Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03260

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03255 and CSW01_03260 are separated by 2 nucleotidesCSW01_03260 and CSW01_03265 are separated by 169 nucleotides CSW01_03255: CSW01_03255 - ABC transporter permease, at 652,213 to 653,238 _03255 CSW01_03260: CSW01_03260 - ABC transporter permease, at 653,241 to 654,227 _03260 CSW01_03265: CSW01_03265 - peptide ABC transporter substrate-binding protein, at 654,397 to 656,067 _03265 Position (kb) 653 654 655Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 652.300 kb on + strandat 652.308 kb on - strandat 652.308 kb on - strandat 652.354 kb on + strand, within CSW01_03255at 652.355 kb on - strand, within CSW01_03255at 652.362 kb on + strand, within CSW01_03255at 652.362 kb on - strand, within CSW01_03255at 652.362 kb on - strand, within CSW01_03255at 652.362 kb on - strand, within CSW01_03255at 652.362 kb on - strand, within CSW01_03255at 652.376 kb on - strand, within CSW01_03255at 652.429 kb on - strand, within CSW01_03255at 652.439 kb on - strand, within CSW01_03255at 652.447 kb on - strand, within CSW01_03255at 652.456 kb on + strand, within CSW01_03255at 652.470 kb on - strand, within CSW01_03255at 652.482 kb on + strand, within CSW01_03255at 652.500 kb on - strand, within CSW01_03255at 652.634 kb on - strand, within CSW01_03255at 652.662 kb on + strand, within CSW01_03255at 652.662 kb on + strand, within CSW01_03255at 652.662 kb on + strand, within CSW01_03255at 652.670 kb on - strand, within CSW01_03255at 652.670 kb on - strand, within CSW01_03255at 652.670 kb on - strand, within CSW01_03255at 652.694 kb on + strand, within CSW01_03255at 652.694 kb on + strand, within CSW01_03255at 652.702 kb on - strand, within CSW01_03255at 652.702 kb on - strand, within CSW01_03255at 652.702 kb on - strand, within CSW01_03255at 652.702 kb on - strand, within CSW01_03255at 652.702 kb on - strand, within CSW01_03255at 652.702 kb on - strand, within CSW01_03255at 652.714 kb on + strand, within CSW01_03255at 652.732 kb on + strand, within CSW01_03255at 652.732 kb on + strand, within CSW01_03255at 652.740 kb on - strand, within CSW01_03255at 652.740 kb on - strand, within CSW01_03255at 652.748 kb on - strand, within CSW01_03255at 652.752 kb on + strand, within CSW01_03255at 652.776 kb on + strand, within CSW01_03255at 652.776 kb on + strand, within CSW01_03255at 652.784 kb on - strand, within CSW01_03255at 652.921 kb on + strand, within CSW01_03255at 652.934 kb on + strand, within CSW01_03255at 652.976 kb on - strand, within CSW01_03255at 653.007 kb on + strand, within CSW01_03255at 653.035 kb on + strand, within CSW01_03255at 653.043 kb on - strand, within CSW01_03255at 653.116 kb on - strand, within CSW01_03255at 653.126 kb on - strand, within CSW01_03255at 653.134 kb on + strand, within CSW01_03255at 653.142 kb on + strandat 653.150 kb on - strandat 653.180 kb on - strandat 653.256 kb on + strandat 653.276 kb on - strandat 653.276 kb on - strandat 653.278 kb on + strandat 653.286 kb on - strandat 653.286 kb on - strandat 653.300 kb on + strandat 653.308 kb on - strandat 653.308 kb on - strandat 653.308 kb on - strandat 653.308 kb on - strandat 653.308 kb on - strandat 653.308 kb on - strandat 653.331 kb on - strandat 653.379 kb on + strand, within CSW01_03260at 653.379 kb on + strand, within CSW01_03260at 653.379 kb on + strand, within CSW01_03260at 653.379 kb on + strand, within CSW01_03260at 653.379 kb on + strand, within CSW01_03260at 653.379 kb on + strand, within CSW01_03260at 653.384 kb on + strand, within CSW01_03260at 653.384 kb on + strand, within CSW01_03260at 653.387 kb on - strand, within CSW01_03260at 653.387 kb on - strand, within CSW01_03260at 653.387 kb on - strand, within CSW01_03260at 653.387 kb on - strand, within CSW01_03260at 653.387 kb on - strand, within CSW01_03260at 653.387 kb on - strand, within CSW01_03260at 653.387 kb on - strand, within CSW01_03260at 653.387 kb on - strand, within CSW01_03260at 653.389 kb on - strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.392 kb on - strand, within CSW01_03260at 653.392 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.404 kb on - strand, within CSW01_03260at 653.415 kb on + strand, within CSW01_03260at 653.488 kb on - strand, within CSW01_03260at 653.490 kb on + strand, within CSW01_03260at 653.505 kb on + strand, within CSW01_03260at 653.513 kb on - strand, within CSW01_03260at 653.513 kb on - strand, within CSW01_03260at 653.513 kb on - strand, within CSW01_03260at 653.513 kb on - strand, within CSW01_03260at 653.513 kb on - strand, within CSW01_03260at 653.531 kb on + strand, within CSW01_03260at 653.531 kb on + strand, within CSW01_03260at 653.533 kb on + strand, within CSW01_03260at 653.539 kb on + strand, within CSW01_03260at 653.581 kb on - strand, within CSW01_03260at 653.608 kb on + strand, within CSW01_03260at 653.629 kb on + strand, within CSW01_03260at 653.637 kb on - strand, within CSW01_03260at 653.676 kb on + strand, within CSW01_03260at 653.710 kb on + strand, within CSW01_03260at 653.710 kb on + strand, within CSW01_03260at 653.712 kb on - strand, within CSW01_03260at 653.725 kb on + strand, within CSW01_03260at 653.743 kb on - strand, within CSW01_03260at 653.865 kb on + strand, within CSW01_03260at 653.870 kb on + strand, within CSW01_03260at 653.870 kb on + strand, within CSW01_03260at 653.870 kb on + strand, within CSW01_03260at 653.870 kb on + strand, within CSW01_03260at 653.878 kb on - strand, within CSW01_03260at 653.878 kb on - strand, within CSW01_03260at 653.911 kb on + strand, within CSW01_03260at 653.928 kb on + strand, within CSW01_03260at 653.938 kb on + strand, within CSW01_03260at 653.938 kb on + strand, within CSW01_03260at 653.990 kb on + strand, within CSW01_03260at 653.998 kb on - strand, within CSW01_03260at 653.998 kb on - strand, within CSW01_03260at 654.007 kb on + strand, within CSW01_03260at 654.015 kb on - strand, within CSW01_03260at 654.017 kb on + strand, within CSW01_03260at 654.019 kb on + strand, within CSW01_03260at 654.024 kb on + strand, within CSW01_03260at 654.065 kb on + strand, within CSW01_03260at 654.083 kb on + strand, within CSW01_03260at 654.117 kb on + strand, within CSW01_03260at 654.170 kb on - strandat 654.229 kb on + strandat 654.229 kb on + strandat 654.229 kb on + strandat 654.257 kb on - strandat 654.322 kb on + strandat 654.330 kb on - strandat 654.349 kb on + strandat 654.349 kb on - strandat 654.357 kb on - strandat 654.368 kb on - strandat 654.424 kb on + strandat 654.427 kb on + strandat 654.427 kb on + strandat 654.509 kb on + strandat 654.509 kb on + strandat 654.509 kb on + strandat 654.509 kb on + strandat 654.509 kb on + strandat 654.517 kb on - strandat 654.517 kb on - strandat 654.517 kb on - strandat 654.517 kb on - strandat 654.574 kb on + strand, within CSW01_03265at 654.662 kb on + strand, within CSW01_03265at 654.700 kb on + strand, within CSW01_03265at 654.727 kb on + strand, within CSW01_03265at 654.744 kb on + strand, within CSW01_03265at 654.752 kb on - strand, within CSW01_03265at 654.805 kb on + strand, within CSW01_03265at 654.805 kb on + strand, within CSW01_03265at 654.805 kb on + strand, within CSW01_03265at 654.813 kb on - strand, within CSW01_03265at 654.813 kb on - strand, within CSW01_03265at 654.813 kb on - strand, within CSW01_03265at 654.864 kb on + strand, within CSW01_03265at 654.864 kb on + strand, within CSW01_03265at 654.876 kb on + strand, within CSW01_03265at 654.897 kb on - strand, within CSW01_03265at 654.899 kb on + strand, within CSW01_03265at 654.907 kb on - strand, within CSW01_03265at 654.915 kb on - strand, within CSW01_03265at 654.927 kb on + strand, within CSW01_03265at 654.935 kb on - strand, within CSW01_03265at 655.020 kb on + strand, within CSW01_03265at 655.028 kb on - strand, within CSW01_03265at 655.092 kb on + strand, within CSW01_03265at 655.156 kb on + strand, within CSW01_03265at 655.164 kb on - strand, within CSW01_03265at 655.188 kb on - strand, within CSW01_03265

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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652,300 + -0.9
652,308 - -1.0
652,308 - +0.1
652,354 + CSW01_03255 0.14 +2.0
652,355 - CSW01_03255 0.14 -0.3
652,362 + CSW01_03255 0.15 -0.1
652,362 - CSW01_03255 0.15 +0.8
652,362 - CSW01_03255 0.15 +0.6
652,362 - CSW01_03255 0.15 +1.5
652,362 - CSW01_03255 0.15 +0.4
652,376 - CSW01_03255 0.16 -0.7
652,429 - CSW01_03255 0.21 +1.4
652,439 - CSW01_03255 0.22 +0.0
652,447 - CSW01_03255 0.23 +0.9
652,456 + CSW01_03255 0.24 -0.2
652,470 - CSW01_03255 0.25 +0.3
652,482 + CSW01_03255 0.26 +0.6
652,500 - CSW01_03255 0.28 -2.7
652,634 - CSW01_03255 0.41 +0.4
652,662 + CSW01_03255 0.44 -0.5
652,662 + CSW01_03255 0.44 -3.8
652,662 + CSW01_03255 0.44 +1.1
652,670 - CSW01_03255 0.45 -2.6
652,670 - CSW01_03255 0.45 -1.2
652,670 - CSW01_03255 0.45 -1.6
652,694 + CSW01_03255 0.47 +1.2
652,694 + CSW01_03255 0.47 -0.2
652,702 - CSW01_03255 0.48 +1.1
652,702 - CSW01_03255 0.48 +1.3
652,702 - CSW01_03255 0.48 -1.3
652,702 - CSW01_03255 0.48 +0.5
652,702 - CSW01_03255 0.48 -3.0
652,702 - CSW01_03255 0.48 +0.2
652,714 + CSW01_03255 0.49 +1.0
652,732 + CSW01_03255 0.51 -0.4
652,732 + CSW01_03255 0.51 +0.4
652,740 - CSW01_03255 0.51 -1.9
652,740 - CSW01_03255 0.51 -3.8
652,748 - CSW01_03255 0.52 +0.1
652,752 + CSW01_03255 0.53 +0.7
652,776 + CSW01_03255 0.55 +1.1
652,776 + CSW01_03255 0.55 +0.4
652,784 - CSW01_03255 0.56 +2.0
652,921 + CSW01_03255 0.69 +0.1
652,934 + CSW01_03255 0.70 -1.0
652,976 - CSW01_03255 0.74 +0.5
653,007 + CSW01_03255 0.77 -1.0
653,035 + CSW01_03255 0.80 +0.9
653,043 - CSW01_03255 0.81 -0.6
653,116 - CSW01_03255 0.88 -1.2
653,126 - CSW01_03255 0.89 -3.3
653,134 + CSW01_03255 0.90 +0.4
653,142 + -1.9
653,150 - +0.3
653,180 - +0.1
653,256 + +0.2
653,276 - -0.1
653,276 - -0.3
653,278 + -2.2
653,286 - -0.5
653,286 - +1.6
653,300 + -3.1
653,308 - -0.5
653,308 - +1.2
653,308 - +2.6
653,308 - +0.7
653,308 - -2.4
653,308 - +1.9
653,331 - +1.5
653,379 + CSW01_03260 0.14 -1.6
653,379 + CSW01_03260 0.14 +0.1
653,379 + CSW01_03260 0.14 -3.7
653,379 + CSW01_03260 0.14 +0.9
653,379 + CSW01_03260 0.14 -2.2
653,379 + CSW01_03260 0.14 +0.8
653,384 + CSW01_03260 0.14 -0.0
653,384 + CSW01_03260 0.14 +0.7
653,387 - CSW01_03260 0.15 -2.4
653,387 - CSW01_03260 0.15 +0.4
653,387 - CSW01_03260 0.15 -0.4
653,387 - CSW01_03260 0.15 -3.4
653,387 - CSW01_03260 0.15 -0.0
653,387 - CSW01_03260 0.15 -2.9
653,387 - CSW01_03260 0.15 +0.3
653,387 - CSW01_03260 0.15 +1.0
653,389 - CSW01_03260 0.15 -1.4
653,391 + CSW01_03260 0.15 -0.5
653,391 + CSW01_03260 0.15 -2.2
653,391 + CSW01_03260 0.15 +0.2
653,391 + CSW01_03260 0.15 +3.3
653,391 + CSW01_03260 0.15 -1.8
653,391 + CSW01_03260 0.15 -1.3
653,391 + CSW01_03260 0.15 +0.2
653,391 + CSW01_03260 0.15 +0.4
653,391 + CSW01_03260 0.15 +0.5
653,392 - CSW01_03260 0.15 +1.4
653,392 - CSW01_03260 0.15 -0.1
653,399 - CSW01_03260 0.16 +1.4
653,399 - CSW01_03260 0.16 +1.4
653,399 - CSW01_03260 0.16 +0.2
653,399 - CSW01_03260 0.16 +1.1
653,399 - CSW01_03260 0.16 +1.2
653,399 - CSW01_03260 0.16 +2.8
653,399 - CSW01_03260 0.16 +0.3
653,404 - CSW01_03260 0.17 +1.9
653,415 + CSW01_03260 0.18 +1.1
653,488 - CSW01_03260 0.25 +0.4
653,490 + CSW01_03260 0.25 -0.5
653,505 + CSW01_03260 0.27 -0.6
653,513 - CSW01_03260 0.28 -0.5
653,513 - CSW01_03260 0.28 +1.1
653,513 - CSW01_03260 0.28 -2.4
653,513 - CSW01_03260 0.28 -1.1
653,513 - CSW01_03260 0.28 +1.8
653,531 + CSW01_03260 0.29 -2.1
653,531 + CSW01_03260 0.29 -0.2
653,533 + CSW01_03260 0.30 +0.5
653,539 + CSW01_03260 0.30 -0.4
653,581 - CSW01_03260 0.34 -0.5
653,608 + CSW01_03260 0.37 +1.0
653,629 + CSW01_03260 0.39 -0.8
653,637 - CSW01_03260 0.40 +0.3
653,676 + CSW01_03260 0.44 -0.5
653,710 + CSW01_03260 0.48 +1.0
653,710 + CSW01_03260 0.48 +0.3
653,712 - CSW01_03260 0.48 +0.8
653,725 + CSW01_03260 0.49 -1.2
653,743 - CSW01_03260 0.51 +0.6
653,865 + CSW01_03260 0.63 +0.4
653,870 + CSW01_03260 0.64 -0.1
653,870 + CSW01_03260 0.64 -2.7
653,870 + CSW01_03260 0.64 -3.4
653,870 + CSW01_03260 0.64 +0.6
653,878 - CSW01_03260 0.65 -4.6
653,878 - CSW01_03260 0.65 -0.3
653,911 + CSW01_03260 0.68 +0.8
653,928 + CSW01_03260 0.70 -0.1
653,938 + CSW01_03260 0.71 +1.8
653,938 + CSW01_03260 0.71 -4.0
653,990 + CSW01_03260 0.76 -3.1
653,998 - CSW01_03260 0.77 -2.4
653,998 - CSW01_03260 0.77 -0.0
654,007 + CSW01_03260 0.78 +0.1
654,015 - CSW01_03260 0.78 +0.5
654,017 + CSW01_03260 0.79 -3.3
654,019 + CSW01_03260 0.79 +0.2
654,024 + CSW01_03260 0.79 +0.3
654,065 + CSW01_03260 0.83 -1.0
654,083 + CSW01_03260 0.85 -1.0
654,117 + CSW01_03260 0.89 +0.2
654,170 - -1.5
654,229 + +1.1
654,229 + +0.7
654,229 + -1.8
654,257 - -3.1
654,322 + +1.3
654,330 - +1.8
654,349 + -1.7
654,349 - +0.6
654,357 - +0.1
654,368 - -2.9
654,424 + +0.4
654,427 + +1.2
654,427 + +0.4
654,509 + -0.4
654,509 + +0.9
654,509 + -1.1
654,509 + +3.2
654,509 + -3.1
654,517 - -0.3
654,517 - -3.0
654,517 - -1.5
654,517 - +2.4
654,574 + CSW01_03265 0.11 +0.9
654,662 + CSW01_03265 0.16 -1.8
654,700 + CSW01_03265 0.18 +1.2
654,727 + CSW01_03265 0.20 -1.9
654,744 + CSW01_03265 0.21 +0.6
654,752 - CSW01_03265 0.21 -0.2
654,805 + CSW01_03265 0.24 -0.6
654,805 + CSW01_03265 0.24 +0.4
654,805 + CSW01_03265 0.24 +0.5
654,813 - CSW01_03265 0.25 -4.1
654,813 - CSW01_03265 0.25 +0.7
654,813 - CSW01_03265 0.25 +0.4
654,864 + CSW01_03265 0.28 +0.9
654,864 + CSW01_03265 0.28 +0.8
654,876 + CSW01_03265 0.29 +1.0
654,897 - CSW01_03265 0.30 -1.6
654,899 + CSW01_03265 0.30 -1.8
654,907 - CSW01_03265 0.31 -1.2
654,915 - CSW01_03265 0.31 +0.6
654,927 + CSW01_03265 0.32 -0.8
654,935 - CSW01_03265 0.32 +1.0
655,020 + CSW01_03265 0.37 -1.1
655,028 - CSW01_03265 0.38 -0.6
655,092 + CSW01_03265 0.42 +0.1
655,156 + CSW01_03265 0.45 -1.7
655,164 - CSW01_03265 0.46 -3.7
655,188 - CSW01_03265 0.47 -3.0

Or see this region's nucleotide sequence