Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00475

Experiment: ICP1_phage_23.5_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_00470 and CSW01_00475 are separated by 311 nucleotidesCSW01_00475 and CSW01_00480 are separated by 105 nucleotides CSW01_00470: CSW01_00470 - twin-arginine translocase subunit TatC, at 85,511 to 86,263 _00470 CSW01_00475: CSW01_00475 - cytochrome C biogenesis protein CcsA, at 86,575 to 87,576 _00475 CSW01_00480: CSW01_00480 - MATE family efflux transporter, at 87,682 to 89,046 _00480 Position (kb) 86 87 88Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 85.632 kb on + strand, within CSW01_00470at 85.706 kb on + strand, within CSW01_00470at 85.791 kb on - strand, within CSW01_00470at 85.898 kb on - strand, within CSW01_00470at 85.951 kb on - strand, within CSW01_00470at 85.951 kb on - strand, within CSW01_00470at 86.038 kb on - strand, within CSW01_00470at 86.047 kb on + strand, within CSW01_00470at 86.091 kb on + strand, within CSW01_00470at 86.175 kb on - strand, within CSW01_00470at 86.291 kb on + strandat 86.292 kb on - strandat 86.299 kb on - strandat 86.312 kb on - strandat 86.405 kb on + strandat 86.420 kb on - strandat 86.477 kb on + strandat 86.511 kb on + strandat 86.527 kb on - strandat 86.537 kb on - strandat 86.608 kb on - strandat 86.608 kb on - strandat 86.618 kb on - strandat 86.626 kb on + strandat 86.626 kb on + strandat 86.626 kb on + strandat 86.652 kb on + strandat 86.668 kb on - strandat 86.670 kb on + strandat 86.670 kb on + strandat 86.678 kb on - strand, within CSW01_00475at 86.753 kb on + strand, within CSW01_00475at 86.760 kb on - strand, within CSW01_00475at 86.760 kb on - strand, within CSW01_00475at 86.761 kb on - strand, within CSW01_00475at 86.762 kb on + strand, within CSW01_00475at 86.804 kb on + strand, within CSW01_00475at 86.821 kb on + strand, within CSW01_00475at 86.829 kb on - strand, within CSW01_00475at 86.839 kb on + strand, within CSW01_00475at 86.839 kb on + strand, within CSW01_00475at 86.847 kb on - strand, within CSW01_00475at 86.847 kb on - strand, within CSW01_00475at 86.865 kb on + strand, within CSW01_00475at 86.897 kb on - strand, within CSW01_00475at 86.897 kb on - strand, within CSW01_00475at 86.922 kb on - strand, within CSW01_00475at 86.978 kb on + strand, within CSW01_00475at 86.978 kb on + strand, within CSW01_00475at 86.978 kb on + strand, within CSW01_00475at 86.996 kb on - strand, within CSW01_00475at 87.162 kb on - strand, within CSW01_00475at 87.178 kb on - strand, within CSW01_00475at 87.206 kb on + strand, within CSW01_00475at 87.272 kb on - strand, within CSW01_00475at 87.276 kb on + strand, within CSW01_00475at 87.338 kb on + strand, within CSW01_00475at 87.346 kb on - strand, within CSW01_00475at 87.348 kb on + strand, within CSW01_00475at 87.465 kb on + strand, within CSW01_00475at 87.473 kb on - strand, within CSW01_00475at 87.473 kb on - strand, within CSW01_00475at 87.491 kb on + strandat 87.520 kb on - strandat 87.520 kb on - strandat 87.552 kb on + strandat 87.558 kb on + strandat 87.566 kb on - strandat 87.599 kb on - strandat 87.653 kb on - strandat 87.661 kb on - strandat 87.686 kb on + strandat 87.755 kb on - strandat 87.764 kb on + strandat 87.765 kb on + strandat 87.765 kb on + strandat 87.773 kb on - strandat 87.782 kb on + strandat 87.843 kb on - strand, within CSW01_00480at 87.892 kb on + strand, within CSW01_00480at 87.892 kb on + strand, within CSW01_00480at 87.902 kb on + strand, within CSW01_00480at 87.947 kb on + strand, within CSW01_00480at 87.991 kb on - strand, within CSW01_00480at 88.017 kb on + strand, within CSW01_00480at 88.054 kb on + strand, within CSW01_00480at 88.054 kb on + strand, within CSW01_00480at 88.110 kb on + strand, within CSW01_00480at 88.153 kb on + strand, within CSW01_00480at 88.195 kb on + strand, within CSW01_00480at 88.228 kb on + strand, within CSW01_00480at 88.266 kb on - strand, within CSW01_00480at 88.275 kb on + strand, within CSW01_00480at 88.277 kb on - strand, within CSW01_00480at 88.296 kb on - strand, within CSW01_00480at 88.328 kb on - strand, within CSW01_00480at 88.354 kb on + strand, within CSW01_00480at 88.399 kb on + strand, within CSW01_00480at 88.411 kb on + strand, within CSW01_00480at 88.419 kb on - strand, within CSW01_00480at 88.467 kb on + strand, within CSW01_00480at 88.467 kb on + strand, within CSW01_00480at 88.467 kb on + strand, within CSW01_00480at 88.520 kb on - strand, within CSW01_00480at 88.576 kb on - strand, within CSW01_00480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
remove
85,632 + CSW01_00470 0.16 -0.6
85,706 + CSW01_00470 0.26 -1.2
85,791 - CSW01_00470 0.37 +0.3
85,898 - CSW01_00470 0.51 -2.4
85,951 - CSW01_00470 0.58 +0.0
85,951 - CSW01_00470 0.58 -1.1
86,038 - CSW01_00470 0.70 +0.3
86,047 + CSW01_00470 0.71 -0.5
86,091 + CSW01_00470 0.77 +0.7
86,175 - CSW01_00470 0.88 -3.8
86,291 + +0.9
86,292 - +1.1
86,299 - -0.1
86,312 - +0.9
86,405 + -0.5
86,420 - -2.8
86,477 + -0.7
86,511 + +0.7
86,527 - -2.5
86,537 - -2.0
86,608 - +0.1
86,608 - -0.5
86,618 - -3.5
86,626 + -4.2
86,626 + -0.6
86,626 + -3.4
86,652 + +2.1
86,668 - -0.9
86,670 + +0.2
86,670 + +1.1
86,678 - CSW01_00475 0.10 -3.6
86,753 + CSW01_00475 0.18 +0.4
86,760 - CSW01_00475 0.18 -1.7
86,760 - CSW01_00475 0.18 +0.4
86,761 - CSW01_00475 0.19 +0.1
86,762 + CSW01_00475 0.19 -3.8
86,804 + CSW01_00475 0.23 +0.9
86,821 + CSW01_00475 0.25 -0.3
86,829 - CSW01_00475 0.25 +0.4
86,839 + CSW01_00475 0.26 +0.1
86,839 + CSW01_00475 0.26 -0.9
86,847 - CSW01_00475 0.27 -2.2
86,847 - CSW01_00475 0.27 +0.0
86,865 + CSW01_00475 0.29 +1.1
86,897 - CSW01_00475 0.32 -3.2
86,897 - CSW01_00475 0.32 -0.7
86,922 - CSW01_00475 0.35 -0.6
86,978 + CSW01_00475 0.40 -0.0
86,978 + CSW01_00475 0.40 +0.7
86,978 + CSW01_00475 0.40 -2.0
86,996 - CSW01_00475 0.42 -2.2
87,162 - CSW01_00475 0.59 +1.6
87,178 - CSW01_00475 0.60 -0.5
87,206 + CSW01_00475 0.63 -2.2
87,272 - CSW01_00475 0.70 +0.1
87,276 + CSW01_00475 0.70 -3.8
87,338 + CSW01_00475 0.76 -0.5
87,346 - CSW01_00475 0.77 -3.4
87,348 + CSW01_00475 0.77 +0.1
87,465 + CSW01_00475 0.89 +0.4
87,473 - CSW01_00475 0.90 -0.1
87,473 - CSW01_00475 0.90 +0.7
87,491 + +1.6
87,520 - +0.7
87,520 - -2.0
87,552 + -2.4
87,558 + +0.7
87,566 - +0.4
87,599 - +0.9
87,653 - -2.3
87,661 - +1.5
87,686 + -1.0
87,755 - +0.6
87,764 + -0.8
87,765 + -0.2
87,765 + -3.3
87,773 - +0.7
87,782 + -0.4
87,843 - CSW01_00480 0.12 -2.5
87,892 + CSW01_00480 0.15 +1.3
87,892 + CSW01_00480 0.15 -0.5
87,902 + CSW01_00480 0.16 -1.8
87,947 + CSW01_00480 0.19 -0.2
87,991 - CSW01_00480 0.23 -2.5
88,017 + CSW01_00480 0.25 +1.9
88,054 + CSW01_00480 0.27 +0.5
88,054 + CSW01_00480 0.27 +1.2
88,110 + CSW01_00480 0.31 +1.3
88,153 + CSW01_00480 0.35 -0.3
88,195 + CSW01_00480 0.38 -3.4
88,228 + CSW01_00480 0.40 +0.6
88,266 - CSW01_00480 0.43 -4.2
88,275 + CSW01_00480 0.43 -0.1
88,277 - CSW01_00480 0.44 -2.2
88,296 - CSW01_00480 0.45 +0.3
88,328 - CSW01_00480 0.47 +0.3
88,354 + CSW01_00480 0.49 -0.3
88,399 + CSW01_00480 0.53 -0.5
88,411 + CSW01_00480 0.53 -1.5
88,419 - CSW01_00480 0.54 -3.8
88,467 + CSW01_00480 0.58 -0.4
88,467 + CSW01_00480 0.58 +0.4
88,467 + CSW01_00480 0.58 -2.2
88,520 - CSW01_00480 0.61 -0.0
88,576 - CSW01_00480 0.65 +0.6

Or see this region's nucleotide sequence