Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00295

Experiment: ICP1_phage_23.5_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00280 and CSW01_00285 overlap by 4 nucleotidesCSW01_00285 and CSW01_00290 overlap by 20 nucleotidesCSW01_00290 and CSW01_00295 are separated by 185 nucleotidesCSW01_00295 and CSW01_00300 are separated by 177 nucleotides CSW01_00280: CSW01_00280 - shikimate dehydrogenase, at 51,668 to 52,504 _00280 CSW01_00285: CSW01_00285 - DUF1488 domain-containing protein, at 52,501 to 52,776 _00285 CSW01_00290: CSW01_00290 - gamma carbonic anhydrase family protein, at 52,757 to 53,311 _00290 CSW01_00295: CSW01_00295 - hypothetical protein, at 53,497 to 53,637 _00295 CSW01_00300: CSW01_00300 - 16S ribosomal RNA, at 53,815 to 55,364 _00300 Position (kb) 53 54Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 52.535 kb on + strand, within CSW01_00285at 52.543 kb on - strand, within CSW01_00285at 52.543 kb on - strand, within CSW01_00285at 52.558 kb on + strand, within CSW01_00285at 52.573 kb on + strand, within CSW01_00285at 52.583 kb on - strand, within CSW01_00285at 52.626 kb on + strand, within CSW01_00285at 52.633 kb on + strand, within CSW01_00285at 52.747 kb on - strand, within CSW01_00285at 52.770 kb on + strandat 52.770 kb on + strandat 52.770 kb on + strandat 52.778 kb on - strandat 52.778 kb on - strandat 52.778 kb on - strandat 52.780 kb on + strandat 52.794 kb on + strandat 52.794 kb on + strandat 52.802 kb on - strandat 52.802 kb on - strandat 52.802 kb on - strandat 52.802 kb on - strandat 52.812 kb on - strandat 52.843 kb on + strand, within CSW01_00290at 52.851 kb on - strand, within CSW01_00290at 52.876 kb on + strand, within CSW01_00290at 52.921 kb on + strand, within CSW01_00290at 52.921 kb on + strand, within CSW01_00290at 52.921 kb on + strand, within CSW01_00290at 52.921 kb on + strand, within CSW01_00290at 52.929 kb on - strand, within CSW01_00290at 52.929 kb on - strand, within CSW01_00290at 52.929 kb on - strand, within CSW01_00290at 52.929 kb on - strand, within CSW01_00290at 52.929 kb on - strand, within CSW01_00290at 52.929 kb on - strand, within CSW01_00290at 52.978 kb on - strand, within CSW01_00290at 52.978 kb on - strand, within CSW01_00290at 52.985 kb on + strand, within CSW01_00290at 52.985 kb on + strand, within CSW01_00290at 52.986 kb on - strand, within CSW01_00290at 53.027 kb on + strand, within CSW01_00290at 53.029 kb on + strand, within CSW01_00290at 53.029 kb on + strand, within CSW01_00290at 53.029 kb on + strand, within CSW01_00290at 53.029 kb on + strand, within CSW01_00290at 53.029 kb on + strand, within CSW01_00290at 53.034 kb on + strand, within CSW01_00290at 53.035 kb on + strand, within CSW01_00290at 53.035 kb on + strand, within CSW01_00290at 53.036 kb on - strand, within CSW01_00290at 53.036 kb on - strand, within CSW01_00290at 53.037 kb on - strand, within CSW01_00290at 53.037 kb on - strand, within CSW01_00290at 53.037 kb on - strand, within CSW01_00290at 53.041 kb on + strand, within CSW01_00290at 53.043 kb on - strand, within CSW01_00290at 53.048 kb on + strand, within CSW01_00290at 53.048 kb on + strand, within CSW01_00290at 53.056 kb on - strand, within CSW01_00290at 53.106 kb on + strand, within CSW01_00290at 53.106 kb on + strand, within CSW01_00290at 53.114 kb on - strand, within CSW01_00290at 53.116 kb on + strand, within CSW01_00290at 53.116 kb on + strand, within CSW01_00290at 53.124 kb on - strand, within CSW01_00290at 53.124 kb on - strand, within CSW01_00290at 53.126 kb on + strand, within CSW01_00290at 53.141 kb on + strand, within CSW01_00290at 53.161 kb on + strand, within CSW01_00290at 53.166 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.223 kb on - strand, within CSW01_00290at 53.223 kb on - strand, within CSW01_00290at 53.223 kb on - strand, within CSW01_00290at 53.223 kb on - strand, within CSW01_00290at 53.223 kb on - strand, within CSW01_00290at 53.223 kb on - strand, within CSW01_00290at 53.223 kb on - strand, within CSW01_00290at 53.233 kb on + strand, within CSW01_00290at 53.236 kb on + strand, within CSW01_00290at 53.238 kb on + strand, within CSW01_00290at 53.241 kb on - strand, within CSW01_00290at 53.241 kb on - strand, within CSW01_00290at 53.244 kb on - strand, within CSW01_00290at 53.250 kb on + strand, within CSW01_00290at 53.250 kb on + strand, within CSW01_00290at 53.250 kb on + strand, within CSW01_00290at 53.258 kb on - strandat 53.258 kb on - strandat 53.258 kb on - strandat 53.263 kb on + strandat 53.270 kb on - strandat 53.281 kb on - strandat 53.296 kb on + strandat 53.296 kb on + strandat 53.304 kb on - strandat 53.331 kb on + strandat 53.346 kb on - strandat 53.351 kb on - strandat 53.376 kb on - strandat 53.378 kb on + strandat 53.378 kb on + strandat 53.378 kb on + strandat 53.378 kb on + strandat 53.378 kb on + strandat 53.378 kb on + strandat 53.386 kb on - strandat 53.386 kb on - strandat 53.520 kb on - strand, within CSW01_00295at 53.520 kb on - strand, within CSW01_00295at 53.520 kb on - strand, within CSW01_00295

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep2
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52,535 + CSW01_00285 0.12 +1.0
52,543 - CSW01_00285 0.15 +0.1
52,543 - CSW01_00285 0.15 +1.0
52,558 + CSW01_00285 0.21 -3.2
52,573 + CSW01_00285 0.26 -4.1
52,583 - CSW01_00285 0.30 +0.7
52,626 + CSW01_00285 0.45 -0.5
52,633 + CSW01_00285 0.48 +0.5
52,747 - CSW01_00285 0.89 -0.0
52,770 + +1.3
52,770 + -4.0
52,770 + -4.2
52,778 - +0.9
52,778 - +1.1
52,778 - +0.1
52,780 + +0.7
52,794 + +1.4
52,794 + +0.9
52,802 - -0.1
52,802 - -3.5
52,802 - -1.1
52,802 - -1.2
52,812 - +1.2
52,843 + CSW01_00290 0.15 +0.1
52,851 - CSW01_00290 0.17 -0.3
52,876 + CSW01_00290 0.21 +1.2
52,921 + CSW01_00290 0.30 -2.1
52,921 + CSW01_00290 0.30 -4.1
52,921 + CSW01_00290 0.30 +0.3
52,921 + CSW01_00290 0.30 -3.2
52,929 - CSW01_00290 0.31 +0.5
52,929 - CSW01_00290 0.31 +0.7
52,929 - CSW01_00290 0.31 -0.0
52,929 - CSW01_00290 0.31 -4.2
52,929 - CSW01_00290 0.31 -3.4
52,929 - CSW01_00290 0.31 -0.7
52,978 - CSW01_00290 0.40 +0.6
52,978 - CSW01_00290 0.40 -0.9
52,985 + CSW01_00290 0.41 +1.0
52,985 + CSW01_00290 0.41 +0.6
52,986 - CSW01_00290 0.41 -1.1
53,027 + CSW01_00290 0.49 -0.2
53,029 + CSW01_00290 0.49 -0.6
53,029 + CSW01_00290 0.49 -0.2
53,029 + CSW01_00290 0.49 -1.7
53,029 + CSW01_00290 0.49 +1.8
53,029 + CSW01_00290 0.49 +0.2
53,034 + CSW01_00290 0.50 +1.7
53,035 + CSW01_00290 0.50 -3.1
53,035 + CSW01_00290 0.50 +0.9
53,036 - CSW01_00290 0.50 +0.2
53,036 - CSW01_00290 0.50 -2.8
53,037 - CSW01_00290 0.50 -1.4
53,037 - CSW01_00290 0.50 +0.6
53,037 - CSW01_00290 0.50 +0.7
53,041 + CSW01_00290 0.51 +0.0
53,043 - CSW01_00290 0.52 -2.7
53,048 + CSW01_00290 0.52 -1.5
53,048 + CSW01_00290 0.52 +0.4
53,056 - CSW01_00290 0.54 +0.3
53,106 + CSW01_00290 0.63 +1.0
53,106 + CSW01_00290 0.63 +0.7
53,114 - CSW01_00290 0.64 -0.6
53,116 + CSW01_00290 0.65 +0.1
53,116 + CSW01_00290 0.65 +0.1
53,124 - CSW01_00290 0.66 -2.3
53,124 - CSW01_00290 0.66 -2.1
53,126 + CSW01_00290 0.66 -4.1
53,141 + CSW01_00290 0.69 -3.8
53,161 + CSW01_00290 0.73 +0.7
53,166 + CSW01_00290 0.74 +0.8
53,215 + CSW01_00290 0.83 +0.1
53,215 + CSW01_00290 0.83 +0.1
53,215 + CSW01_00290 0.83 +0.3
53,215 + CSW01_00290 0.83 -1.6
53,215 + CSW01_00290 0.83 -2.1
53,215 + CSW01_00290 0.83 -2.3
53,215 + CSW01_00290 0.83 -2.9
53,215 + CSW01_00290 0.83 +2.8
53,215 + CSW01_00290 0.83 -1.3
53,215 + CSW01_00290 0.83 -0.7
53,215 + CSW01_00290 0.83 -2.7
53,215 + CSW01_00290 0.83 +0.7
53,215 + CSW01_00290 0.83 -4.0
53,215 + CSW01_00290 0.83 -0.8
53,223 - CSW01_00290 0.84 +0.1
53,223 - CSW01_00290 0.84 -0.9
53,223 - CSW01_00290 0.84 -0.6
53,223 - CSW01_00290 0.84 -2.0
53,223 - CSW01_00290 0.84 -1.2
53,223 - CSW01_00290 0.84 -3.3
53,223 - CSW01_00290 0.84 -3.8
53,233 + CSW01_00290 0.86 +2.1
53,236 + CSW01_00290 0.86 -1.8
53,238 + CSW01_00290 0.87 +2.9
53,241 - CSW01_00290 0.87 +0.9
53,241 - CSW01_00290 0.87 -0.1
53,244 - CSW01_00290 0.88 -2.3
53,250 + CSW01_00290 0.89 -1.4
53,250 + CSW01_00290 0.89 -1.1
53,250 + CSW01_00290 0.89 +1.0
53,258 - +1.6
53,258 - +0.6
53,258 - -0.1
53,263 + +0.9
53,270 - +0.7
53,281 - -0.3
53,296 + +0.4
53,296 + +0.6
53,304 - +0.5
53,331 + +0.6
53,346 - -2.4
53,351 - +0.6
53,376 - -2.1
53,378 + -0.6
53,378 + -1.2
53,378 + +0.2
53,378 + +0.2
53,378 + +1.2
53,378 + +0.6
53,386 - -1.0
53,386 - +0.6
53,520 - CSW01_00295 0.16 +0.7
53,520 - CSW01_00295 0.16 +1.6
53,520 - CSW01_00295 0.16 -0.8

Or see this region's nucleotide sequence