Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_33

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_31 and Ac3H11_32 are separated by 52 nucleotidesAc3H11_32 and Ac3H11_33 are separated by 27 nucleotidesAc3H11_33 and Ac3H11_34 are separated by 148 nucleotides Ac3H11_31 - FIG074102: hypothetical protein, at 27,840 to 28,661 _31 Ac3H11_32 - Serine esterase, at 28,714 to 29,364 _32 Ac3H11_33 - Transcriptional regulator, AsnC family, at 29,392 to 29,859 _33 Ac3H11_34 - Methionine gamma-lyase (EC 4.4.1.11), at 30,008 to 31,312 _34 Position (kb) 29 30Strain fitness (log2 ratio) -2 -1 0 1 2at 28.419 kb on + strand, within Ac3H11_31at 28.419 kb on + strand, within Ac3H11_31at 28.419 kb on + strand, within Ac3H11_31at 28.419 kb on + strand, within Ac3H11_31at 28.419 kb on + strand, within Ac3H11_31at 28.419 kb on + strand, within Ac3H11_31at 28.420 kb on - strand, within Ac3H11_31at 28.420 kb on - strand, within Ac3H11_31at 28.420 kb on - strand, within Ac3H11_31at 28.420 kb on - strand, within Ac3H11_31at 28.420 kb on - strand, within Ac3H11_31at 28.488 kb on + strand, within Ac3H11_31at 28.488 kb on + strand, within Ac3H11_31at 28.488 kb on + strand, within Ac3H11_31at 28.489 kb on - strand, within Ac3H11_31at 28.593 kb on + strandat 28.593 kb on + strandat 28.593 kb on + strandat 28.593 kb on + strandat 28.593 kb on + strandat 28.593 kb on + strandat 28.593 kb on + strandat 28.593 kb on + strandat 28.594 kb on - strandat 28.594 kb on - strandat 28.594 kb on - strandat 28.594 kb on - strandat 28.594 kb on - strandat 28.594 kb on - strandat 28.594 kb on - strandat 28.594 kb on - strandat 28.614 kb on + strandat 28.614 kb on + strandat 28.614 kb on + strandat 28.614 kb on + strandat 28.614 kb on + strandat 28.614 kb on + strandat 28.614 kb on + strandat 28.614 kb on + strandat 28.614 kb on + strandat 28.614 kb on + strandat 28.614 kb on + strandat 28.614 kb on + strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.615 kb on - strandat 28.686 kb on - strandat 28.686 kb on - strandat 28.713 kb on + strandat 28.714 kb on - strandat 29.287 kb on + strand, within Ac3H11_32at 29.287 kb on + strand, within Ac3H11_32at 29.287 kb on + strand, within Ac3H11_32at 29.287 kb on + strand, within Ac3H11_32at 29.288 kb on - strand, within Ac3H11_32at 29.473 kb on + strand, within Ac3H11_33at 29.473 kb on + strand, within Ac3H11_33at 29.473 kb on + strand, within Ac3H11_33at 29.473 kb on + strand, within Ac3H11_33at 29.473 kb on + strand, within Ac3H11_33at 29.473 kb on + strand, within Ac3H11_33at 29.473 kb on + strand, within Ac3H11_33at 29.473 kb on + strand, within Ac3H11_33at 29.473 kb on + strand, within Ac3H11_33at 29.473 kb on + strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.474 kb on - strand, within Ac3H11_33at 29.489 kb on + strand, within Ac3H11_33at 29.489 kb on + strand, within Ac3H11_33at 29.489 kb on + strand, within Ac3H11_33at 29.490 kb on - strand, within Ac3H11_33at 29.490 kb on - strand, within Ac3H11_33at 29.490 kb on - strand, within Ac3H11_33at 29.490 kb on - strand, within Ac3H11_33at 29.534 kb on + strand, within Ac3H11_33at 29.534 kb on + strand, within Ac3H11_33at 29.534 kb on + strand, within Ac3H11_33at 29.534 kb on + strand, within Ac3H11_33at 29.534 kb on + strand, within Ac3H11_33at 29.534 kb on + strand, within Ac3H11_33at 29.535 kb on - strand, within Ac3H11_33at 29.540 kb on + strand, within Ac3H11_33at 29.541 kb on - strand, within Ac3H11_33at 29.859 kb on + strandat 29.859 kb on + strandat 29.859 kb on + strandat 29.859 kb on + strandat 29.859 kb on + strandat 29.859 kb on + strandat 29.859 kb on + strandat 29.859 kb on + strandat 29.859 kb on + strandat 29.859 kb on + strandat 29.860 kb on - strandat 29.860 kb on - strandat 29.860 kb on - strandat 30.071 kb on + strandat 30.072 kb on - strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.128 kb on + strandat 30.129 kb on - strandat 30.129 kb on - strandat 30.129 kb on - strandat 30.129 kb on - strandat 30.129 kb on - strandat 30.129 kb on - strandat 30.129 kb on - strandat 30.129 kb on - strandat 30.129 kb on - strandat 30.129 kb on - strandat 30.129 kb on - strandat 30.129 kb on - strandat 30.129 kb on - strandat 30.129 kb on - strandat 30.149 kb on + strand, within Ac3H11_34at 30.150 kb on - strand, within Ac3H11_34at 30.185 kb on + strand, within Ac3H11_34at 30.185 kb on + strand, within Ac3H11_34at 30.185 kb on + strand, within Ac3H11_34at 30.185 kb on + strand, within Ac3H11_34at 30.185 kb on + strand, within Ac3H11_34at 30.185 kb on + strand, within Ac3H11_34at 30.186 kb on - strand, within Ac3H11_34at 30.186 kb on - strand, within Ac3H11_34at 30.191 kb on + strand, within Ac3H11_34at 30.191 kb on + strand, within Ac3H11_34at 30.191 kb on + strand, within Ac3H11_34at 30.191 kb on + strand, within Ac3H11_34at 30.191 kb on + strand, within Ac3H11_34at 30.191 kb on + strand, within Ac3H11_34at 30.191 kb on + strand, within Ac3H11_34at 30.191 kb on + strand, within Ac3H11_34at 30.191 kb on + strand, within Ac3H11_34at 30.191 kb on + strand, within Ac3H11_34at 30.191 kb on + strand, within Ac3H11_34at 30.191 kb on + strand, within Ac3H11_34at 30.191 kb on + strand, within Ac3H11_34at 30.191 kb on + strand, within Ac3H11_34at 30.192 kb on - strand, within Ac3H11_34at 30.192 kb on - strand, within Ac3H11_34at 30.192 kb on - strand, within Ac3H11_34at 30.192 kb on - strand, within Ac3H11_34at 30.192 kb on - strand, within Ac3H11_34at 30.192 kb on - strand, within Ac3H11_34at 30.192 kb on - strand, within Ac3H11_34at 30.192 kb on - strand, within Ac3H11_34at 30.192 kb on - strand, within Ac3H11_34at 30.192 kb on - strand, within Ac3H11_34at 30.192 kb on - strand, within Ac3H11_34at 30.356 kb on + strand, within Ac3H11_34at 30.356 kb on + strand, within Ac3H11_34at 30.356 kb on + strand, within Ac3H11_34at 30.356 kb on + strand, within Ac3H11_34at 30.357 kb on - strand, within Ac3H11_34at 30.479 kb on + strand, within Ac3H11_34at 30.480 kb on - strand, within Ac3H11_34at 30.574 kb on + strand, within Ac3H11_34at 30.575 kb on - strand, within Ac3H11_34at 30.581 kb on + strand, within Ac3H11_34at 30.581 kb on + strand, within Ac3H11_34at 30.581 kb on + strand, within Ac3H11_34at 30.581 kb on + strand, within Ac3H11_34at 30.581 kb on + strand, within Ac3H11_34at 30.581 kb on + strand, within Ac3H11_34at 30.581 kb on + strand, within Ac3H11_34at 30.581 kb on + strand, within Ac3H11_34at 30.581 kb on + strand, within Ac3H11_34at 30.582 kb on - strand, within Ac3H11_34at 30.582 kb on - strand, within Ac3H11_34at 30.582 kb on - strand, within Ac3H11_34at 30.582 kb on - strand, within Ac3H11_34at 30.582 kb on - strand, within Ac3H11_34at 30.582 kb on - strand, within Ac3H11_34at 30.582 kb on - strand, within Ac3H11_34at 30.593 kb on + strand, within Ac3H11_34at 30.594 kb on - strand, within Ac3H11_34at 30.594 kb on - strand, within Ac3H11_34at 30.594 kb on - strand, within Ac3H11_34at 30.594 kb on - strand, within Ac3H11_34at 30.594 kb on - strand, within Ac3H11_34at 30.650 kb on + strand, within Ac3H11_34at 30.650 kb on + strand, within Ac3H11_34at 30.650 kb on + strand, within Ac3H11_34at 30.650 kb on + strand, within Ac3H11_34at 30.650 kb on + strand, within Ac3H11_34at 30.650 kb on + strand, within Ac3H11_34at 30.650 kb on + strand, within Ac3H11_34at 30.650 kb on + strand, within Ac3H11_34at 30.650 kb on + strand, within Ac3H11_34at 30.650 kb on + strand, within Ac3H11_34at 30.650 kb on + strand, within Ac3H11_34at 30.651 kb on - strand, within Ac3H11_34at 30.651 kb on - strand, within Ac3H11_34at 30.651 kb on - strand, within Ac3H11_34at 30.728 kb on + strand, within Ac3H11_34at 30.728 kb on + strand, within Ac3H11_34at 30.729 kb on - strand, within Ac3H11_34

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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28,419 + Ac3H11_31 0.70 -0.4
28,419 + Ac3H11_31 0.70 -0.5
28,419 + Ac3H11_31 0.70 +0.1
28,419 + Ac3H11_31 0.70 -0.0
28,419 + Ac3H11_31 0.70 +0.1
28,419 + Ac3H11_31 0.70 -0.2
28,420 - Ac3H11_31 0.71 -1.4
28,420 - Ac3H11_31 0.71 -1.5
28,420 - Ac3H11_31 0.71 -0.3
28,420 - Ac3H11_31 0.71 -0.5
28,420 - Ac3H11_31 0.71 +0.4
28,488 + Ac3H11_31 0.79 -1.3
28,488 + Ac3H11_31 0.79 -0.4
28,488 + Ac3H11_31 0.79 +0.3
28,489 - Ac3H11_31 0.79 -2.7
28,593 + -0.2
28,593 + -0.8
28,593 + +0.0
28,593 + -0.3
28,593 + +0.1
28,593 + -0.4
28,593 + -0.5
28,593 + -1.6
28,594 - +0.1
28,594 - +1.2
28,594 - -0.2
28,594 - +0.2
28,594 - +0.2
28,594 - -0.3
28,594 - -1.1
28,594 - +0.4
28,614 + -1.1
28,614 + +0.1
28,614 + -1.2
28,614 + -1.5
28,614 + -0.4
28,614 + +1.0
28,614 + -0.8
28,614 + -0.5
28,614 + -0.0
28,614 + -0.1
28,614 + -2.4
28,614 + -0.3
28,615 - -0.3
28,615 - +0.7
28,615 - +2.1
28,615 - -0.4
28,615 - -0.2
28,615 - +0.5
28,615 - +1.2
28,615 - -0.1
28,615 - -0.8
28,615 - +0.6
28,615 - -1.6
28,615 - +2.1
28,615 - -0.2
28,615 - -0.6
28,615 - +0.0
28,615 - -0.4
28,615 - -0.2
28,615 - -0.5
28,686 - +0.3
28,686 - +0.6
28,713 + -0.5
28,714 - -0.4
29,287 + Ac3H11_32 0.88 +0.7
29,287 + Ac3H11_32 0.88 -0.1
29,287 + Ac3H11_32 0.88 -0.9
29,287 + Ac3H11_32 0.88 -0.5
29,288 - Ac3H11_32 0.88 -0.3
29,473 + Ac3H11_33 0.17 -0.5
29,473 + Ac3H11_33 0.17 +0.7
29,473 + Ac3H11_33 0.17 +0.7
29,473 + Ac3H11_33 0.17 +0.4
29,473 + Ac3H11_33 0.17 -0.2
29,473 + Ac3H11_33 0.17 +0.4
29,473 + Ac3H11_33 0.17 +1.1
29,473 + Ac3H11_33 0.17 +1.2
29,473 + Ac3H11_33 0.17 +0.2
29,473 + Ac3H11_33 0.17 +0.4
29,474 - Ac3H11_33 0.18 +0.4
29,474 - Ac3H11_33 0.18 -0.3
29,474 - Ac3H11_33 0.18 +0.3
29,474 - Ac3H11_33 0.18 -2.0
29,474 - Ac3H11_33 0.18 -0.2
29,474 - Ac3H11_33 0.18 -0.6
29,474 - Ac3H11_33 0.18 -0.1
29,474 - Ac3H11_33 0.18 -0.5
29,474 - Ac3H11_33 0.18 +0.6
29,474 - Ac3H11_33 0.18 +0.2
29,474 - Ac3H11_33 0.18 +0.5
29,474 - Ac3H11_33 0.18 +0.1
29,474 - Ac3H11_33 0.18 +0.7
29,474 - Ac3H11_33 0.18 +0.5
29,474 - Ac3H11_33 0.18 -0.4
29,474 - Ac3H11_33 0.18 -1.0
29,474 - Ac3H11_33 0.18 +0.7
29,474 - Ac3H11_33 0.18 +0.1
29,474 - Ac3H11_33 0.18 -0.6
29,474 - Ac3H11_33 0.18 -0.2
29,489 + Ac3H11_33 0.21 -1.5
29,489 + Ac3H11_33 0.21 +0.4
29,489 + Ac3H11_33 0.21 +0.2
29,490 - Ac3H11_33 0.21 -0.1
29,490 - Ac3H11_33 0.21 +0.6
29,490 - Ac3H11_33 0.21 +1.0
29,490 - Ac3H11_33 0.21 +0.6
29,534 + Ac3H11_33 0.30 +0.1
29,534 + Ac3H11_33 0.30 +0.0
29,534 + Ac3H11_33 0.30 +0.7
29,534 + Ac3H11_33 0.30 +0.4
29,534 + Ac3H11_33 0.30 +0.5
29,534 + Ac3H11_33 0.30 +0.5
29,535 - Ac3H11_33 0.31 -1.2
29,540 + Ac3H11_33 0.32 -0.5
29,541 - Ac3H11_33 0.32 +0.3
29,859 + +0.3
29,859 + +0.2
29,859 + +1.1
29,859 + -0.5
29,859 + +0.7
29,859 + -1.1
29,859 + -0.4
29,859 + -0.0
29,859 + -2.5
29,859 + +0.9
29,860 - -0.1
29,860 - -0.4
29,860 - +0.3
30,071 + -0.0
30,072 - -0.2
30,128 + +0.2
30,128 + +0.0
30,128 + -0.1
30,128 + +0.4
30,128 + -0.0
30,128 + +0.5
30,128 + -0.2
30,128 + -0.6
30,128 + -0.9
30,128 + -0.7
30,128 + +0.6
30,128 + +0.1
30,128 + +0.0
30,128 + +2.0
30,128 + +0.6
30,128 + -1.2
30,128 + -0.0
30,128 + -0.1
30,128 + +0.5
30,128 + +0.4
30,128 + -0.4
30,129 - -2.3
30,129 - +0.7
30,129 - -0.0
30,129 - -0.1
30,129 - -0.3
30,129 - -0.0
30,129 - +0.3
30,129 - +0.3
30,129 - -0.3
30,129 - +0.6
30,129 - +0.1
30,129 - +0.7
30,129 - +0.2
30,129 - -0.9
30,149 + Ac3H11_34 0.11 +0.1
30,150 - Ac3H11_34 0.11 +1.0
30,185 + Ac3H11_34 0.14 -0.9
30,185 + Ac3H11_34 0.14 +0.5
30,185 + Ac3H11_34 0.14 +0.4
30,185 + Ac3H11_34 0.14 +0.2
30,185 + Ac3H11_34 0.14 +0.6
30,185 + Ac3H11_34 0.14 +0.2
30,186 - Ac3H11_34 0.14 +0.3
30,186 - Ac3H11_34 0.14 +1.1
30,191 + Ac3H11_34 0.14 -0.3
30,191 + Ac3H11_34 0.14 -0.3
30,191 + Ac3H11_34 0.14 -0.2
30,191 + Ac3H11_34 0.14 +0.6
30,191 + Ac3H11_34 0.14 +1.0
30,191 + Ac3H11_34 0.14 -1.2
30,191 + Ac3H11_34 0.14 +0.8
30,191 + Ac3H11_34 0.14 -0.4
30,191 + Ac3H11_34 0.14 +0.3
30,191 + Ac3H11_34 0.14 -0.4
30,191 + Ac3H11_34 0.14 +0.1
30,191 + Ac3H11_34 0.14 +1.1
30,191 + Ac3H11_34 0.14 -0.4
30,191 + Ac3H11_34 0.14 -0.5
30,192 - Ac3H11_34 0.14 +0.5
30,192 - Ac3H11_34 0.14 +0.8
30,192 - Ac3H11_34 0.14 -0.0
30,192 - Ac3H11_34 0.14 -0.3
30,192 - Ac3H11_34 0.14 -0.5
30,192 - Ac3H11_34 0.14 +0.6
30,192 - Ac3H11_34 0.14 +0.1
30,192 - Ac3H11_34 0.14 -0.1
30,192 - Ac3H11_34 0.14 +0.2
30,192 - Ac3H11_34 0.14 -0.6
30,192 - Ac3H11_34 0.14 +1.1
30,356 + Ac3H11_34 0.27 +0.6
30,356 + Ac3H11_34 0.27 +0.3
30,356 + Ac3H11_34 0.27 -0.3
30,356 + Ac3H11_34 0.27 +0.3
30,357 - Ac3H11_34 0.27 -0.1
30,479 + Ac3H11_34 0.36 +0.2
30,480 - Ac3H11_34 0.36 +0.4
30,574 + Ac3H11_34 0.43 -0.3
30,575 - Ac3H11_34 0.43 +0.0
30,581 + Ac3H11_34 0.44 -1.6
30,581 + Ac3H11_34 0.44 -0.6
30,581 + Ac3H11_34 0.44 -0.0
30,581 + Ac3H11_34 0.44 +1.6
30,581 + Ac3H11_34 0.44 -0.6
30,581 + Ac3H11_34 0.44 +0.2
30,581 + Ac3H11_34 0.44 +0.6
30,581 + Ac3H11_34 0.44 -0.0
30,581 + Ac3H11_34 0.44 -0.9
30,582 - Ac3H11_34 0.44 +0.0
30,582 - Ac3H11_34 0.44 +0.7
30,582 - Ac3H11_34 0.44 -0.3
30,582 - Ac3H11_34 0.44 +0.7
30,582 - Ac3H11_34 0.44 -0.1
30,582 - Ac3H11_34 0.44 -0.1
30,582 - Ac3H11_34 0.44 -0.2
30,593 + Ac3H11_34 0.45 -0.8
30,594 - Ac3H11_34 0.45 -0.5
30,594 - Ac3H11_34 0.45 +0.3
30,594 - Ac3H11_34 0.45 +0.9
30,594 - Ac3H11_34 0.45 -0.9
30,594 - Ac3H11_34 0.45 +0.0
30,650 + Ac3H11_34 0.49 +0.0
30,650 + Ac3H11_34 0.49 +0.5
30,650 + Ac3H11_34 0.49 +1.7
30,650 + Ac3H11_34 0.49 -0.5
30,650 + Ac3H11_34 0.49 +1.0
30,650 + Ac3H11_34 0.49 -0.2
30,650 + Ac3H11_34 0.49 -0.4
30,650 + Ac3H11_34 0.49 -0.5
30,650 + Ac3H11_34 0.49 +0.8
30,650 + Ac3H11_34 0.49 +0.1
30,650 + Ac3H11_34 0.49 +0.0
30,651 - Ac3H11_34 0.49 -0.3
30,651 - Ac3H11_34 0.49 -0.2
30,651 - Ac3H11_34 0.49 -0.4
30,728 + Ac3H11_34 0.55 -1.6
30,728 + Ac3H11_34 0.55 +0.4
30,729 - Ac3H11_34 0.55 +0.4

Or see this region's nucleotide sequence