Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02875 and CSW01_02880 are separated by 132 nucleotides CSW01_02880 and CSW01_02885 are separated by 172 nucleotides CSW01_02885 and CSW01_02890 are separated by 203 nucleotides
CSW01_02875: CSW01_02875 - DNA recombination/repair protein RecA, at 573,437 to 574,501
_02875
CSW01_02880: CSW01_02880 - regulatory protein RecX, at 574,634 to 575,092
_02880
CSW01_02885: CSW01_02885 - alanine--tRNA ligase, at 575,265 to 577,847
_02885
CSW01_02890: CSW01_02890 - aspartate kinase, at 578,051 to 579,238
_02890
Position (kb) 575
576
577
578 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 574.268 kb on - strand, within CSW01_02875 at 574.308 kb on + strand, within CSW01_02875 at 574.414 kb on + strand at 574.495 kb on + strand at 574.523 kb on + strand at 574.592 kb on + strand at 574.637 kb on + strand at 574.638 kb on + strand at 574.676 kb on + strand at 574.676 kb on + strand at 574.786 kb on + strand, within CSW01_02880 at 574.817 kb on - strand, within CSW01_02880 at 574.848 kb on - strand, within CSW01_02880 at 574.848 kb on - strand, within CSW01_02880 at 574.848 kb on - strand, within CSW01_02880 at 574.850 kb on + strand, within CSW01_02880 at 574.863 kb on - strand, within CSW01_02880 at 574.926 kb on + strand, within CSW01_02880 at 574.945 kb on + strand, within CSW01_02880 at 575.030 kb on - strand, within CSW01_02880 at 575.051 kb on - strand at 575.066 kb on + strand at 575.075 kb on + strand at 575.083 kb on - strand at 575.096 kb on + strand at 575.104 kb on - strand at 575.142 kb on - strand at 575.189 kb on + strand at 577.924 kb on - strand at 577.974 kb on + strand at 578.105 kb on - strand at 578.148 kb on - strand at 578.168 kb on + strand at 578.268 kb on + strand, within CSW01_02890 at 578.268 kb on + strand, within CSW01_02890 at 578.268 kb on + strand, within CSW01_02890 at 578.273 kb on + strand, within CSW01_02890 at 578.276 kb on + strand, within CSW01_02890 at 578.301 kb on + strand, within CSW01_02890 at 578.495 kb on + strand, within CSW01_02890 at 578.495 kb on + strand, within CSW01_02890 at 578.503 kb on - strand, within CSW01_02890 at 578.518 kb on + strand, within CSW01_02890 at 578.518 kb on + strand, within CSW01_02890 at 578.518 kb on + strand, within CSW01_02890 at 578.528 kb on + strand, within CSW01_02890 at 578.551 kb on - strand, within CSW01_02890 at 578.586 kb on + strand, within CSW01_02890 at 578.594 kb on - strand, within CSW01_02890 at 578.595 kb on + strand, within CSW01_02890 at 578.595 kb on - strand, within CSW01_02890 at 578.603 kb on - strand, within CSW01_02890 at 578.619 kb on + strand, within CSW01_02890 at 578.630 kb on - strand, within CSW01_02890 at 578.684 kb on + strand, within CSW01_02890 at 578.684 kb on + strand, within CSW01_02890 at 578.692 kb on + strand, within CSW01_02890 at 578.719 kb on - strand, within CSW01_02890 at 578.719 kb on - strand, within CSW01_02890 at 578.726 kb on + strand, within CSW01_02890 at 578.809 kb on - strand, within CSW01_02890
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 574,268 - CSW01_02875 0.78 -1.8 574,308 + CSW01_02875 0.82 -0.6 574,414 + +1.8 574,495 + +0.1 574,523 + -0.1 574,592 + +0.2 574,637 + +0.5 574,638 + -0.6 574,676 + -0.2 574,676 + -0.1 574,786 + CSW01_02880 0.33 +0.6 574,817 - CSW01_02880 0.40 -0.1 574,848 - CSW01_02880 0.47 +0.2 574,848 - CSW01_02880 0.47 +1.7 574,848 - CSW01_02880 0.47 +0.0 574,850 + CSW01_02880 0.47 -2.0 574,863 - CSW01_02880 0.50 -2.8 574,926 + CSW01_02880 0.64 +0.4 574,945 + CSW01_02880 0.68 -3.8 575,030 - CSW01_02880 0.86 +0.5 575,051 - +0.6 575,066 + -1.7 575,075 + -3.0 575,083 - +1.5 575,096 + +1.3 575,104 - +0.6 575,142 - +1.6 575,189 + +0.5 577,924 - -0.7 577,974 + +0.7 578,105 - +0.3 578,148 - -4.8 578,168 + -3.1 578,268 + CSW01_02890 0.18 -2.5 578,268 + CSW01_02890 0.18 -2.2 578,268 + CSW01_02890 0.18 -1.9 578,273 + CSW01_02890 0.19 -1.9 578,276 + CSW01_02890 0.19 -0.8 578,301 + CSW01_02890 0.21 +0.5 578,495 + CSW01_02890 0.37 -1.4 578,495 + CSW01_02890 0.37 -3.9 578,503 - CSW01_02890 0.38 +1.3 578,518 + CSW01_02890 0.39 +0.0 578,518 + CSW01_02890 0.39 -2.5 578,518 + CSW01_02890 0.39 -1.9 578,528 + CSW01_02890 0.40 -2.2 578,551 - CSW01_02890 0.42 -1.4 578,586 + CSW01_02890 0.45 -1.0 578,594 - CSW01_02890 0.46 +1.2 578,595 + CSW01_02890 0.46 -0.8 578,595 - CSW01_02890 0.46 -2.5 578,603 - CSW01_02890 0.46 -0.0 578,619 + CSW01_02890 0.48 -0.3 578,630 - CSW01_02890 0.49 -3.8 578,684 + CSW01_02890 0.53 -2.7 578,684 + CSW01_02890 0.53 -2.8 578,692 + CSW01_02890 0.54 +1.2 578,719 - CSW01_02890 0.56 +1.0 578,719 - CSW01_02890 0.56 -2.0 578,726 + CSW01_02890 0.57 -3.5 578,809 - CSW01_02890 0.64 -3.9
Or see this region's nucleotide sequence