Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03285 and CSW01_03290 are separated by 253 nucleotides CSW01_03290 and CSW01_03295 are separated by 283 nucleotides CSW01_03295 and CSW01_03300 are separated by 97 nucleotides
CSW01_03285: CSW01_03285 - AI-2E family transporter, at 661,670 to 662,755
_03285
CSW01_03290: CSW01_03290 - glutamate-1-semialdehyde 2,1-aminomutase, at 663,009 to 664,307
_03290
CSW01_03295: CSW01_03295 - iron-sulfur cluster insertion protein ErpA, at 664,591 to 664,932
_03295
CSW01_03300: CSW01_03300 - efflux RND transporter periplasmic adaptor subunit, at 665,030 to 666,130
_03300
Position (kb) 663
664
665 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 662.019 kb on + strand, within CSW01_03285 at 662.019 kb on + strand, within CSW01_03285 at 662.066 kb on + strand, within CSW01_03285 at 662.067 kb on + strand, within CSW01_03285 at 662.120 kb on - strand, within CSW01_03285 at 662.168 kb on + strand, within CSW01_03285 at 662.171 kb on - strand, within CSW01_03285 at 662.176 kb on - strand, within CSW01_03285 at 662.217 kb on + strand, within CSW01_03285 at 662.225 kb on - strand, within CSW01_03285 at 662.225 kb on - strand, within CSW01_03285 at 662.355 kb on + strand, within CSW01_03285 at 662.363 kb on - strand, within CSW01_03285 at 662.393 kb on + strand, within CSW01_03285 at 662.393 kb on + strand, within CSW01_03285 at 662.418 kb on - strand, within CSW01_03285 at 662.420 kb on + strand, within CSW01_03285 at 662.420 kb on + strand, within CSW01_03285 at 662.454 kb on - strand, within CSW01_03285 at 662.477 kb on + strand, within CSW01_03285 at 662.484 kb on - strand, within CSW01_03285 at 662.618 kb on + strand, within CSW01_03285 at 662.633 kb on + strand, within CSW01_03285 at 662.893 kb on + strand at 662.900 kb on + strand at 662.901 kb on - strand at 662.913 kb on - strand at 662.955 kb on - strand at 662.955 kb on - strand at 662.955 kb on - strand at 662.955 kb on - strand at 662.991 kb on + strand at 663.014 kb on - strand at 664.474 kb on - strand at 664.474 kb on - strand at 664.986 kb on - strand at 665.054 kb on + strand at 665.127 kb on + strand at 665.132 kb on + strand at 665.135 kb on - strand at 665.140 kb on - strand, within CSW01_03300 at 665.140 kb on - strand, within CSW01_03300 at 665.248 kb on + strand, within CSW01_03300
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 662,019 + CSW01_03285 0.32 +1.2 662,019 + CSW01_03285 0.32 +1.3 662,066 + CSW01_03285 0.36 -3.4 662,067 + CSW01_03285 0.37 -2.2 662,120 - CSW01_03285 0.41 -0.5 662,168 + CSW01_03285 0.46 -2.6 662,171 - CSW01_03285 0.46 +1.2 662,176 - CSW01_03285 0.47 +0.3 662,217 + CSW01_03285 0.50 -0.3 662,225 - CSW01_03285 0.51 -0.6 662,225 - CSW01_03285 0.51 -2.1 662,355 + CSW01_03285 0.63 +2.6 662,363 - CSW01_03285 0.64 +1.0 662,393 + CSW01_03285 0.67 -3.4 662,393 + CSW01_03285 0.67 +0.4 662,418 - CSW01_03285 0.69 +0.7 662,420 + CSW01_03285 0.69 +0.8 662,420 + CSW01_03285 0.69 +0.2 662,454 - CSW01_03285 0.72 -2.5 662,477 + CSW01_03285 0.74 +1.0 662,484 - CSW01_03285 0.75 -0.2 662,618 + CSW01_03285 0.87 -2.7 662,633 + CSW01_03285 0.89 -0.1 662,893 + -1.3 662,900 + +0.0 662,901 - -1.1 662,913 - -2.0 662,955 - +0.9 662,955 - -0.2 662,955 - -1.8 662,955 - +0.8 662,991 + +0.1 663,014 - +0.3 664,474 - +1.3 664,474 - +0.2 664,986 - +1.3 665,054 + -0.6 665,127 + -0.9 665,132 + -3.3 665,135 - -3.2 665,140 - CSW01_03300 0.10 -0.0 665,140 - CSW01_03300 0.10 +1.3 665,248 + CSW01_03300 0.20 -2.8
Or see this region's nucleotide sequence