Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01830

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01825 and CSW01_01830 overlap by 4 nucleotidesCSW01_01830 and CSW01_01835 are separated by 171 nucleotidesCSW01_01835 and CSW01_01840 are separated by 32 nucleotides CSW01_01825: CSW01_01825 - DNA mismatch repair protein MutL, at 365,813 to 367,774 _01825 CSW01_01830: CSW01_01830 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 367,771 to 368,718 _01830 CSW01_01835: CSW01_01835 - RNA-binding protein Hfq, at 368,890 to 369,153 _01835 CSW01_01840: CSW01_01840 - GTPase HflX, at 369,186 to 370,475 _01840 Position (kb) 367 368 369Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.799 kb on + strand, within CSW01_01825at 366.799 kb on + strand, within CSW01_01825at 366.799 kb on + strand, within CSW01_01825at 366.799 kb on + strand, within CSW01_01825at 366.807 kb on + strand, within CSW01_01825at 366.807 kb on - strand, within CSW01_01825at 366.807 kb on - strand, within CSW01_01825at 366.807 kb on - strand, within CSW01_01825at 366.814 kb on + strand, within CSW01_01825at 366.814 kb on + strand, within CSW01_01825at 366.821 kb on + strand, within CSW01_01825at 366.822 kb on - strand, within CSW01_01825at 366.822 kb on - strand, within CSW01_01825at 366.871 kb on + strand, within CSW01_01825at 366.940 kb on - strand, within CSW01_01825at 366.984 kb on - strand, within CSW01_01825at 366.998 kb on - strand, within CSW01_01825at 367.003 kb on + strand, within CSW01_01825at 367.010 kb on - strand, within CSW01_01825at 367.151 kb on + strand, within CSW01_01825at 367.247 kb on + strand, within CSW01_01825at 367.247 kb on + strand, within CSW01_01825at 367.247 kb on + strand, within CSW01_01825at 367.247 kb on + strand, within CSW01_01825at 367.248 kb on - strand, within CSW01_01825at 367.255 kb on - strand, within CSW01_01825at 367.255 kb on - strand, within CSW01_01825at 367.255 kb on - strand, within CSW01_01825at 367.255 kb on - strand, within CSW01_01825at 367.271 kb on + strand, within CSW01_01825at 367.277 kb on - strand, within CSW01_01825at 367.279 kb on - strand, within CSW01_01825at 367.279 kb on - strand, within CSW01_01825at 367.279 kb on - strand, within CSW01_01825at 367.279 kb on - strand, within CSW01_01825at 367.329 kb on - strand, within CSW01_01825at 367.338 kb on - strand, within CSW01_01825at 367.338 kb on - strand, within CSW01_01825at 367.338 kb on - strand, within CSW01_01825at 367.343 kb on - strand, within CSW01_01825at 367.383 kb on + strand, within CSW01_01825at 367.446 kb on + strand, within CSW01_01825at 367.456 kb on + strand, within CSW01_01825at 367.479 kb on + strand, within CSW01_01825at 367.479 kb on + strand, within CSW01_01825at 367.575 kb on + strand, within CSW01_01825at 367.580 kb on + strandat 367.588 kb on - strandat 367.588 kb on - strandat 367.588 kb on - strandat 367.608 kb on + strandat 367.608 kb on + strandat 367.616 kb on - strandat 367.616 kb on - strandat 367.677 kb on + strandat 367.797 kb on + strandat 367.797 kb on + strandat 367.967 kb on - strand, within CSW01_01830at 368.052 kb on + strand, within CSW01_01830at 368.106 kb on - strand, within CSW01_01830at 368.220 kb on + strand, within CSW01_01830at 368.347 kb on + strand, within CSW01_01830at 368.378 kb on + strand, within CSW01_01830at 368.378 kb on + strand, within CSW01_01830at 368.386 kb on - strand, within CSW01_01830at 368.453 kb on - strand, within CSW01_01830at 368.629 kb on - strandat 368.637 kb on - strandat 368.637 kb on - strandat 368.720 kb on - strandat 368.779 kb on - strandat 368.906 kb on - strandat 368.908 kb on + strandat 368.983 kb on - strand, within CSW01_01835at 369.143 kb on + strandat 369.264 kb on - strandat 369.299 kb on + strandat 369.299 kb on + strandat 369.307 kb on - strandat 369.338 kb on - strand, within CSW01_01840at 369.365 kb on + strand, within CSW01_01840at 369.373 kb on - strand, within CSW01_01840at 369.433 kb on + strand, within CSW01_01840at 369.498 kb on + strand, within CSW01_01840at 369.498 kb on + strand, within CSW01_01840at 369.506 kb on - strand, within CSW01_01840at 369.506 kb on - strand, within CSW01_01840at 369.507 kb on - strand, within CSW01_01840at 369.575 kb on + strand, within CSW01_01840at 369.636 kb on + strand, within CSW01_01840at 369.639 kb on - strand, within CSW01_01840at 369.644 kb on - strand, within CSW01_01840at 369.662 kb on + strand, within CSW01_01840

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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366,782 + CSW01_01825 0.49 +1.3
366,782 + CSW01_01825 0.49 +0.4
366,782 + CSW01_01825 0.49 -1.1
366,782 + CSW01_01825 0.49 +0.5
366,782 + CSW01_01825 0.49 -2.9
366,782 + CSW01_01825 0.49 +0.8
366,782 + CSW01_01825 0.49 +0.0
366,790 - CSW01_01825 0.50 -0.2
366,790 - CSW01_01825 0.50 +0.3
366,790 - CSW01_01825 0.50 +0.3
366,790 - CSW01_01825 0.50 +1.0
366,790 - CSW01_01825 0.50 -3.4
366,790 - CSW01_01825 0.50 -0.5
366,790 - CSW01_01825 0.50 -0.6
366,790 - CSW01_01825 0.50 +1.6
366,790 - CSW01_01825 0.50 -0.7
366,799 + CSW01_01825 0.50 +0.6
366,799 + CSW01_01825 0.50 +0.6
366,799 + CSW01_01825 0.50 +1.0
366,799 + CSW01_01825 0.50 +1.7
366,807 + CSW01_01825 0.51 +0.6
366,807 - CSW01_01825 0.51 +0.9
366,807 - CSW01_01825 0.51 +0.8
366,807 - CSW01_01825 0.51 -2.5
366,814 + CSW01_01825 0.51 +0.4
366,814 + CSW01_01825 0.51 -1.9
366,821 + CSW01_01825 0.51 +1.6
366,822 - CSW01_01825 0.51 -1.2
366,822 - CSW01_01825 0.51 +0.6
366,871 + CSW01_01825 0.54 +1.2
366,940 - CSW01_01825 0.57 -3.4
366,984 - CSW01_01825 0.60 -0.1
366,998 - CSW01_01825 0.60 -0.8
367,003 + CSW01_01825 0.61 +0.4
367,010 - CSW01_01825 0.61 +0.5
367,151 + CSW01_01825 0.68 -3.1
367,247 + CSW01_01825 0.73 -0.0
367,247 + CSW01_01825 0.73 -0.7
367,247 + CSW01_01825 0.73 +2.0
367,247 + CSW01_01825 0.73 +1.0
367,248 - CSW01_01825 0.73 -0.2
367,255 - CSW01_01825 0.73 -1.6
367,255 - CSW01_01825 0.73 +1.3
367,255 - CSW01_01825 0.73 +1.2
367,255 - CSW01_01825 0.73 +1.2
367,271 + CSW01_01825 0.74 -2.5
367,277 - CSW01_01825 0.75 -0.5
367,279 - CSW01_01825 0.75 -0.5
367,279 - CSW01_01825 0.75 +0.6
367,279 - CSW01_01825 0.75 +0.0
367,279 - CSW01_01825 0.75 +0.5
367,329 - CSW01_01825 0.77 +3.4
367,338 - CSW01_01825 0.78 -0.3
367,338 - CSW01_01825 0.78 +0.9
367,338 - CSW01_01825 0.78 +0.8
367,343 - CSW01_01825 0.78 -2.3
367,383 + CSW01_01825 0.80 -0.4
367,446 + CSW01_01825 0.83 +0.1
367,456 + CSW01_01825 0.84 -3.8
367,479 + CSW01_01825 0.85 -3.6
367,479 + CSW01_01825 0.85 +0.7
367,575 + CSW01_01825 0.90 +0.3
367,580 + -4.4
367,588 - -3.3
367,588 - -0.9
367,588 - -0.1
367,608 + +0.8
367,608 + +0.1
367,616 - -2.4
367,616 - +1.4
367,677 + -0.7
367,797 + +4.1
367,797 + +4.0
367,967 - CSW01_01830 0.21 +3.4
368,052 + CSW01_01830 0.30 +0.8
368,106 - CSW01_01830 0.35 +0.4
368,220 + CSW01_01830 0.47 +3.8
368,347 + CSW01_01830 0.61 +3.2
368,378 + CSW01_01830 0.64 +3.6
368,378 + CSW01_01830 0.64 +3.7
368,386 - CSW01_01830 0.65 +3.0
368,453 - CSW01_01830 0.72 +3.0
368,629 - +4.1
368,637 - +3.8
368,637 - +3.6
368,720 - +0.8
368,779 - -2.6
368,906 - -2.1
368,908 + -1.4
368,983 - CSW01_01835 0.35 -1.9
369,143 + +0.0
369,264 - +0.4
369,299 + +0.2
369,299 + -2.8
369,307 - -2.9
369,338 - CSW01_01840 0.12 -1.4
369,365 + CSW01_01840 0.14 +2.0
369,373 - CSW01_01840 0.14 +0.2
369,433 + CSW01_01840 0.19 +2.0
369,498 + CSW01_01840 0.24 -0.1
369,498 + CSW01_01840 0.24 +0.4
369,506 - CSW01_01840 0.25 -2.1
369,506 - CSW01_01840 0.25 +0.6
369,507 - CSW01_01840 0.25 -0.9
369,575 + CSW01_01840 0.30 +1.5
369,636 + CSW01_01840 0.35 -0.4
369,639 - CSW01_01840 0.35 -0.8
369,644 - CSW01_01840 0.36 +0.8
369,662 + CSW01_01840 0.37 +0.3

Or see this region's nucleotide sequence