Experiment: ICP1_phage_23.5_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02755 and CSW01_02760 are separated by 29 nucleotides CSW01_02760 and CSW01_02765 are separated by 240 nucleotides CSW01_02765 and CSW01_02770 are separated by 153 nucleotides
CSW01_02755: CSW01_02755 - glutamyl-tRNA amidotransferase, at 552,975 to 553,418
_02755
CSW01_02760: CSW01_02760 - 30S ribosomal protein S21, at 553,448 to 553,663
_02760
CSW01_02765: CSW01_02765 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 553,904 to 554,923
_02765
CSW01_02770: CSW01_02770 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 555,077 to 555,889
_02770
Position (kb) 553
554
555 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 552.919 kb on - strand at 552.981 kb on - strand at 553.059 kb on - strand, within CSW01_02755 at 553.149 kb on - strand, within CSW01_02755 at 553.155 kb on - strand, within CSW01_02755 at 553.231 kb on - strand, within CSW01_02755 at 553.814 kb on + strand at 553.829 kb on + strand at 553.849 kb on + strand at 554.902 kb on - strand at 555.114 kb on + strand at 555.137 kb on + strand at 555.145 kb on - strand at 555.145 kb on - strand at 555.157 kb on - strand at 555.183 kb on + strand, within CSW01_02770 at 555.185 kb on + strand, within CSW01_02770 at 555.193 kb on - strand, within CSW01_02770 at 555.205 kb on - strand, within CSW01_02770 at 555.211 kb on - strand, within CSW01_02770 at 555.221 kb on - strand, within CSW01_02770 at 555.282 kb on - strand, within CSW01_02770 at 555.296 kb on + strand, within CSW01_02770 at 555.296 kb on + strand, within CSW01_02770 at 555.296 kb on + strand, within CSW01_02770 at 555.296 kb on + strand, within CSW01_02770 at 555.303 kb on + strand, within CSW01_02770 at 555.304 kb on - strand, within CSW01_02770 at 555.306 kb on - strand, within CSW01_02770 at 555.340 kb on - strand, within CSW01_02770 at 555.340 kb on - strand, within CSW01_02770 at 555.375 kb on + strand, within CSW01_02770 at 555.383 kb on - strand, within CSW01_02770 at 555.385 kb on + strand, within CSW01_02770 at 555.385 kb on + strand, within CSW01_02770 at 555.388 kb on - strand, within CSW01_02770 at 555.499 kb on + strand, within CSW01_02770 at 555.499 kb on + strand, within CSW01_02770 at 555.507 kb on - strand, within CSW01_02770 at 555.589 kb on - strand, within CSW01_02770 at 555.610 kb on - strand, within CSW01_02770 at 555.611 kb on + strand, within CSW01_02770 at 555.619 kb on - strand, within CSW01_02770 at 555.645 kb on + strand, within CSW01_02770 at 555.677 kb on - strand, within CSW01_02770 at 555.697 kb on - strand, within CSW01_02770 at 555.704 kb on - strand, within CSW01_02770 at 555.726 kb on + strand, within CSW01_02770 at 555.749 kb on + strand, within CSW01_02770 at 555.749 kb on + strand, within CSW01_02770 at 555.749 kb on + strand, within CSW01_02770 at 555.749 kb on + strand, within CSW01_02770 at 555.749 kb on + strand, within CSW01_02770 at 555.756 kb on + strand, within CSW01_02770 at 555.757 kb on - strand, within CSW01_02770 at 555.757 kb on - strand, within CSW01_02770 at 555.757 kb on - strand, within CSW01_02770 at 555.757 kb on - strand, within CSW01_02770 at 555.757 kb on - strand, within CSW01_02770 at 555.757 kb on - strand, within CSW01_02770 at 555.764 kb on - strand, within CSW01_02770 at 555.764 kb on - strand, within CSW01_02770 at 555.765 kb on - strand, within CSW01_02770 at 555.765 kb on - strand, within CSW01_02770 at 555.765 kb on - strand, within CSW01_02770 at 555.810 kb on - strand at 555.846 kb on - strand at 555.917 kb on + strand at 555.920 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2 remove 552,919 - +1.3 552,981 - -0.5 553,059 - CSW01_02755 0.19 -4.1 553,149 - CSW01_02755 0.39 -2.9 553,155 - CSW01_02755 0.41 -3.2 553,231 - CSW01_02755 0.58 -1.5 553,814 + -1.0 553,829 + +0.1 553,849 + -0.5 554,902 - -0.7 555,114 + +1.1 555,137 + +0.8 555,145 - +1.6 555,145 - +0.4 555,157 - -2.8 555,183 + CSW01_02770 0.13 -2.6 555,185 + CSW01_02770 0.13 -1.9 555,193 - CSW01_02770 0.14 -0.2 555,205 - CSW01_02770 0.16 -2.2 555,211 - CSW01_02770 0.16 +0.7 555,221 - CSW01_02770 0.18 -1.3 555,282 - CSW01_02770 0.25 +0.3 555,296 + CSW01_02770 0.27 +0.8 555,296 + CSW01_02770 0.27 +0.1 555,296 + CSW01_02770 0.27 +0.5 555,296 + CSW01_02770 0.27 +1.5 555,303 + CSW01_02770 0.28 +0.2 555,304 - CSW01_02770 0.28 -0.3 555,306 - CSW01_02770 0.28 +0.1 555,340 - CSW01_02770 0.32 -0.6 555,340 - CSW01_02770 0.32 -1.1 555,375 + CSW01_02770 0.37 -1.9 555,383 - CSW01_02770 0.38 -1.8 555,385 + CSW01_02770 0.38 +0.8 555,385 + CSW01_02770 0.38 +0.4 555,388 - CSW01_02770 0.38 -2.5 555,499 + CSW01_02770 0.52 -2.3 555,499 + CSW01_02770 0.52 -0.0 555,507 - CSW01_02770 0.53 -0.4 555,589 - CSW01_02770 0.63 -0.7 555,610 - CSW01_02770 0.66 +0.2 555,611 + CSW01_02770 0.66 +0.0 555,619 - CSW01_02770 0.67 -3.4 555,645 + CSW01_02770 0.70 -0.8 555,677 - CSW01_02770 0.74 +0.9 555,697 - CSW01_02770 0.76 +0.5 555,704 - CSW01_02770 0.77 -0.5 555,726 + CSW01_02770 0.80 -0.9 555,749 + CSW01_02770 0.83 +0.7 555,749 + CSW01_02770 0.83 +0.2 555,749 + CSW01_02770 0.83 +0.6 555,749 + CSW01_02770 0.83 -1.3 555,749 + CSW01_02770 0.83 -1.3 555,756 + CSW01_02770 0.84 -1.8 555,757 - CSW01_02770 0.84 +0.8 555,757 - CSW01_02770 0.84 +1.5 555,757 - CSW01_02770 0.84 -1.0 555,757 - CSW01_02770 0.84 -0.0 555,757 - CSW01_02770 0.84 +1.3 555,757 - CSW01_02770 0.84 -1.9 555,764 - CSW01_02770 0.85 -0.5 555,764 - CSW01_02770 0.85 +0.5 555,765 - CSW01_02770 0.85 +1.1 555,765 - CSW01_02770 0.85 -0.5 555,765 - CSW01_02770 0.85 -1.8 555,810 - +0.8 555,846 - +1.0 555,917 + +2.2 555,920 + +1.5
Or see this region's nucleotide sequence