 0.28 -3.9 733,118 - CSW01_03595 0.39 +1.1 733,147 + CSW01_03595 0.41 -3.3 733,163 - CSW01_03595 0.42 -3.5 733,166 - CSW01_03595 0.42 +0.6 733,176 - CSW01_03595 0.43 +0.4 733,296 + CSW01_03595 0.51 -3.3 733,304 - CSW01_03595 0.51 +0.6 733,368 - CSW01_03595 0.56 +0.3 733,375 + CSW01_03595 0.56 -1.9 733,392 - CSW01_03595 0.57 -1.0
Or see this region's nucleotide sequence