Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02950

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02945 and CSW01_02950 are separated by 9 nucleotidesCSW01_02950 and CSW01_02955 are separated by 122 nucleotides CSW01_02945: CSW01_02945 - oxaloacetate decarboxylase subunit alpha, at 581,387 to 583,180 _02945 CSW01_02950: CSW01_02950 - sodium ion-translocating decarboxylase subunit beta, at 583,190 to 584,320 _02950 CSW01_02955: CSW01_02955 - NADP-dependent oxidoreductase, at 584,443 to 585,393 _02955 Position (kb) 583 584 585Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 582.204 kb on + strand, within CSW01_02945at 582.205 kb on - strand, within CSW01_02945at 582.232 kb on + strand, within CSW01_02945at 582.252 kb on + strand, within CSW01_02945at 582.252 kb on - strand, within CSW01_02945at 582.267 kb on + strand, within CSW01_02945at 582.331 kb on - strand, within CSW01_02945at 582.340 kb on + strand, within CSW01_02945at 582.391 kb on - strand, within CSW01_02945at 582.408 kb on + strand, within CSW01_02945at 582.408 kb on + strand, within CSW01_02945at 582.448 kb on - strand, within CSW01_02945at 582.466 kb on + strand, within CSW01_02945at 582.506 kb on + strand, within CSW01_02945at 582.506 kb on + strand, within CSW01_02945at 582.514 kb on - strand, within CSW01_02945at 582.514 kb on - strand, within CSW01_02945at 582.519 kb on - strand, within CSW01_02945at 582.521 kb on + strand, within CSW01_02945at 582.540 kb on - strand, within CSW01_02945at 582.620 kb on - strand, within CSW01_02945at 582.635 kb on - strand, within CSW01_02945at 582.692 kb on + strand, within CSW01_02945at 582.692 kb on + strand, within CSW01_02945at 582.699 kb on - strand, within CSW01_02945at 582.700 kb on - strand, within CSW01_02945at 582.700 kb on - strand, within CSW01_02945at 582.750 kb on + strand, within CSW01_02945at 582.750 kb on + strand, within CSW01_02945at 582.750 kb on + strand, within CSW01_02945at 582.750 kb on + strand, within CSW01_02945at 582.758 kb on - strand, within CSW01_02945at 582.760 kb on + strand, within CSW01_02945at 582.770 kb on + strand, within CSW01_02945at 582.799 kb on - strand, within CSW01_02945at 582.814 kb on + strand, within CSW01_02945at 582.830 kb on + strand, within CSW01_02945at 582.846 kb on + strand, within CSW01_02945at 582.846 kb on + strand, within CSW01_02945at 582.854 kb on - strand, within CSW01_02945at 582.854 kb on - strand, within CSW01_02945at 582.861 kb on + strand, within CSW01_02945at 582.866 kb on + strand, within CSW01_02945at 582.873 kb on + strand, within CSW01_02945at 582.893 kb on + strand, within CSW01_02945at 582.896 kb on + strand, within CSW01_02945at 582.896 kb on + strand, within CSW01_02945at 582.896 kb on + strand, within CSW01_02945at 582.916 kb on - strand, within CSW01_02945at 582.916 kb on - strand, within CSW01_02945at 582.959 kb on + strand, within CSW01_02945at 582.966 kb on - strand, within CSW01_02945at 583.090 kb on - strandat 583.107 kb on - strandat 583.163 kb on + strandat 583.168 kb on - strandat 583.171 kb on - strandat 583.171 kb on - strandat 583.251 kb on - strandat 583.277 kb on - strandat 583.277 kb on - strandat 583.385 kb on + strand, within CSW01_02950at 583.393 kb on + strand, within CSW01_02950at 583.393 kb on + strand, within CSW01_02950at 583.401 kb on - strand, within CSW01_02950at 583.406 kb on - strand, within CSW01_02950at 583.413 kb on + strand, within CSW01_02950at 583.508 kb on - strand, within CSW01_02950at 583.574 kb on - strand, within CSW01_02950at 583.574 kb on - strand, within CSW01_02950at 583.588 kb on + strand, within CSW01_02950at 583.683 kb on + strand, within CSW01_02950at 583.700 kb on + strand, within CSW01_02950at 583.700 kb on + strand, within CSW01_02950at 583.700 kb on + strand, within CSW01_02950at 583.700 kb on + strand, within CSW01_02950at 583.707 kb on + strand, within CSW01_02950at 583.708 kb on - strand, within CSW01_02950at 583.751 kb on + strand, within CSW01_02950at 583.800 kb on - strand, within CSW01_02950at 583.869 kb on + strand, within CSW01_02950at 583.877 kb on + strand, within CSW01_02950at 583.885 kb on - strand, within CSW01_02950at 583.996 kb on - strand, within CSW01_02950at 584.022 kb on - strand, within CSW01_02950at 584.077 kb on - strand, within CSW01_02950at 584.157 kb on - strand, within CSW01_02950at 584.176 kb on + strand, within CSW01_02950at 584.184 kb on - strand, within CSW01_02950at 584.184 kb on - strand, within CSW01_02950at 584.184 kb on - strand, within CSW01_02950at 584.184 kb on - strand, within CSW01_02950at 584.184 kb on - strand, within CSW01_02950at 584.184 kb on - strand, within CSW01_02950at 584.253 kb on + strandat 584.261 kb on - strandat 584.270 kb on + strandat 584.270 kb on + strandat 584.278 kb on - strandat 584.278 kb on - strandat 584.278 kb on - strandat 584.439 kb on - strandat 584.470 kb on - strandat 584.593 kb on + strand, within CSW01_02955at 584.593 kb on + strand, within CSW01_02955at 584.593 kb on + strand, within CSW01_02955at 584.601 kb on - strand, within CSW01_02955at 584.601 kb on - strand, within CSW01_02955at 584.601 kb on - strand, within CSW01_02955at 584.693 kb on + strand, within CSW01_02955at 584.693 kb on + strand, within CSW01_02955at 584.693 kb on + strand, within CSW01_02955at 584.693 kb on + strand, within CSW01_02955at 584.701 kb on - strand, within CSW01_02955at 584.706 kb on + strand, within CSW01_02955at 584.714 kb on - strand, within CSW01_02955at 584.768 kb on - strand, within CSW01_02955at 584.840 kb on - strand, within CSW01_02955at 584.854 kb on + strand, within CSW01_02955at 584.860 kb on + strand, within CSW01_02955at 584.868 kb on - strand, within CSW01_02955at 584.896 kb on + strand, within CSW01_02955at 584.926 kb on + strand, within CSW01_02955at 584.934 kb on - strand, within CSW01_02955at 584.976 kb on - strand, within CSW01_02955at 585.057 kb on + strand, within CSW01_02955at 585.149 kb on + strand, within CSW01_02955at 585.149 kb on + strand, within CSW01_02955at 585.180 kb on - strand, within CSW01_02955at 585.211 kb on + strand, within CSW01_02955at 585.231 kb on + strand, within CSW01_02955at 585.244 kb on - strand, within CSW01_02955at 585.246 kb on + strand, within CSW01_02955at 585.246 kb on + strand, within CSW01_02955at 585.254 kb on - strand, within CSW01_02955at 585.261 kb on + strand, within CSW01_02955at 585.261 kb on + strand, within CSW01_02955at 585.272 kb on + strand, within CSW01_02955at 585.272 kb on + strand, within CSW01_02955at 585.272 kb on + strand, within CSW01_02955at 585.303 kb on + strandat 585.313 kb on + strandat 585.313 kb on - strandat 585.313 kb on - strandat 585.315 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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582,204 + CSW01_02945 0.46 -2.8
582,205 - CSW01_02945 0.46 -2.0
582,232 + CSW01_02945 0.47 +1.3
582,252 + CSW01_02945 0.48 +0.7
582,252 - CSW01_02945 0.48 +0.3
582,267 + CSW01_02945 0.49 -2.3
582,331 - CSW01_02945 0.53 +1.0
582,340 + CSW01_02945 0.53 +1.0
582,391 - CSW01_02945 0.56 +1.5
582,408 + CSW01_02945 0.57 +0.4
582,408 + CSW01_02945 0.57 +1.9
582,448 - CSW01_02945 0.59 +1.2
582,466 + CSW01_02945 0.60 -1.2
582,506 + CSW01_02945 0.62 -0.6
582,506 + CSW01_02945 0.62 +0.7
582,514 - CSW01_02945 0.63 -2.3
582,514 - CSW01_02945 0.63 +0.8
582,519 - CSW01_02945 0.63 +0.4
582,521 + CSW01_02945 0.63 +0.8
582,540 - CSW01_02945 0.64 +0.9
582,620 - CSW01_02945 0.69 -2.7
582,635 - CSW01_02945 0.70 -0.9
582,692 + CSW01_02945 0.73 -0.3
582,692 + CSW01_02945 0.73 -1.2
582,699 - CSW01_02945 0.73 +0.4
582,700 - CSW01_02945 0.73 +0.7
582,700 - CSW01_02945 0.73 -3.1
582,750 + CSW01_02945 0.76 +1.8
582,750 + CSW01_02945 0.76 +0.7
582,750 + CSW01_02945 0.76 +0.9
582,750 + CSW01_02945 0.76 -2.5
582,758 - CSW01_02945 0.76 +2.0
582,760 + CSW01_02945 0.77 -1.1
582,770 + CSW01_02945 0.77 -3.2
582,799 - CSW01_02945 0.79 +1.4
582,814 + CSW01_02945 0.80 +1.1
582,830 + CSW01_02945 0.80 +0.2
582,846 + CSW01_02945 0.81 -0.6
582,846 + CSW01_02945 0.81 +1.7
582,854 - CSW01_02945 0.82 -1.5
582,854 - CSW01_02945 0.82 -2.3
582,861 + CSW01_02945 0.82 +0.1
582,866 + CSW01_02945 0.82 -4.3
582,873 + CSW01_02945 0.83 +0.3
582,893 + CSW01_02945 0.84 +0.5
582,896 + CSW01_02945 0.84 -4.0
582,896 + CSW01_02945 0.84 +0.5
582,896 + CSW01_02945 0.84 +0.5
582,916 - CSW01_02945 0.85 +0.2
582,916 - CSW01_02945 0.85 -2.1
582,959 + CSW01_02945 0.88 -0.6
582,966 - CSW01_02945 0.88 -1.2
583,090 - -1.4
583,107 - +0.1
583,163 + -0.3
583,168 - -1.9
583,171 - -2.7
583,171 - -3.1
583,251 - +0.8
583,277 - -0.2
583,277 - +0.9
583,385 + CSW01_02950 0.17 -0.4
583,393 + CSW01_02950 0.18 -0.7
583,393 + CSW01_02950 0.18 +1.0
583,401 - CSW01_02950 0.19 +0.5
583,406 - CSW01_02950 0.19 -3.1
583,413 + CSW01_02950 0.20 +1.2
583,508 - CSW01_02950 0.28 -2.4
583,574 - CSW01_02950 0.34 -0.4
583,574 - CSW01_02950 0.34 +2.5
583,588 + CSW01_02950 0.35 -1.3
583,683 + CSW01_02950 0.44 +0.5
583,700 + CSW01_02950 0.45 +0.6
583,700 + CSW01_02950 0.45 +0.9
583,700 + CSW01_02950 0.45 +1.4
583,700 + CSW01_02950 0.45 +0.2
583,707 + CSW01_02950 0.46 +0.5
583,708 - CSW01_02950 0.46 +0.7
583,751 + CSW01_02950 0.50 -1.0
583,800 - CSW01_02950 0.54 -0.3
583,869 + CSW01_02950 0.60 -2.0
583,877 + CSW01_02950 0.61 +0.7
583,885 - CSW01_02950 0.61 -0.4
583,996 - CSW01_02950 0.71 -0.9
584,022 - CSW01_02950 0.74 +0.4
584,077 - CSW01_02950 0.78 -0.3
584,157 - CSW01_02950 0.85 -1.2
584,176 + CSW01_02950 0.87 +2.0
584,184 - CSW01_02950 0.88 +0.9
584,184 - CSW01_02950 0.88 +1.5
584,184 - CSW01_02950 0.88 +1.2
584,184 - CSW01_02950 0.88 +1.0
584,184 - CSW01_02950 0.88 -0.5
584,184 - CSW01_02950 0.88 +0.5
584,253 + +0.2
584,261 - +0.8
584,270 + -2.7
584,270 + -0.7
584,278 - +0.1
584,278 - +0.1
584,278 - -0.6
584,439 - -3.1
584,470 - +1.2
584,593 + CSW01_02955 0.16 -1.0
584,593 + CSW01_02955 0.16 -2.9
584,593 + CSW01_02955 0.16 +0.6
584,601 - CSW01_02955 0.17 -0.1
584,601 - CSW01_02955 0.17 -0.3
584,601 - CSW01_02955 0.17 -3.6
584,693 + CSW01_02955 0.26 -2.3
584,693 + CSW01_02955 0.26 +1.5
584,693 + CSW01_02955 0.26 +0.5
584,693 + CSW01_02955 0.26 +0.4
584,701 - CSW01_02955 0.27 +0.5
584,706 + CSW01_02955 0.28 -2.6
584,714 - CSW01_02955 0.28 -1.0
584,768 - CSW01_02955 0.34 -2.0
584,840 - CSW01_02955 0.42 -2.8
584,854 + CSW01_02955 0.43 -3.2
584,860 + CSW01_02955 0.44 -0.8
584,868 - CSW01_02955 0.45 -1.6
584,896 + CSW01_02955 0.48 -3.0
584,926 + CSW01_02955 0.51 -1.2
584,934 - CSW01_02955 0.52 +0.5
584,976 - CSW01_02955 0.56 -4.1
585,057 + CSW01_02955 0.65 -2.6
585,149 + CSW01_02955 0.74 -2.0
585,149 + CSW01_02955 0.74 +1.2
585,180 - CSW01_02955 0.77 -0.9
585,211 + CSW01_02955 0.81 -1.2
585,231 + CSW01_02955 0.83 +1.0
585,244 - CSW01_02955 0.84 +1.1
585,246 + CSW01_02955 0.84 +1.1
585,246 + CSW01_02955 0.84 -3.1
585,254 - CSW01_02955 0.85 -0.2
585,261 + CSW01_02955 0.86 -0.9
585,261 + CSW01_02955 0.86 -0.2
585,272 + CSW01_02955 0.87 -1.0
585,272 + CSW01_02955 0.87 +0.8
585,272 + CSW01_02955 0.87 +1.8
585,303 + +1.3
585,313 + -3.8
585,313 - -3.8
585,313 - -0.6
585,315 + -0.1

Or see this region's nucleotide sequence