Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01525

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01520 and CSW01_01525 are separated by 202 nucleotidesCSW01_01525 and CSW01_01530 are separated by 8 nucleotides CSW01_01520: CSW01_01520 - acetyl-coenzyme A synthetase, at 303,861 to 305,810 _01520 CSW01_01525: CSW01_01525 - 3'-5' exonuclease, at 306,013 to 306,642 _01525 CSW01_01530: CSW01_01530 - cyclic nucleotide-binding protein, at 306,651 to 308,474 _01530 Position (kb) 306 307Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 305.019 kb on + strand, within CSW01_01520at 305.020 kb on - strand, within CSW01_01520at 305.020 kb on - strand, within CSW01_01520at 305.020 kb on - strand, within CSW01_01520at 305.020 kb on - strand, within CSW01_01520at 305.020 kb on - strand, within CSW01_01520at 305.020 kb on - strand, within CSW01_01520at 305.047 kb on + strand, within CSW01_01520at 305.089 kb on - strand, within CSW01_01520at 305.107 kb on + strand, within CSW01_01520at 305.109 kb on - strand, within CSW01_01520at 305.117 kb on + strand, within CSW01_01520at 305.125 kb on - strand, within CSW01_01520at 305.125 kb on - strand, within CSW01_01520at 305.125 kb on - strand, within CSW01_01520at 305.125 kb on - strand, within CSW01_01520at 305.125 kb on - strand, within CSW01_01520at 305.167 kb on - strand, within CSW01_01520at 305.180 kb on + strand, within CSW01_01520at 305.185 kb on + strand, within CSW01_01520at 305.185 kb on + strand, within CSW01_01520at 305.188 kb on - strand, within CSW01_01520at 305.190 kb on + strand, within CSW01_01520at 305.195 kb on + strand, within CSW01_01520at 305.195 kb on + strand, within CSW01_01520at 305.203 kb on - strand, within CSW01_01520at 305.203 kb on - strand, within CSW01_01520at 305.203 kb on - strand, within CSW01_01520at 305.316 kb on - strand, within CSW01_01520at 305.331 kb on + strand, within CSW01_01520at 305.336 kb on + strand, within CSW01_01520at 305.339 kb on - strand, within CSW01_01520at 305.349 kb on - strand, within CSW01_01520at 305.349 kb on - strand, within CSW01_01520at 305.358 kb on + strand, within CSW01_01520at 305.366 kb on - strand, within CSW01_01520at 305.372 kb on - strand, within CSW01_01520at 305.380 kb on + strand, within CSW01_01520at 305.404 kb on - strand, within CSW01_01520at 305.411 kb on + strand, within CSW01_01520at 305.418 kb on - strand, within CSW01_01520at 305.427 kb on + strand, within CSW01_01520at 305.545 kb on - strand, within CSW01_01520at 305.597 kb on + strand, within CSW01_01520at 305.605 kb on - strand, within CSW01_01520at 305.621 kb on + strandat 305.624 kb on - strandat 305.640 kb on + strandat 305.648 kb on - strandat 305.650 kb on - strandat 305.660 kb on + strandat 305.668 kb on - strandat 305.731 kb on - strandat 305.775 kb on - strandat 305.793 kb on + strandat 305.793 kb on + strandat 305.894 kb on + strandat 305.902 kb on - strandat 305.902 kb on - strandat 305.904 kb on + strandat 305.952 kb on - strandat 306.012 kb on - strandat 306.067 kb on + strandat 306.075 kb on - strandat 306.075 kb on - strandat 306.144 kb on + strand, within CSW01_01525at 306.144 kb on + strand, within CSW01_01525at 306.144 kb on + strand, within CSW01_01525at 306.144 kb on + strand, within CSW01_01525at 306.144 kb on + strand, within CSW01_01525at 306.152 kb on - strand, within CSW01_01525at 306.152 kb on - strand, within CSW01_01525at 306.167 kb on + strand, within CSW01_01525at 306.172 kb on + strand, within CSW01_01525at 306.175 kb on - strand, within CSW01_01525at 306.202 kb on + strand, within CSW01_01525at 306.221 kb on - strand, within CSW01_01525at 306.222 kb on + strand, within CSW01_01525at 306.248 kb on + strand, within CSW01_01525at 306.249 kb on + strand, within CSW01_01525at 306.249 kb on + strand, within CSW01_01525at 306.257 kb on - strand, within CSW01_01525at 306.345 kb on - strand, within CSW01_01525at 306.363 kb on - strand, within CSW01_01525at 306.375 kb on - strand, within CSW01_01525at 306.408 kb on - strand, within CSW01_01525at 306.415 kb on - strand, within CSW01_01525at 306.441 kb on + strand, within CSW01_01525at 306.441 kb on + strand, within CSW01_01525at 306.441 kb on + strand, within CSW01_01525at 306.441 kb on + strand, within CSW01_01525at 306.448 kb on + strand, within CSW01_01525at 306.449 kb on - strand, within CSW01_01525at 306.449 kb on - strand, within CSW01_01525at 306.449 kb on - strand, within CSW01_01525at 306.449 kb on - strand, within CSW01_01525at 306.449 kb on - strand, within CSW01_01525at 306.456 kb on - strand, within CSW01_01525at 306.456 kb on - strand, within CSW01_01525at 306.456 kb on - strand, within CSW01_01525at 306.499 kb on + strand, within CSW01_01525at 306.499 kb on + strand, within CSW01_01525at 306.499 kb on + strand, within CSW01_01525at 306.545 kb on + strand, within CSW01_01525at 306.572 kb on + strand, within CSW01_01525at 306.572 kb on + strand, within CSW01_01525at 306.599 kb on + strandat 306.635 kb on - strandat 306.637 kb on + strandat 306.731 kb on + strandat 306.734 kb on - strandat 306.769 kb on + strandat 306.772 kb on - strandat 306.777 kb on - strandat 306.789 kb on - strandat 306.802 kb on - strandat 306.818 kb on + strandat 306.826 kb on - strandat 306.836 kb on + strand, within CSW01_01530at 306.890 kb on + strand, within CSW01_01530at 306.898 kb on + strand, within CSW01_01530at 306.898 kb on - strand, within CSW01_01530at 306.945 kb on + strand, within CSW01_01530at 306.953 kb on - strand, within CSW01_01530at 306.953 kb on - strand, within CSW01_01530at 306.979 kb on - strand, within CSW01_01530at 307.025 kb on - strand, within CSW01_01530at 307.070 kb on + strand, within CSW01_01530at 307.070 kb on + strand, within CSW01_01530at 307.078 kb on - strand, within CSW01_01530at 307.200 kb on - strand, within CSW01_01530at 307.215 kb on - strand, within CSW01_01530at 307.251 kb on - strand, within CSW01_01530at 307.301 kb on + strand, within CSW01_01530at 307.301 kb on + strand, within CSW01_01530at 307.301 kb on + strand, within CSW01_01530at 307.301 kb on + strand, within CSW01_01530at 307.301 kb on + strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.309 kb on - strand, within CSW01_01530at 307.311 kb on - strand, within CSW01_01530at 307.311 kb on - strand, within CSW01_01530at 307.325 kb on - strand, within CSW01_01530at 307.352 kb on - strand, within CSW01_01530at 307.392 kb on - strand, within CSW01_01530at 307.392 kb on - strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.424 kb on + strand, within CSW01_01530at 307.429 kb on + strand, within CSW01_01530at 307.429 kb on + strand, within CSW01_01530at 307.429 kb on + strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.437 kb on - strand, within CSW01_01530at 307.552 kb on - strand, within CSW01_01530at 307.607 kb on - strand, within CSW01_01530at 307.642 kb on - strand, within CSW01_01530

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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305,019 + CSW01_01520 0.59 +0.7
305,020 - CSW01_01520 0.59 -0.8
305,020 - CSW01_01520 0.59 +0.8
305,020 - CSW01_01520 0.59 +2.1
305,020 - CSW01_01520 0.59 +0.8
305,020 - CSW01_01520 0.59 -2.0
305,020 - CSW01_01520 0.59 -0.3
305,047 + CSW01_01520 0.61 +0.6
305,089 - CSW01_01520 0.63 -3.9
305,107 + CSW01_01520 0.64 -0.7
305,109 - CSW01_01520 0.64 +1.3
305,117 + CSW01_01520 0.64 +0.8
305,125 - CSW01_01520 0.65 -3.4
305,125 - CSW01_01520 0.65 +0.6
305,125 - CSW01_01520 0.65 +0.6
305,125 - CSW01_01520 0.65 -0.7
305,125 - CSW01_01520 0.65 +2.2
305,167 - CSW01_01520 0.67 +0.6
305,180 + CSW01_01520 0.68 +1.3
305,185 + CSW01_01520 0.68 +1.4
305,185 + CSW01_01520 0.68 +0.7
305,188 - CSW01_01520 0.68 -1.8
305,190 + CSW01_01520 0.68 -0.2
305,195 + CSW01_01520 0.68 +0.8
305,195 + CSW01_01520 0.68 +1.8
305,203 - CSW01_01520 0.69 -2.7
305,203 - CSW01_01520 0.69 +0.6
305,203 - CSW01_01520 0.69 -1.0
305,316 - CSW01_01520 0.75 +0.1
305,331 + CSW01_01520 0.75 +2.0
305,336 + CSW01_01520 0.76 +0.3
305,339 - CSW01_01520 0.76 +0.5
305,349 - CSW01_01520 0.76 -1.7
305,349 - CSW01_01520 0.76 -1.2
305,358 + CSW01_01520 0.77 -2.2
305,366 - CSW01_01520 0.77 +1.1
305,372 - CSW01_01520 0.77 -1.6
305,380 + CSW01_01520 0.78 -2.8
305,404 - CSW01_01520 0.79 +1.9
305,411 + CSW01_01520 0.79 +0.9
305,418 - CSW01_01520 0.80 +1.4
305,427 + CSW01_01520 0.80 +0.5
305,545 - CSW01_01520 0.86 +1.4
305,597 + CSW01_01520 0.89 -3.7
305,605 - CSW01_01520 0.89 +1.6
305,621 + -3.2
305,624 - -2.3
305,640 + +1.4
305,648 - +0.3
305,650 - +1.0
305,660 + +1.5
305,668 - -1.5
305,731 - -0.4
305,775 - +1.1
305,793 + -1.7
305,793 + -0.1
305,894 + -1.4
305,902 - -4.4
305,902 - +1.1
305,904 + +1.0
305,952 - -3.1
306,012 - -2.7
306,067 + +0.4
306,075 - -4.1
306,075 - -0.9
306,144 + CSW01_01525 0.21 -1.2
306,144 + CSW01_01525 0.21 -0.7
306,144 + CSW01_01525 0.21 -1.6
306,144 + CSW01_01525 0.21 +1.1
306,144 + CSW01_01525 0.21 +0.3
306,152 - CSW01_01525 0.22 -0.9
306,152 - CSW01_01525 0.22 +0.8
306,167 + CSW01_01525 0.24 -0.7
306,172 + CSW01_01525 0.25 -0.7
306,175 - CSW01_01525 0.26 -0.1
306,202 + CSW01_01525 0.30 +1.4
306,221 - CSW01_01525 0.33 +1.1
306,222 + CSW01_01525 0.33 +1.6
306,248 + CSW01_01525 0.37 +0.3
306,249 + CSW01_01525 0.37 +1.8
306,249 + CSW01_01525 0.37 -1.2
306,257 - CSW01_01525 0.39 +0.4
306,345 - CSW01_01525 0.53 -2.6
306,363 - CSW01_01525 0.56 +0.3
306,375 - CSW01_01525 0.57 -0.2
306,408 - CSW01_01525 0.63 +0.7
306,415 - CSW01_01525 0.64 -2.7
306,441 + CSW01_01525 0.68 +2.3
306,441 + CSW01_01525 0.68 -0.1
306,441 + CSW01_01525 0.68 +0.1
306,441 + CSW01_01525 0.68 +0.0
306,448 + CSW01_01525 0.69 +0.9
306,449 - CSW01_01525 0.69 -0.0
306,449 - CSW01_01525 0.69 +0.3
306,449 - CSW01_01525 0.69 -2.5
306,449 - CSW01_01525 0.69 +0.2
306,449 - CSW01_01525 0.69 -0.6
306,456 - CSW01_01525 0.70 +0.7
306,456 - CSW01_01525 0.70 -1.2
306,456 - CSW01_01525 0.70 -0.0
306,499 + CSW01_01525 0.77 +0.1
306,499 + CSW01_01525 0.77 -3.1
306,499 + CSW01_01525 0.77 -0.4
306,545 + CSW01_01525 0.84 -1.3
306,572 + CSW01_01525 0.89 -3.9
306,572 + CSW01_01525 0.89 -4.3
306,599 + -1.6
306,635 - +0.5
306,637 + -4.3
306,731 + +0.1
306,734 - +0.1
306,769 + +0.5
306,772 - -3.7
306,777 - -0.3
306,789 - +2.4
306,802 - -0.7
306,818 + +1.2
306,826 - +0.4
306,836 + CSW01_01530 0.10 -0.2
306,890 + CSW01_01530 0.13 +0.3
306,898 + CSW01_01530 0.14 -2.4
306,898 - CSW01_01530 0.14 +0.9
306,945 + CSW01_01530 0.16 +0.9
306,953 - CSW01_01530 0.17 +1.1
306,953 - CSW01_01530 0.17 +1.8
306,979 - CSW01_01530 0.18 +1.5
307,025 - CSW01_01530 0.21 -1.2
307,070 + CSW01_01530 0.23 -3.3
307,070 + CSW01_01530 0.23 -2.6
307,078 - CSW01_01530 0.23 -0.6
307,200 - CSW01_01530 0.30 +1.9
307,215 - CSW01_01530 0.31 +0.8
307,251 - CSW01_01530 0.33 +1.1
307,301 + CSW01_01530 0.36 -3.4
307,301 + CSW01_01530 0.36 -3.3
307,301 + CSW01_01530 0.36 +0.3
307,301 + CSW01_01530 0.36 -1.4
307,301 + CSW01_01530 0.36 +1.3
307,309 - CSW01_01530 0.36 +0.4
307,309 - CSW01_01530 0.36 +1.9
307,309 - CSW01_01530 0.36 -1.4
307,309 - CSW01_01530 0.36 -2.7
307,309 - CSW01_01530 0.36 +1.1
307,309 - CSW01_01530 0.36 +0.5
307,309 - CSW01_01530 0.36 +0.9
307,309 - CSW01_01530 0.36 +2.0
307,309 - CSW01_01530 0.36 -1.2
307,309 - CSW01_01530 0.36 -2.2
307,311 - CSW01_01530 0.36 -4.2
307,311 - CSW01_01530 0.36 +1.4
307,325 - CSW01_01530 0.37 +0.0
307,352 - CSW01_01530 0.38 +0.6
307,392 - CSW01_01530 0.41 -1.0
307,392 - CSW01_01530 0.41 +1.8
307,424 + CSW01_01530 0.42 -1.4
307,424 + CSW01_01530 0.42 +0.0
307,424 + CSW01_01530 0.42 -4.2
307,424 + CSW01_01530 0.42 -1.5
307,424 + CSW01_01530 0.42 -2.9
307,424 + CSW01_01530 0.42 +0.8
307,424 + CSW01_01530 0.42 +1.6
307,424 + CSW01_01530 0.42 +1.3
307,424 + CSW01_01530 0.42 +1.8
307,429 + CSW01_01530 0.43 +1.2
307,429 + CSW01_01530 0.43 -0.4
307,429 + CSW01_01530 0.43 +0.4
307,432 - CSW01_01530 0.43 -2.6
307,432 - CSW01_01530 0.43 -2.7
307,432 - CSW01_01530 0.43 -2.5
307,432 - CSW01_01530 0.43 +1.9
307,432 - CSW01_01530 0.43 +2.8
307,432 - CSW01_01530 0.43 -1.0
307,432 - CSW01_01530 0.43 +1.6
307,432 - CSW01_01530 0.43 +0.7
307,432 - CSW01_01530 0.43 +0.4
307,437 - CSW01_01530 0.43 +0.6
307,552 - CSW01_01530 0.49 -1.4
307,607 - CSW01_01530 0.52 -1.3
307,642 - CSW01_01530 0.54 -0.3

Or see this region's nucleotide sequence