Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01120

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01115 and CSW01_01120 are separated by 365 nucleotidesCSW01_01120 and CSW01_01125 are separated by 85 nucleotides CSW01_01115: CSW01_01115 - ribonuclease PH, at 217,589 to 218,305 _01115 CSW01_01120: CSW01_01120 - orotate phosphoribosyltransferase, at 218,671 to 219,312 _01120 CSW01_01125: CSW01_01125 - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 219,398 to 220,375 _01125 Position (kb) 218 219 220Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5 6at 217.672 kb on - strand, within CSW01_01115at 217.672 kb on - strand, within CSW01_01115at 217.672 kb on - strand, within CSW01_01115at 217.705 kb on - strand, within CSW01_01115at 217.705 kb on - strand, within CSW01_01115at 217.713 kb on + strand, within CSW01_01115at 217.735 kb on - strand, within CSW01_01115at 217.745 kb on + strand, within CSW01_01115at 217.745 kb on + strand, within CSW01_01115at 217.751 kb on + strand, within CSW01_01115at 217.751 kb on + strand, within CSW01_01115at 217.751 kb on + strand, within CSW01_01115at 217.751 kb on + strand, within CSW01_01115at 217.753 kb on - strand, within CSW01_01115at 217.757 kb on + strand, within CSW01_01115at 217.759 kb on - strand, within CSW01_01115at 217.759 kb on - strand, within CSW01_01115at 217.805 kb on + strand, within CSW01_01115at 217.825 kb on - strand, within CSW01_01115at 217.827 kb on + strand, within CSW01_01115at 217.878 kb on + strand, within CSW01_01115at 217.886 kb on - strand, within CSW01_01115at 217.916 kb on + strand, within CSW01_01115at 217.940 kb on - strand, within CSW01_01115at 217.989 kb on + strand, within CSW01_01115at 218.072 kb on + strand, within CSW01_01115at 218.096 kb on + strand, within CSW01_01115at 218.196 kb on + strand, within CSW01_01115at 218.198 kb on + strand, within CSW01_01115at 218.206 kb on - strand, within CSW01_01115at 218.217 kb on + strand, within CSW01_01115at 218.217 kb on + strand, within CSW01_01115at 218.225 kb on - strand, within CSW01_01115at 218.225 kb on - strand, within CSW01_01115at 218.225 kb on - strand, within CSW01_01115at 218.279 kb on + strandat 218.279 kb on + strandat 218.287 kb on - strandat 218.287 kb on - strandat 218.287 kb on - strandat 218.328 kb on - strandat 218.386 kb on + strandat 218.397 kb on + strandat 218.412 kb on + strandat 218.431 kb on - strandat 218.468 kb on + strandat 218.510 kb on + strandat 218.517 kb on - strandat 218.517 kb on - strandat 218.569 kb on - strandat 218.571 kb on + strandat 218.576 kb on - strandat 218.654 kb on - strandat 218.698 kb on + strandat 218.754 kb on + strand, within CSW01_01120at 218.777 kb on + strand, within CSW01_01120at 218.777 kb on + strand, within CSW01_01120at 218.777 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.836 kb on + strand, within CSW01_01120at 218.858 kb on + strand, within CSW01_01120at 218.879 kb on - strand, within CSW01_01120at 218.881 kb on + strand, within CSW01_01120at 218.943 kb on + strand, within CSW01_01120at 218.950 kb on + strand, within CSW01_01120at 218.951 kb on - strand, within CSW01_01120at 218.951 kb on - strand, within CSW01_01120at 218.951 kb on - strand, within CSW01_01120at 218.957 kb on + strand, within CSW01_01120at 218.973 kb on + strand, within CSW01_01120at 218.973 kb on + strand, within CSW01_01120at 219.015 kb on + strand, within CSW01_01120at 219.074 kb on + strand, within CSW01_01120at 219.083 kb on + strand, within CSW01_01120at 219.106 kb on + strand, within CSW01_01120at 219.106 kb on + strand, within CSW01_01120at 219.187 kb on + strand, within CSW01_01120at 219.202 kb on + strand, within CSW01_01120at 219.239 kb on + strand, within CSW01_01120at 219.239 kb on + strand, within CSW01_01120at 219.247 kb on - strand, within CSW01_01120at 219.247 kb on - strand, within CSW01_01120at 219.260 kb on + strandat 219.268 kb on - strandat 219.276 kb on - strandat 219.285 kb on + strandat 219.290 kb on + strandat 219.290 kb on + strandat 219.298 kb on - strandat 219.300 kb on + strandat 219.308 kb on - strandat 219.453 kb on + strandat 219.478 kb on - strandat 219.495 kb on + strandat 219.503 kb on - strand, within CSW01_01125at 219.503 kb on - strand, within CSW01_01125at 219.503 kb on - strand, within CSW01_01125at 219.503 kb on - strand, within CSW01_01125at 219.547 kb on - strand, within CSW01_01125at 219.571 kb on - strand, within CSW01_01125at 219.589 kb on + strand, within CSW01_01125at 219.597 kb on - strand, within CSW01_01125at 219.631 kb on - strand, within CSW01_01125at 219.650 kb on - strand, within CSW01_01125at 219.650 kb on - strand, within CSW01_01125at 219.653 kb on - strand, within CSW01_01125at 219.665 kb on + strand, within CSW01_01125at 219.679 kb on - strand, within CSW01_01125at 219.727 kb on - strand, within CSW01_01125at 219.753 kb on - strand, within CSW01_01125at 219.797 kb on - strand, within CSW01_01125at 219.875 kb on - strand, within CSW01_01125at 219.906 kb on - strand, within CSW01_01125at 219.942 kb on + strand, within CSW01_01125at 219.942 kb on + strand, within CSW01_01125at 219.950 kb on - strand, within CSW01_01125at 219.950 kb on - strand, within CSW01_01125at 219.950 kb on - strand, within CSW01_01125at 219.950 kb on - strand, within CSW01_01125at 219.950 kb on - strand, within CSW01_01125at 219.958 kb on - strand, within CSW01_01125at 219.983 kb on + strand, within CSW01_01125at 220.050 kb on + strand, within CSW01_01125at 220.052 kb on + strand, within CSW01_01125at 220.065 kb on + strand, within CSW01_01125at 220.082 kb on - strand, within CSW01_01125at 220.119 kb on - strand, within CSW01_01125at 220.158 kb on + strand, within CSW01_01125at 220.211 kb on + strand, within CSW01_01125at 220.219 kb on - strand, within CSW01_01125at 220.256 kb on + strand, within CSW01_01125at 220.264 kb on - strand, within CSW01_01125at 220.264 kb on - strand, within CSW01_01125at 220.264 kb on - strand, within CSW01_01125

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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217,672 - CSW01_01115 0.12 +0.9
217,672 - CSW01_01115 0.12 -0.9
217,672 - CSW01_01115 0.12 +0.8
217,705 - CSW01_01115 0.16 -0.4
217,705 - CSW01_01115 0.16 -3.2
217,713 + CSW01_01115 0.17 -0.1
217,735 - CSW01_01115 0.20 +2.0
217,745 + CSW01_01115 0.22 -3.7
217,745 + CSW01_01115 0.22 -3.1
217,751 + CSW01_01115 0.23 -1.8
217,751 + CSW01_01115 0.23 -0.4
217,751 + CSW01_01115 0.23 +1.2
217,751 + CSW01_01115 0.23 -1.4
217,753 - CSW01_01115 0.23 -2.9
217,757 + CSW01_01115 0.23 -3.3
217,759 - CSW01_01115 0.24 +1.2
217,759 - CSW01_01115 0.24 +0.7
217,805 + CSW01_01115 0.30 +0.9
217,825 - CSW01_01115 0.33 +0.4
217,827 + CSW01_01115 0.33 -0.6
217,878 + CSW01_01115 0.40 -3.9
217,886 - CSW01_01115 0.41 +0.1
217,916 + CSW01_01115 0.46 -3.0
217,940 - CSW01_01115 0.49 -1.1
217,989 + CSW01_01115 0.56 +0.7
218,072 + CSW01_01115 0.67 -1.6
218,096 + CSW01_01115 0.71 -3.1
218,196 + CSW01_01115 0.85 -3.7
218,198 + CSW01_01115 0.85 +0.6
218,206 - CSW01_01115 0.86 -1.4
218,217 + CSW01_01115 0.88 -0.7
218,217 + CSW01_01115 0.88 -0.7
218,225 - CSW01_01115 0.89 +0.6
218,225 - CSW01_01115 0.89 -1.6
218,225 - CSW01_01115 0.89 +1.4
218,279 + -0.4
218,279 + -2.9
218,287 - -1.8
218,287 - +0.6
218,287 - +1.5
218,328 - +0.6
218,386 + +1.1
218,397 + -0.1
218,412 + +0.8
218,431 - +0.8
218,468 + -0.9
218,510 + -0.6
218,517 - +0.2
218,517 - -3.9
218,569 - -3.5
218,571 + -2.5
218,576 - -2.1
218,654 - +0.7
218,698 + +1.4
218,754 + CSW01_01120 0.13 +0.2
218,777 + CSW01_01120 0.17 -1.4
218,777 + CSW01_01120 0.17 -0.3
218,777 + CSW01_01120 0.17 +1.3
218,787 + CSW01_01120 0.18 -2.7
218,787 + CSW01_01120 0.18 +5.8
218,787 + CSW01_01120 0.18 -0.2
218,787 + CSW01_01120 0.18 +1.1
218,787 + CSW01_01120 0.18 -0.0
218,787 + CSW01_01120 0.18 +1.5
218,787 + CSW01_01120 0.18 +0.5
218,787 + CSW01_01120 0.18 +0.9
218,787 + CSW01_01120 0.18 +1.4
218,787 + CSW01_01120 0.18 -2.9
218,787 + CSW01_01120 0.18 +1.5
218,787 + CSW01_01120 0.18 +1.1
218,787 + CSW01_01120 0.18 -1.4
218,787 + CSW01_01120 0.18 -1.6
218,787 + CSW01_01120 0.18 +0.7
218,787 + CSW01_01120 0.18 +0.7
218,787 + CSW01_01120 0.18 -0.1
218,787 + CSW01_01120 0.18 +2.5
218,787 + CSW01_01120 0.18 -0.2
218,787 + CSW01_01120 0.18 -0.2
218,787 + CSW01_01120 0.18 +1.0
218,787 + CSW01_01120 0.18 +1.4
218,787 + CSW01_01120 0.18 +1.5
218,787 + CSW01_01120 0.18 +0.1
218,787 + CSW01_01120 0.18 -2.7
218,787 + CSW01_01120 0.18 +0.9
218,787 + CSW01_01120 0.18 +1.3
218,787 + CSW01_01120 0.18 -2.3
218,787 + CSW01_01120 0.18 -0.4
218,787 + CSW01_01120 0.18 -0.8
218,787 + CSW01_01120 0.18 +0.4
218,795 - CSW01_01120 0.19 +1.4
218,795 - CSW01_01120 0.19 +1.5
218,795 - CSW01_01120 0.19 +1.7
218,795 - CSW01_01120 0.19 +0.5
218,795 - CSW01_01120 0.19 -0.0
218,795 - CSW01_01120 0.19 -3.7
218,795 - CSW01_01120 0.19 -0.1
218,795 - CSW01_01120 0.19 +1.1
218,795 - CSW01_01120 0.19 +0.9
218,795 - CSW01_01120 0.19 +0.6
218,795 - CSW01_01120 0.19 +0.8
218,795 - CSW01_01120 0.19 -1.5
218,795 - CSW01_01120 0.19 +0.5
218,795 - CSW01_01120 0.19 -0.1
218,795 - CSW01_01120 0.19 +1.0
218,795 - CSW01_01120 0.19 +0.2
218,836 + CSW01_01120 0.26 +1.5
218,858 + CSW01_01120 0.29 +0.1
218,879 - CSW01_01120 0.32 +0.3
218,881 + CSW01_01120 0.33 -4.0
218,943 + CSW01_01120 0.42 -2.8
218,950 + CSW01_01120 0.43 +0.6
218,951 - CSW01_01120 0.44 -4.2
218,951 - CSW01_01120 0.44 +0.3
218,951 - CSW01_01120 0.44 -1.6
218,957 + CSW01_01120 0.45 -2.9
218,973 + CSW01_01120 0.47 -3.4
218,973 + CSW01_01120 0.47 +1.6
219,015 + CSW01_01120 0.54 +1.1
219,074 + CSW01_01120 0.63 +0.8
219,083 + CSW01_01120 0.64 -1.8
219,106 + CSW01_01120 0.68 -0.8
219,106 + CSW01_01120 0.68 -2.5
219,187 + CSW01_01120 0.80 -0.5
219,202 + CSW01_01120 0.83 +1.0
219,239 + CSW01_01120 0.88 +0.1
219,239 + CSW01_01120 0.88 -0.5
219,247 - CSW01_01120 0.90 +3.0
219,247 - CSW01_01120 0.90 +0.9
219,260 + +0.2
219,268 - -1.4
219,276 - -0.6
219,285 + -0.8
219,290 + -0.0
219,290 + -1.7
219,298 - -1.5
219,300 + +0.5
219,308 - +1.4
219,453 + -1.1
219,478 - +0.5
219,495 + -3.8
219,503 - CSW01_01125 0.11 -0.1
219,503 - CSW01_01125 0.11 -2.9
219,503 - CSW01_01125 0.11 -5.1
219,503 - CSW01_01125 0.11 -2.5
219,547 - CSW01_01125 0.15 -0.0
219,571 - CSW01_01125 0.18 -3.2
219,589 + CSW01_01125 0.20 -2.2
219,597 - CSW01_01125 0.20 -3.1
219,631 - CSW01_01125 0.24 -2.0
219,650 - CSW01_01125 0.26 -3.8
219,650 - CSW01_01125 0.26 -2.7
219,653 - CSW01_01125 0.26 -1.0
219,665 + CSW01_01125 0.27 -4.4
219,679 - CSW01_01125 0.29 -3.5
219,727 - CSW01_01125 0.34 -3.7
219,753 - CSW01_01125 0.36 -2.3
219,797 - CSW01_01125 0.41 -3.2
219,875 - CSW01_01125 0.49 -3.8
219,906 - CSW01_01125 0.52 -1.9
219,942 + CSW01_01125 0.56 -1.5
219,942 + CSW01_01125 0.56 -2.8
219,950 - CSW01_01125 0.56 -0.2
219,950 - CSW01_01125 0.56 -2.1
219,950 - CSW01_01125 0.56 -2.8
219,950 - CSW01_01125 0.56 -3.1
219,950 - CSW01_01125 0.56 -2.9
219,958 - CSW01_01125 0.57 -2.3
219,983 + CSW01_01125 0.60 -2.7
220,050 + CSW01_01125 0.67 -1.6
220,052 + CSW01_01125 0.67 -2.3
220,065 + CSW01_01125 0.68 -3.3
220,082 - CSW01_01125 0.70 -3.1
220,119 - CSW01_01125 0.74 -1.0
220,158 + CSW01_01125 0.78 -2.3
220,211 + CSW01_01125 0.83 -1.2
220,219 - CSW01_01125 0.84 +0.5
220,256 + CSW01_01125 0.88 -2.1
220,264 - CSW01_01125 0.89 -3.7
220,264 - CSW01_01125 0.89 -3.5
220,264 - CSW01_01125 0.89 -1.3

Or see this region's nucleotide sequence