Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03400 and CSW01_03405 are separated by 141 nucleotides CSW01_03405 and CSW01_03410 are separated by 362 nucleotides
CSW01_03400: CSW01_03400 - tRNA pseudouridine(55) synthase TruB, at 687,277 to 688,215
_03400
CSW01_03405: CSW01_03405 - 30S ribosomal protein S15, at 688,357 to 688,626
_03405
CSW01_03410: CSW01_03410 - polyribonucleotide nucleotidyltransferase, at 688,989 to 691,118
_03410
Position (kb) 688
689 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 687.374 kb on - strand, within CSW01_03400 at 687.383 kb on - strand, within CSW01_03400 at 687.454 kb on - strand, within CSW01_03400 at 687.531 kb on - strand, within CSW01_03400 at 687.603 kb on - strand, within CSW01_03400 at 687.632 kb on + strand, within CSW01_03400 at 687.709 kb on - strand, within CSW01_03400 at 687.709 kb on - strand, within CSW01_03400 at 687.736 kb on + strand, within CSW01_03400 at 687.736 kb on - strand, within CSW01_03400 at 687.761 kb on - strand, within CSW01_03400 at 687.767 kb on - strand, within CSW01_03400 at 687.792 kb on - strand, within CSW01_03400 at 687.886 kb on - strand, within CSW01_03400 at 687.917 kb on + strand, within CSW01_03400 at 687.925 kb on - strand, within CSW01_03400 at 687.925 kb on - strand, within CSW01_03400 at 687.925 kb on - strand, within CSW01_03400 at 687.927 kb on + strand, within CSW01_03400 at 687.935 kb on - strand, within CSW01_03400 at 687.935 kb on - strand, within CSW01_03400 at 688.021 kb on + strand, within CSW01_03400 at 688.173 kb on + strand at 688.173 kb on + strand at 688.181 kb on - strand at 688.181 kb on - strand at 688.181 kb on - strand at 688.181 kb on - strand at 688.181 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 687,374 - CSW01_03400 0.10 +0.5 687,383 - CSW01_03400 0.11 -2.8 687,454 - CSW01_03400 0.19 -0.0 687,531 - CSW01_03400 0.27 +0.5 687,603 - CSW01_03400 0.35 +1.2 687,632 + CSW01_03400 0.38 +0.5 687,709 - CSW01_03400 0.46 -1.8 687,709 - CSW01_03400 0.46 -1.0 687,736 + CSW01_03400 0.49 +2.6 687,736 - CSW01_03400 0.49 -2.0 687,761 - CSW01_03400 0.52 +1.3 687,767 - CSW01_03400 0.52 -0.3 687,792 - CSW01_03400 0.55 +1.9 687,886 - CSW01_03400 0.65 +0.7 687,917 + CSW01_03400 0.68 +0.1 687,925 - CSW01_03400 0.69 +0.1 687,925 - CSW01_03400 0.69 +0.5 687,925 - CSW01_03400 0.69 +0.5 687,927 + CSW01_03400 0.69 -0.8 687,935 - CSW01_03400 0.70 +0.6 687,935 - CSW01_03400 0.70 +1.9 688,021 + CSW01_03400 0.79 -3.2 688,173 + -0.1 688,173 + +2.4 688,181 - -0.5 688,181 - -0.4 688,181 - -2.5 688,181 - +0.2 688,181 - +1.6
Or see this region's nucleotide sequence