Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00600

Experiment: ICP1_phage_23.5_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_23.5_MOI_rep2
111,768	-		CSW01_00595	0.18	-1.2
111,856	+		CSW01_00595	0.25	-0.2
111,864	-		CSW01_00595	0.26	-3.2
111,866	+		CSW01_00595	0.26	+0.2
111,866	+		CSW01_00595	0.26	-3.0
111,866	+		CSW01_00595	0.26	-4.3
111,866	+		CSW01_00595	0.26	+0.1
111,874	-		CSW01_00595	0.26	-0.1
111,874	-		CSW01_00595	0.26	-1.6
111,874	-		CSW01_00595	0.26	-3.7
111,874	-		CSW01_00595	0.26	+0.5
111,874	-		CSW01_00595	0.26	+0.6
111,874	-		CSW01_00595	0.26	-0.8
111,874	-		CSW01_00595	0.26	+0.8
111,874	-		CSW01_00595	0.26	-1.1
111,907	+		CSW01_00595	0.29	+0.4
111,913	+		CSW01_00595	0.30	-3.1
111,915	+		CSW01_00595	0.30	-0.2
111,925	+		CSW01_00595	0.31	+0.4
111,925	+		CSW01_00595	0.31	-1.5
112,000	+		CSW01_00595	0.37	-0.7
112,036	-		CSW01_00595	0.40	-2.5
112,088	+		CSW01_00595	0.44	-0.5
112,098	+		CSW01_00595	0.45	+2.1
112,119	-		CSW01_00595	0.47	-0.4
112,119	-		CSW01_00595	0.47	+0.1
112,134	+		CSW01_00595	0.48	-2.7
112,137	+		CSW01_00595	0.48	+0.5
112,138	-		CSW01_00595	0.48	-0.7
112,142	-		CSW01_00595	0.49	+0.5
112,171	-		CSW01_00595	0.51	+2.2
112,173	-		CSW01_00595	0.51	-0.0
112,193	-		CSW01_00595	0.53	-4.2
112,203	-		CSW01_00595	0.54	-0.2
112,220	+		CSW01_00595	0.55	+1.0
112,227	+		CSW01_00595	0.56	-0.2
112,250	+		CSW01_00595	0.58	-0.9
112,328	+		CSW01_00595	0.64	-1.0
112,336	-		CSW01_00595	0.65	-4.7
112,336	-		CSW01_00595	0.65	+0.6
112,360	+		CSW01_00595	0.67	-0.2
112,401	-		CSW01_00595	0.70	-3.4
112,462	+		CSW01_00595	0.76	+0.3
112,470	-		CSW01_00595	0.76	-4.6
112,514	+		CSW01_00595	0.80	+0.9
112,522	-		CSW01_00595	0.81	-1.3
112,522	-		CSW01_00595	0.81	-1.0
112,523	+		CSW01_00595	0.81	+0.8
112,523	+		CSW01_00595	0.81	+0.4
112,523	+		CSW01_00595	0.81	-3.9
112,523	+		CSW01_00595	0.81	+1.1
112,523	+		CSW01_00595	0.81	-3.7
112,523	+		CSW01_00595	0.81	-3.8
112,531	-		CSW01_00595	0.81	+0.7
112,531	-		CSW01_00595	0.81	+0.9
112,531	-		CSW01_00595	0.81	+0.1
112,531	-		CSW01_00595	0.81	-0.3
112,531	-		CSW01_00595	0.81	+0.6
112,531	-		CSW01_00595	0.81	+0.9
112,577	+		CSW01_00595	0.85	-0.7
112,648	-				-2.6
112,670	+				+0.7
112,693	-				-4.4
112,720	-				-1.4
112,764	+				+0.2
112,790	+				-2.9
112,820	+				-1.1
112,820	+				-2.9
112,820	+				-2.8
112,845	+				+0.3
112,847	+				-1.6
112,847	+				-2.7
112,880	+		CSW01_00600	0.11	-0.6
112,880	+		CSW01_00600	0.11	-2.0
112,888	-		CSW01_00600	0.11	+2.0
112,898	+		CSW01_00600	0.12	-1.8
112,899	-		CSW01_00600	0.12	+1.3
112,899	-		CSW01_00600	0.12	-0.6
112,933	+		CSW01_00600	0.15	+0.1
112,933	+		CSW01_00600	0.15	-0.7
112,935	+		CSW01_00600	0.15	-3.7
112,943	-		CSW01_00600	0.16	-1.9
112,958	-		CSW01_00600	0.17	+0.4
112,963	-		CSW01_00600	0.18	-3.1
112,969	+		CSW01_00600	0.18	+1.8
112,989	+		CSW01_00600	0.20	-3.3
112,989	+		CSW01_00600	0.20	-0.7
112,997	-		CSW01_00600	0.20	-0.4
112,999	-		CSW01_00600	0.21	-1.0
113,006	-		CSW01_00600	0.21	-0.5
113,024	-		CSW01_00600	0.23	+0.1
113,024	-		CSW01_00600	0.23	-0.0
113,053	+		CSW01_00600	0.25	-3.8
113,053	+		CSW01_00600	0.25	-2.3
113,055	+		CSW01_00600	0.25	+0.4
113,063	-		CSW01_00600	0.26	+0.3
113,070	-		CSW01_00600	0.27	-1.5
113,108	-		CSW01_00600	0.30	-0.8
113,211	+		CSW01_00600	0.38	-1.2
113,211	+		CSW01_00600	0.38	-3.1
113,224	-		CSW01_00600	0.39	+2.0
113,237	-		CSW01_00600	0.41	-2.4
113,263	+		CSW01_00600	0.43	-2.1
113,263	+		CSW01_00600	0.43	-1.6
113,263	+		CSW01_00600	0.43	-2.0
113,263	+		CSW01_00600	0.43	-2.9
113,263	+		CSW01_00600	0.43	+0.3
113,263	+		CSW01_00600	0.43	-0.4
113,266	-		CSW01_00600	0.43	-4.5
113,266	-		CSW01_00600	0.43	-3.0
113,271	-		CSW01_00600	0.43	-3.4
113,271	-		CSW01_00600	0.43	-1.6
113,271	-		CSW01_00600	0.43	-1.4
113,310	-		CSW01_00600	0.47	-3.1
113,325	+		CSW01_00600	0.48	-4.6
113,325	+		CSW01_00600	0.48	-5.7
113,325	+		CSW01_00600	0.48	-0.6
113,333	-		CSW01_00600	0.48	-0.8
113,333	-		CSW01_00600	0.48	-2.6
113,333	-		CSW01_00600	0.48	-0.0
113,352	-		CSW01_00600	0.50	+0.1
113,359	+		CSW01_00600	0.51	-0.0
113,364	+		CSW01_00600	0.51	-3.2
113,364	+		CSW01_00600	0.51	+0.6
113,374	+		CSW01_00600	0.52	-0.5
113,374	+		CSW01_00600	0.52	-2.7
113,583	-		CSW01_00600	0.69	-4.4
113,640	-		CSW01_00600	0.74	+0.3
113,651	-		CSW01_00600	0.75	-2.6
113,664	+		CSW01_00600	0.76	-1.1
113,664	+		CSW01_00600	0.76	-0.1
113,672	-		CSW01_00600	0.77	+1.1
113,672	-		CSW01_00600	0.77	-2.6
113,711	+		CSW01_00600	0.80	-1.5
113,711	+		CSW01_00600	0.80	-1.9
113,719	-		CSW01_00600	0.81	-2.3
113,719	-		CSW01_00600	0.81	-1.5
113,746	+		CSW01_00600	0.83	-3.1
113,795	+		CSW01_00600	0.87	+1.2
113,803	-		CSW01_00600	0.88	+4.7
113,803	-		CSW01_00600	0.88	+0.1
113,803	-		CSW01_00600	0.88	-5.8
113,803	-		CSW01_00600	0.88	+0.5
113,813	+		CSW01_00600	0.89	+0.1
113,813	+		CSW01_00600	0.89	+0.8
113,813	+		CSW01_00600	0.89	+1.1
113,821	-		CSW01_00600	0.89	-3.4
113,821	-		CSW01_00600	0.89	-0.5
113,850	+				+1.8
113,858	-				-1.0
113,858	-				+0.2
113,860	-				-1.1
113,887	+				-1.1
113,910	-				+0.1
113,952	+				+1.0
113,952	+				-1.8
113,965	-				-2.9
113,987	-				+0.5
114,697	+				+1.3
114,714	-				+1.8
114,734	+				+0.1
114,755	-				-3.5
114,755	-				+0.3
114,755	-				-3.3
114,755	-				-2.1
114,761	-				+1.4
114,783	-				+0.0
114,783	-				-1.3
114,783	-				+0.3
114,783	-				+0.1
114,783	-				+0.4