Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03440

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03435 and CSW01_03440 are separated by 107 nucleotidesCSW01_03440 and CSW01_03445 are separated by 232 nucleotidesCSW01_03445 and CSW01_03450 overlap by 65 nucleotides CSW01_03435: CSW01_03435 - protease, at 694,978 to 695,991 _03435 CSW01_03440: CSW01_03440 - bifunctional diguanylate cyclase/phosphodiesterase, at 696,099 to 698,153 _03440 CSW01_03445: CSW01_03445 - SCP2 domain-containing protein, at 698,386 to 698,913 _03445 CSW01_03450: CSW01_03450 - N-acetyltransferase, at 698,849 to 699,400 _03450 Position (kb) 696 697 698 699Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 695.136 kb on + strand, within CSW01_03435at 695.139 kb on - strand, within CSW01_03435at 695.201 kb on - strand, within CSW01_03435at 695.205 kb on + strand, within CSW01_03435at 695.269 kb on - strand, within CSW01_03435at 695.293 kb on - strand, within CSW01_03435at 695.295 kb on + strand, within CSW01_03435at 695.295 kb on + strand, within CSW01_03435at 695.295 kb on + strand, within CSW01_03435at 695.295 kb on + strand, within CSW01_03435at 695.295 kb on + strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.413 kb on - strand, within CSW01_03435at 695.420 kb on + strand, within CSW01_03435at 695.626 kb on - strand, within CSW01_03435at 695.648 kb on + strand, within CSW01_03435at 695.656 kb on - strand, within CSW01_03435at 695.664 kb on + strand, within CSW01_03435at 695.669 kb on + strand, within CSW01_03435at 695.672 kb on - strand, within CSW01_03435at 695.674 kb on + strand, within CSW01_03435at 695.713 kb on + strand, within CSW01_03435at 695.993 kb on + strandat 695.993 kb on + strandat 695.993 kb on + strandat 696.001 kb on - strandat 696.001 kb on - strandat 696.037 kb on + strandat 696.038 kb on + strandat 696.046 kb on - strandat 696.209 kb on + strandat 696.260 kb on + strandat 696.387 kb on - strand, within CSW01_03440at 696.511 kb on - strand, within CSW01_03440at 696.595 kb on - strand, within CSW01_03440at 696.702 kb on + strand, within CSW01_03440at 696.736 kb on - strand, within CSW01_03440at 696.738 kb on + strand, within CSW01_03440at 696.746 kb on - strand, within CSW01_03440at 696.830 kb on + strand, within CSW01_03440at 696.830 kb on + strand, within CSW01_03440at 696.830 kb on + strand, within CSW01_03440at 696.838 kb on - strand, within CSW01_03440at 696.944 kb on + strand, within CSW01_03440at 696.949 kb on + strand, within CSW01_03440at 697.061 kb on + strand, within CSW01_03440at 697.114 kb on + strand, within CSW01_03440at 697.127 kb on - strand, within CSW01_03440at 697.247 kb on + strand, within CSW01_03440at 697.328 kb on + strand, within CSW01_03440at 697.354 kb on + strand, within CSW01_03440at 697.446 kb on + strand, within CSW01_03440at 697.454 kb on - strand, within CSW01_03440at 697.550 kb on - strand, within CSW01_03440at 697.669 kb on + strand, within CSW01_03440at 697.710 kb on + strand, within CSW01_03440at 697.710 kb on + strand, within CSW01_03440at 697.710 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.734 kb on + strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.797 kb on + strand, within CSW01_03440at 697.821 kb on + strand, within CSW01_03440at 697.904 kb on - strand, within CSW01_03440at 697.980 kb on - strandat 698.035 kb on - strandat 698.080 kb on + strandat 698.124 kb on - strandat 698.139 kb on + strandat 698.147 kb on - strandat 698.147 kb on - strandat 698.194 kb on - strandat 698.207 kb on - strandat 698.230 kb on - strandat 698.284 kb on - strandat 698.346 kb on + strandat 698.496 kb on + strand, within CSW01_03445at 698.496 kb on + strand, within CSW01_03445at 698.515 kb on + strand, within CSW01_03445at 698.515 kb on + strand, within CSW01_03445at 698.523 kb on - strand, within CSW01_03445at 698.591 kb on + strand, within CSW01_03445at 698.591 kb on + strand, within CSW01_03445at 698.599 kb on - strand, within CSW01_03445at 698.600 kb on - strand, within CSW01_03445at 698.718 kb on + strand, within CSW01_03445at 698.779 kb on + strand, within CSW01_03445at 699.046 kb on + strand, within CSW01_03450at 699.065 kb on + strand, within CSW01_03450at 699.070 kb on + strand, within CSW01_03450at 699.075 kb on + strand, within CSW01_03450at 699.078 kb on - strand, within CSW01_03450at 699.078 kb on - strand, within CSW01_03450at 699.083 kb on - strand, within CSW01_03450at 699.100 kb on - strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.145 kb on - strand, within CSW01_03450

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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695,136 + CSW01_03435 0.16 +1.0
695,139 - CSW01_03435 0.16 +0.4
695,201 - CSW01_03435 0.22 -2.3
695,205 + CSW01_03435 0.22 -1.2
695,269 - CSW01_03435 0.29 -0.3
695,293 - CSW01_03435 0.31 -0.9
695,295 + CSW01_03435 0.31 -2.4
695,295 + CSW01_03435 0.31 +1.9
695,295 + CSW01_03435 0.31 +0.7
695,295 + CSW01_03435 0.31 +0.3
695,295 + CSW01_03435 0.31 +0.2
695,303 - CSW01_03435 0.32 +0.8
695,303 - CSW01_03435 0.32 -2.9
695,303 - CSW01_03435 0.32 -0.6
695,303 - CSW01_03435 0.32 +2.1
695,303 - CSW01_03435 0.32 +0.1
695,303 - CSW01_03435 0.32 -2.9
695,303 - CSW01_03435 0.32 -1.1
695,413 - CSW01_03435 0.43 -3.8
695,420 + CSW01_03435 0.44 +0.9
695,626 - CSW01_03435 0.64 +0.4
695,648 + CSW01_03435 0.66 +2.0
695,656 - CSW01_03435 0.67 +0.2
695,664 + CSW01_03435 0.68 +0.2
695,669 + CSW01_03435 0.68 +1.1
695,672 - CSW01_03435 0.68 -2.6
695,674 + CSW01_03435 0.69 -3.0
695,713 + CSW01_03435 0.72 +0.4
695,993 + +1.1
695,993 + -0.4
695,993 + +0.4
696,001 - -3.6
696,001 - -0.4
696,037 + +0.4
696,038 + +0.5
696,046 - +0.2
696,209 + +0.1
696,260 + -1.3
696,387 - CSW01_03440 0.14 -1.7
696,511 - CSW01_03440 0.20 -0.9
696,595 - CSW01_03440 0.24 -1.7
696,702 + CSW01_03440 0.29 -2.9
696,736 - CSW01_03440 0.31 -0.2
696,738 + CSW01_03440 0.31 -2.5
696,746 - CSW01_03440 0.31 +0.4
696,830 + CSW01_03440 0.36 +0.4
696,830 + CSW01_03440 0.36 +1.9
696,830 + CSW01_03440 0.36 +0.0
696,838 - CSW01_03440 0.36 +0.7
696,944 + CSW01_03440 0.41 -1.6
696,949 + CSW01_03440 0.41 +0.7
697,061 + CSW01_03440 0.47 +0.7
697,114 + CSW01_03440 0.49 +1.3
697,127 - CSW01_03440 0.50 +1.2
697,247 + CSW01_03440 0.56 -0.1
697,328 + CSW01_03440 0.60 +0.2
697,354 + CSW01_03440 0.61 +0.3
697,446 + CSW01_03440 0.66 +1.1
697,454 - CSW01_03440 0.66 +1.6
697,550 - CSW01_03440 0.71 -0.1
697,669 + CSW01_03440 0.76 +1.4
697,710 + CSW01_03440 0.78 -2.1
697,710 + CSW01_03440 0.78 +0.3
697,710 + CSW01_03440 0.78 +0.4
697,732 + CSW01_03440 0.79 -3.0
697,732 + CSW01_03440 0.79 +0.2
697,732 + CSW01_03440 0.79 -0.7
697,732 + CSW01_03440 0.79 -2.8
697,732 + CSW01_03440 0.79 -0.2
697,732 + CSW01_03440 0.79 +0.3
697,732 + CSW01_03440 0.79 -0.7
697,732 + CSW01_03440 0.79 -0.3
697,734 + CSW01_03440 0.80 +0.4
697,740 - CSW01_03440 0.80 -1.7
697,740 - CSW01_03440 0.80 +0.5
697,740 - CSW01_03440 0.80 +0.6
697,740 - CSW01_03440 0.80 -0.8
697,740 - CSW01_03440 0.80 -0.6
697,740 - CSW01_03440 0.80 -0.9
697,740 - CSW01_03440 0.80 +1.5
697,797 + CSW01_03440 0.83 +1.4
697,821 + CSW01_03440 0.84 +1.1
697,904 - CSW01_03440 0.88 +1.6
697,980 - +1.8
698,035 - +0.6
698,080 + -0.1
698,124 - -0.1
698,139 + +1.6
698,147 - -0.8
698,147 - +0.3
698,194 - +1.4
698,207 - -2.1
698,230 - -1.5
698,284 - +0.4
698,346 + -2.3
698,496 + CSW01_03445 0.21 +1.3
698,496 + CSW01_03445 0.21 -0.7
698,515 + CSW01_03445 0.24 +1.6
698,515 + CSW01_03445 0.24 +0.5
698,523 - CSW01_03445 0.26 -0.7
698,591 + CSW01_03445 0.39 +0.3
698,591 + CSW01_03445 0.39 +0.7
698,599 - CSW01_03445 0.40 -0.0
698,600 - CSW01_03445 0.41 +0.4
698,718 + CSW01_03445 0.63 +0.8
698,779 + CSW01_03445 0.74 -1.3
699,046 + CSW01_03450 0.36 +0.4
699,065 + CSW01_03450 0.39 +1.4
699,070 + CSW01_03450 0.40 -3.5
699,075 + CSW01_03450 0.41 -1.0
699,078 - CSW01_03450 0.41 -2.3
699,078 - CSW01_03450 0.41 +0.6
699,083 - CSW01_03450 0.42 -0.4
699,100 - CSW01_03450 0.45 +0.6
699,114 + CSW01_03450 0.48 -3.4
699,114 + CSW01_03450 0.48 +0.1
699,114 + CSW01_03450 0.48 +0.9
699,114 + CSW01_03450 0.48 -0.1
699,114 + CSW01_03450 0.48 -1.2
699,114 + CSW01_03450 0.48 -1.0
699,114 + CSW01_03450 0.48 +1.8
699,114 + CSW01_03450 0.48 -2.1
699,114 + CSW01_03450 0.48 +1.1
699,122 - CSW01_03450 0.49 +0.6
699,122 - CSW01_03450 0.49 +0.0
699,122 - CSW01_03450 0.49 -1.2
699,122 - CSW01_03450 0.49 +0.6
699,122 - CSW01_03450 0.49 -1.6
699,145 - CSW01_03450 0.54 +1.4

Or see this region's nucleotide sequence