Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02275

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02270 and CSW01_02275 are separated by 473 nucleotidesCSW01_02275 and CSW01_02280 are separated by 148 nucleotides CSW01_02270: CSW01_02270 - malate dehydrogenase, at 460,984 to 461,919 _02270 CSW01_02275: CSW01_02275 - arginine:ornithine antiporter, at 462,393 to 463,799 _02275 CSW01_02280: CSW01_02280 - octaprenyl diphosphate synthase, at 463,948 to 464,919 _02280 Position (kb) 462 463 464Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 461.444 kb on + strand, within CSW01_02270at 461.472 kb on - strand, within CSW01_02270at 461.521 kb on - strand, within CSW01_02270at 461.589 kb on + strand, within CSW01_02270at 461.695 kb on - strand, within CSW01_02270at 461.697 kb on + strand, within CSW01_02270at 461.697 kb on + strand, within CSW01_02270at 461.705 kb on - strand, within CSW01_02270at 461.705 kb on - strand, within CSW01_02270at 461.705 kb on - strand, within CSW01_02270at 461.705 kb on - strand, within CSW01_02270at 461.705 kb on - strand, within CSW01_02270at 461.756 kb on - strand, within CSW01_02270at 461.772 kb on - strand, within CSW01_02270at 461.929 kb on + strandat 461.952 kb on + strandat 462.056 kb on + strandat 462.056 kb on + strandat 462.056 kb on + strandat 462.056 kb on + strandat 462.056 kb on + strandat 462.063 kb on - strandat 462.064 kb on - strandat 462.297 kb on + strandat 462.408 kb on + strandat 462.437 kb on - strandat 462.515 kb on - strandat 462.546 kb on - strand, within CSW01_02275at 462.588 kb on + strand, within CSW01_02275at 462.654 kb on + strand, within CSW01_02275at 462.667 kb on + strand, within CSW01_02275at 462.726 kb on - strand, within CSW01_02275at 462.772 kb on - strand, within CSW01_02275at 462.772 kb on - strand, within CSW01_02275at 462.772 kb on - strand, within CSW01_02275at 462.803 kb on + strand, within CSW01_02275at 462.803 kb on + strand, within CSW01_02275at 462.806 kb on - strand, within CSW01_02275at 462.811 kb on - strand, within CSW01_02275at 462.811 kb on - strand, within CSW01_02275at 462.813 kb on + strand, within CSW01_02275at 462.813 kb on + strand, within CSW01_02275at 462.813 kb on + strand, within CSW01_02275at 462.813 kb on + strand, within CSW01_02275at 462.818 kb on - strand, within CSW01_02275at 462.821 kb on - strand, within CSW01_02275at 462.821 kb on - strand, within CSW01_02275at 462.827 kb on + strand, within CSW01_02275at 462.842 kb on - strand, within CSW01_02275at 462.844 kb on + strand, within CSW01_02275at 462.845 kb on - strand, within CSW01_02275at 462.852 kb on - strand, within CSW01_02275at 462.854 kb on + strand, within CSW01_02275at 462.921 kb on + strand, within CSW01_02275at 462.921 kb on + strand, within CSW01_02275at 462.939 kb on - strand, within CSW01_02275at 462.976 kb on + strand, within CSW01_02275at 462.989 kb on - strand, within CSW01_02275at 462.990 kb on + strand, within CSW01_02275at 462.995 kb on + strand, within CSW01_02275at 462.995 kb on + strand, within CSW01_02275at 463.045 kb on - strand, within CSW01_02275at 463.045 kb on - strand, within CSW01_02275at 463.079 kb on - strand, within CSW01_02275at 463.120 kb on - strand, within CSW01_02275at 463.302 kb on + strand, within CSW01_02275at 463.400 kb on + strand, within CSW01_02275at 463.400 kb on + strand, within CSW01_02275at 463.528 kb on + strand, within CSW01_02275at 463.528 kb on + strand, within CSW01_02275at 463.530 kb on - strand, within CSW01_02275at 463.536 kb on - strand, within CSW01_02275at 463.539 kb on + strand, within CSW01_02275at 463.544 kb on + strand, within CSW01_02275at 463.600 kb on - strand, within CSW01_02275at 463.641 kb on - strand, within CSW01_02275at 463.641 kb on - strand, within CSW01_02275at 463.660 kb on - strandat 463.702 kb on + strandat 463.702 kb on + strandat 463.702 kb on + strandat 463.710 kb on - strandat 463.744 kb on + strandat 463.744 kb on + strandat 463.746 kb on + strandat 463.752 kb on - strandat 463.827 kb on + strandat 463.835 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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461,444 + CSW01_02270 0.49 -1.3
461,472 - CSW01_02270 0.52 -2.3
461,521 - CSW01_02270 0.57 +0.0
461,589 + CSW01_02270 0.65 +1.3
461,695 - CSW01_02270 0.76 +1.1
461,697 + CSW01_02270 0.76 -1.7
461,697 + CSW01_02270 0.76 +0.1
461,705 - CSW01_02270 0.77 -0.2
461,705 - CSW01_02270 0.77 -1.5
461,705 - CSW01_02270 0.77 -2.0
461,705 - CSW01_02270 0.77 -4.3
461,705 - CSW01_02270 0.77 +0.8
461,756 - CSW01_02270 0.82 +0.9
461,772 - CSW01_02270 0.84 -1.1
461,929 + -3.0
461,952 + -3.2
462,056 + +0.3
462,056 + -1.3
462,056 + +1.2
462,056 + -0.6
462,056 + +0.5
462,063 - +0.6
462,064 - -0.7
462,297 + +2.5
462,408 + -1.2
462,437 - +0.9
462,515 - +0.1
462,546 - CSW01_02275 0.11 +1.3
462,588 + CSW01_02275 0.14 +0.1
462,654 + CSW01_02275 0.19 -0.2
462,667 + CSW01_02275 0.19 -0.3
462,726 - CSW01_02275 0.24 +0.8
462,772 - CSW01_02275 0.27 +1.1
462,772 - CSW01_02275 0.27 +0.9
462,772 - CSW01_02275 0.27 +1.2
462,803 + CSW01_02275 0.29 -3.5
462,803 + CSW01_02275 0.29 +0.7
462,806 - CSW01_02275 0.29 +2.2
462,811 - CSW01_02275 0.30 -0.1
462,811 - CSW01_02275 0.30 -1.8
462,813 + CSW01_02275 0.30 -0.2
462,813 + CSW01_02275 0.30 +1.2
462,813 + CSW01_02275 0.30 +0.8
462,813 + CSW01_02275 0.30 +1.3
462,818 - CSW01_02275 0.30 +0.7
462,821 - CSW01_02275 0.30 +0.5
462,821 - CSW01_02275 0.30 +0.5
462,827 + CSW01_02275 0.31 +0.6
462,842 - CSW01_02275 0.32 -2.5
462,844 + CSW01_02275 0.32 +1.5
462,845 - CSW01_02275 0.32 -0.7
462,852 - CSW01_02275 0.33 -0.2
462,854 + CSW01_02275 0.33 -3.1
462,921 + CSW01_02275 0.38 -2.8
462,921 + CSW01_02275 0.38 +1.2
462,939 - CSW01_02275 0.39 -3.1
462,976 + CSW01_02275 0.41 +1.1
462,989 - CSW01_02275 0.42 +0.8
462,990 + CSW01_02275 0.42 -1.6
462,995 + CSW01_02275 0.43 -0.2
462,995 + CSW01_02275 0.43 -2.6
463,045 - CSW01_02275 0.46 -0.3
463,045 - CSW01_02275 0.46 +0.7
463,079 - CSW01_02275 0.49 +0.8
463,120 - CSW01_02275 0.52 +0.8
463,302 + CSW01_02275 0.65 +0.5
463,400 + CSW01_02275 0.72 +0.6
463,400 + CSW01_02275 0.72 -1.8
463,528 + CSW01_02275 0.81 -0.8
463,528 + CSW01_02275 0.81 -0.7
463,530 - CSW01_02275 0.81 +0.2
463,536 - CSW01_02275 0.81 +1.9
463,539 + CSW01_02275 0.81 -1.5
463,544 + CSW01_02275 0.82 -1.4
463,600 - CSW01_02275 0.86 +0.7
463,641 - CSW01_02275 0.89 +0.9
463,641 - CSW01_02275 0.89 -2.6
463,660 - +1.1
463,702 + +0.3
463,702 + -0.6
463,702 + -1.3
463,710 - -1.4
463,744 + -2.0
463,744 + +1.4
463,746 + +1.1
463,752 - -1.1
463,827 + +1.2
463,835 - -2.0

Or see this region's nucleotide sequence