Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03525 and CSW01_03530 are separated by 9 nucleotides CSW01_03530 and CSW01_03535 are separated by 28 nucleotides CSW01_03535 and CSW01_03540 are separated by 9 nucleotides CSW01_03540 and CSW01_03545 are separated by 92 nucleotides
CSW01_03525: CSW01_03525 - phosphoenolpyruvate-protein phosphotransferase PtsP, at 716,408 to 718,654
_03525
CSW01_03530: CSW01_03530 - sulfite exporter TauE/SafE family protein, at 718,664 to 719,458
_03530
CSW01_03535: CSW01_03535 - prolipoprotein diacylglyceryl transferase, at 719,487 to 720,302
_03535
CSW01_03540: CSW01_03540 - thymidylate synthase, at 720,312 to 721,163
_03540
CSW01_03545: CSW01_03545 - Na/Pi cotransporter family protein, at 721,256 to 722,404
_03545
Position (kb) 719
720
721 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 718.518 kb on + strand at 718.518 kb on + strand at 718.518 kb on + strand at 718.526 kb on - strand at 718.526 kb on - strand at 718.533 kb on + strand at 718.555 kb on + strand at 718.569 kb on - strand at 718.628 kb on - strand at 718.683 kb on - strand at 718.701 kb on + strand at 718.754 kb on - strand, within CSW01_03530 at 718.763 kb on + strand, within CSW01_03530 at 718.780 kb on + strand, within CSW01_03530 at 718.825 kb on + strand, within CSW01_03530 at 718.862 kb on - strand, within CSW01_03530 at 718.868 kb on + strand, within CSW01_03530 at 718.878 kb on + strand, within CSW01_03530 at 718.885 kb on + strand, within CSW01_03530 at 718.886 kb on - strand, within CSW01_03530 at 718.946 kb on + strand, within CSW01_03530 at 719.005 kb on - strand, within CSW01_03530 at 719.012 kb on - strand, within CSW01_03530 at 719.017 kb on + strand, within CSW01_03530 at 719.017 kb on + strand, within CSW01_03530 at 719.017 kb on + strand, within CSW01_03530 at 719.019 kb on + strand, within CSW01_03530 at 719.025 kb on - strand, within CSW01_03530 at 719.030 kb on + strand, within CSW01_03530 at 719.032 kb on + strand, within CSW01_03530 at 719.083 kb on + strand, within CSW01_03530 at 719.084 kb on - strand, within CSW01_03530 at 719.116 kb on + strand, within CSW01_03530 at 719.133 kb on + strand, within CSW01_03530 at 719.265 kb on + strand, within CSW01_03530 at 719.281 kb on - strand, within CSW01_03530 at 719.281 kb on - strand, within CSW01_03530 at 719.281 kb on - strand, within CSW01_03530 at 719.293 kb on - strand, within CSW01_03530 at 719.391 kb on + strand at 719.452 kb on - strand at 721.191 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 718,518 + +0.7 718,518 + +1.4 718,518 + +0.4 718,526 - -0.9 718,526 - +0.7 718,533 + +1.0 718,555 + +0.7 718,569 - -1.6 718,628 - -0.1 718,683 - +1.0 718,701 + -0.2 718,754 - CSW01_03530 0.11 -3.0 718,763 + CSW01_03530 0.12 +0.6 718,780 + CSW01_03530 0.15 +0.0 718,825 + CSW01_03530 0.20 -1.5 718,862 - CSW01_03530 0.25 +1.9 718,868 + CSW01_03530 0.26 +0.8 718,878 + CSW01_03530 0.27 -3.9 718,885 + CSW01_03530 0.28 +1.1 718,886 - CSW01_03530 0.28 +1.2 718,946 + CSW01_03530 0.35 -1.7 719,005 - CSW01_03530 0.43 -2.8 719,012 - CSW01_03530 0.44 +1.5 719,017 + CSW01_03530 0.44 +1.8 719,017 + CSW01_03530 0.44 -2.3 719,017 + CSW01_03530 0.44 -0.2 719,019 + CSW01_03530 0.45 -3.3 719,025 - CSW01_03530 0.45 -2.3 719,030 + CSW01_03530 0.46 -2.0 719,032 + CSW01_03530 0.46 -2.0 719,083 + CSW01_03530 0.53 +1.1 719,084 - CSW01_03530 0.53 +0.1 719,116 + CSW01_03530 0.57 -2.6 719,133 + CSW01_03530 0.59 +1.3 719,265 + CSW01_03530 0.76 -0.7 719,281 - CSW01_03530 0.78 -0.1 719,281 - CSW01_03530 0.78 +0.7 719,281 - CSW01_03530 0.78 -1.5 719,293 - CSW01_03530 0.79 +0.4 719,391 + +1.0 719,452 - -0.5 721,191 - -3.7
Or see this region's nucleotide sequence