Experiment: 1-ethyl-3-methylimidazolium acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26150 and AO353_26155 are separated by 126 nucleotides AO353_26155 and AO353_26160 are separated by 86 nucleotides AO353_26160 and AO353_26165 are separated by 93 nucleotides AO353_26165 and AO353_26170 are separated by 710 nucleotides
AO353_26150: AO353_26150 - hypothetical protein, at 5,755,468 to 5,756,481
_26150
AO353_26155: AO353_26155 - hypothetical protein, at 5,756,608 to 5,756,877
_26155
AO353_26160: AO353_26160 - hypothetical protein, at 5,756,964 to 5,757,305
_26160
AO353_26165: AO353_26165 - hypothetical protein, at 5,757,399 to 5,757,587
_26165
AO353_26170: AO353_26170 - hydrolase Nlp/P60, at 5,758,298 to 5,759,062
_26170
Position (kb) 5757
5758 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5756.415 kb on + strand at 5756.415 kb on + strand at 5756.415 kb on + strand at 5756.415 kb on + strand at 5756.415 kb on + strand at 5756.415 kb on + strand at 5756.416 kb on - strand at 5756.416 kb on - strand at 5756.493 kb on - strand at 5756.539 kb on + strand at 5756.539 kb on + strand at 5756.539 kb on + strand at 5756.539 kb on + strand at 5756.539 kb on + strand at 5756.539 kb on + strand at 5756.539 kb on + strand at 5756.539 kb on + strand at 5756.539 kb on + strand at 5756.540 kb on - strand at 5756.540 kb on - strand at 5756.575 kb on + strand at 5756.575 kb on + strand at 5756.576 kb on - strand at 5756.576 kb on - strand at 5756.609 kb on + strand at 5756.609 kb on + strand at 5756.610 kb on - strand at 5756.610 kb on - strand at 5756.628 kb on + strand at 5756.640 kb on + strand, within AO353_26155 at 5756.640 kb on + strand, within AO353_26155 at 5756.641 kb on - strand, within AO353_26155 at 5756.641 kb on - strand, within AO353_26155 at 5756.641 kb on - strand, within AO353_26155 at 5756.641 kb on - strand, within AO353_26155 at 5756.642 kb on + strand, within AO353_26155 at 5756.642 kb on + strand, within AO353_26155 at 5756.642 kb on + strand, within AO353_26155 at 5756.642 kb on + strand, within AO353_26155 at 5756.642 kb on + strand, within AO353_26155 at 5756.642 kb on + strand, within AO353_26155 at 5756.642 kb on + strand, within AO353_26155 at 5756.643 kb on - strand, within AO353_26155 at 5756.643 kb on - strand, within AO353_26155 at 5756.643 kb on - strand, within AO353_26155 at 5756.653 kb on + strand, within AO353_26155 at 5756.653 kb on + strand, within AO353_26155 at 5756.653 kb on + strand, within AO353_26155 at 5756.654 kb on - strand, within AO353_26155 at 5756.654 kb on - strand, within AO353_26155 at 5756.680 kb on + strand, within AO353_26155 at 5756.681 kb on - strand, within AO353_26155 at 5756.681 kb on - strand, within AO353_26155 at 5756.701 kb on + strand, within AO353_26155 at 5756.777 kb on + strand, within AO353_26155 at 5756.888 kb on + strand at 5756.910 kb on - strand at 5756.965 kb on + strand at 5756.965 kb on + strand at 5756.965 kb on + strand at 5756.965 kb on + strand at 5756.965 kb on + strand at 5756.965 kb on + strand at 5756.965 kb on + strand at 5756.965 kb on + strand at 5756.966 kb on - strand at 5756.966 kb on - strand at 5756.966 kb on - strand at 5756.966 kb on - strand at 5756.966 kb on - strand at 5756.966 kb on - strand at 5756.966 kb on - strand at 5757.007 kb on + strand, within AO353_26160 at 5757.008 kb on - strand, within AO353_26160 at 5757.008 kb on - strand, within AO353_26160 at 5757.055 kb on + strand, within AO353_26160 at 5757.055 kb on + strand, within AO353_26160 at 5757.055 kb on + strand, within AO353_26160 at 5757.055 kb on + strand, within AO353_26160 at 5757.056 kb on - strand, within AO353_26160 at 5757.056 kb on - strand, within AO353_26160 at 5757.056 kb on - strand, within AO353_26160 at 5757.147 kb on + strand, within AO353_26160 at 5757.147 kb on + strand, within AO353_26160 at 5757.147 kb on + strand, within AO353_26160 at 5757.148 kb on - strand, within AO353_26160 at 5757.148 kb on - strand, within AO353_26160 at 5757.220 kb on + strand, within AO353_26160 at 5757.220 kb on + strand, within AO353_26160 at 5757.221 kb on - strand, within AO353_26160 at 5757.221 kb on - strand, within AO353_26160 at 5757.221 kb on - strand, within AO353_26160 at 5757.234 kb on + strand, within AO353_26160 at 5757.240 kb on + strand, within AO353_26160 at 5757.257 kb on + strand, within AO353_26160 at 5757.257 kb on + strand, within AO353_26160 at 5757.257 kb on + strand, within AO353_26160 at 5757.258 kb on - strand, within AO353_26160 at 5757.258 kb on - strand, within AO353_26160 at 5757.336 kb on + strand at 5757.336 kb on + strand at 5757.336 kb on + strand at 5757.337 kb on - strand at 5757.337 kb on - strand at 5757.337 kb on - strand at 5757.385 kb on + strand at 5757.386 kb on - strand at 5757.387 kb on + strand at 5757.388 kb on - strand at 5757.388 kb on - strand at 5757.388 kb on - strand at 5757.434 kb on + strand, within AO353_26165 at 5757.434 kb on + strand, within AO353_26165 at 5757.434 kb on + strand, within AO353_26165 at 5757.434 kb on + strand, within AO353_26165 at 5757.435 kb on - strand, within AO353_26165 at 5757.439 kb on + strand, within AO353_26165 at 5757.439 kb on + strand, within AO353_26165 at 5757.440 kb on - strand, within AO353_26165 at 5757.440 kb on - strand, within AO353_26165 at 5757.508 kb on - strand, within AO353_26165 at 5757.593 kb on + strand at 5757.593 kb on + strand at 5757.593 kb on + strand at 5757.594 kb on - strand at 5757.598 kb on - strand at 5757.598 kb on - strand at 5757.608 kb on + strand at 5757.608 kb on + strand at 5757.609 kb on - strand at 5757.609 kb on - strand at 5757.609 kb on - strand at 5757.654 kb on - strand at 5757.666 kb on - strand at 5757.669 kb on + strand at 5757.669 kb on + strand at 5757.696 kb on - strand at 5757.739 kb on + strand at 5757.772 kb on + strand at 5757.773 kb on - strand at 5757.773 kb on - strand at 5757.773 kb on - strand at 5757.776 kb on + strand at 5757.777 kb on - strand at 5757.777 kb on - strand at 5757.777 kb on - strand at 5757.889 kb on - strand at 5758.050 kb on + strand at 5758.050 kb on + strand at 5758.050 kb on + strand at 5758.050 kb on + strand at 5758.050 kb on + strand at 5758.050 kb on + strand at 5758.050 kb on + strand at 5758.051 kb on - strand at 5758.051 kb on - strand at 5758.051 kb on - strand at 5758.052 kb on + strand at 5758.072 kb on + strand at 5758.072 kb on + strand at 5758.072 kb on + strand at 5758.072 kb on + strand at 5758.072 kb on + strand at 5758.072 kb on + strand at 5758.073 kb on - strand at 5758.083 kb on + strand at 5758.083 kb on + strand at 5758.083 kb on + strand at 5758.083 kb on + strand at 5758.083 kb on + strand at 5758.083 kb on + strand at 5758.084 kb on - strand at 5758.084 kb on - strand at 5758.084 kb on - strand at 5758.084 kb on - strand at 5758.084 kb on - strand at 5758.084 kb on - strand at 5758.097 kb on + strand at 5758.097 kb on + strand at 5758.097 kb on + strand at 5758.097 kb on + strand at 5758.097 kb on + strand at 5758.097 kb on + strand at 5758.098 kb on - strand at 5758.098 kb on - strand at 5758.098 kb on - strand at 5758.098 kb on - strand at 5758.098 kb on - strand at 5758.098 kb on - strand at 5758.099 kb on + strand at 5758.099 kb on + strand at 5758.099 kb on + strand at 5758.099 kb on + strand at 5758.099 kb on + strand at 5758.099 kb on + strand at 5758.099 kb on + strand at 5758.099 kb on + strand at 5758.100 kb on - strand at 5758.100 kb on - strand at 5758.100 kb on - strand at 5758.100 kb on - strand at 5758.137 kb on - strand at 5758.242 kb on + strand at 5758.243 kb on - strand at 5758.243 kb on - strand at 5758.272 kb on + strand at 5758.272 kb on + strand at 5758.272 kb on + strand at 5758.272 kb on + strand at 5758.273 kb on - strand at 5758.273 kb on - strand at 5758.299 kb on + strand at 5758.299 kb on + strand at 5758.299 kb on + strand at 5758.299 kb on + strand at 5758.299 kb on + strand at 5758.299 kb on + strand at 5758.300 kb on - strand at 5758.300 kb on - strand at 5758.300 kb on - strand at 5758.300 kb on - strand at 5758.394 kb on + strand, within AO353_26170 at 5758.394 kb on + strand, within AO353_26170 at 5758.394 kb on + strand, within AO353_26170 at 5758.395 kb on - strand, within AO353_26170 at 5758.395 kb on - strand, within AO353_26170 at 5758.395 kb on - strand, within AO353_26170 at 5758.395 kb on - strand, within AO353_26170 at 5758.395 kb on - strand, within AO353_26170 at 5758.395 kb on - strand, within AO353_26170 at 5758.406 kb on + strand, within AO353_26170 at 5758.407 kb on - strand, within AO353_26170 at 5758.505 kb on + strand, within AO353_26170 at 5758.569 kb on + strand, within AO353_26170 at 5758.569 kb on + strand, within AO353_26170 at 5758.569 kb on + strand, within AO353_26170 at 5758.570 kb on - strand, within AO353_26170 at 5758.570 kb on - strand, within AO353_26170 at 5758.570 kb on - strand, within AO353_26170 at 5758.581 kb on + strand, within AO353_26170 at 5758.582 kb on - strand, within AO353_26170
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 15 mM remove 5,756,415 + -2.3 5,756,415 + -0.2 5,756,415 + -0.3 5,756,415 + +0.1 5,756,415 + -0.8 5,756,415 + -0.1 5,756,416 - -0.8 5,756,416 - +1.1 5,756,493 - +0.7 5,756,539 + -2.5 5,756,539 + +0.7 5,756,539 + -0.2 5,756,539 + -0.8 5,756,539 + +0.7 5,756,539 + -1.5 5,756,539 + -0.2 5,756,539 + +0.7 5,756,539 + +0.7 5,756,540 - +1.1 5,756,540 - -0.0 5,756,575 + -0.3 5,756,575 + +0.2 5,756,576 - -0.1 5,756,576 - -0.9 5,756,609 + -0.3 5,756,609 + +0.7 5,756,610 - -0.3 5,756,610 - -0.3 5,756,628 + -0.6 5,756,640 + AO353_26155 0.12 -0.9 5,756,640 + AO353_26155 0.12 -0.9 5,756,641 - AO353_26155 0.12 -0.3 5,756,641 - AO353_26155 0.12 -2.0 5,756,641 - AO353_26155 0.12 +0.2 5,756,641 - AO353_26155 0.12 -1.9 5,756,642 + AO353_26155 0.13 -0.3 5,756,642 + AO353_26155 0.13 +0.5 5,756,642 + AO353_26155 0.13 +0.3 5,756,642 + AO353_26155 0.13 -0.6 5,756,642 + AO353_26155 0.13 -2.1 5,756,642 + AO353_26155 0.13 -1.8 5,756,642 + AO353_26155 0.13 +1.2 5,756,643 - AO353_26155 0.13 +1.0 5,756,643 - AO353_26155 0.13 -0.9 5,756,643 - AO353_26155 0.13 -1.4 5,756,653 + AO353_26155 0.17 -1.0 5,756,653 + AO353_26155 0.17 +2.2 5,756,653 + AO353_26155 0.17 -0.8 5,756,654 - AO353_26155 0.17 -0.8 5,756,654 - AO353_26155 0.17 -1.3 5,756,680 + AO353_26155 0.27 -0.9 5,756,681 - AO353_26155 0.27 -1.7 5,756,681 - AO353_26155 0.27 -0.1 5,756,701 + AO353_26155 0.34 -0.3 5,756,777 + AO353_26155 0.63 -1.7 5,756,888 + -0.1 5,756,910 - -0.3 5,756,965 + -2.3 5,756,965 + +0.8 5,756,965 + +0.7 5,756,965 + -1.5 5,756,965 + -0.8 5,756,965 + -0.9 5,756,965 + -0.9 5,756,965 + -0.1 5,756,966 - +2.1 5,756,966 - -0.3 5,756,966 - +0.1 5,756,966 - -1.2 5,756,966 - -2.7 5,756,966 - -0.1 5,756,966 - -1.0 5,757,007 + AO353_26160 0.13 -0.1 5,757,008 - AO353_26160 0.13 +0.0 5,757,008 - AO353_26160 0.13 -0.9 5,757,055 + AO353_26160 0.27 +0.7 5,757,055 + AO353_26160 0.27 -0.2 5,757,055 + AO353_26160 0.27 -1.9 5,757,055 + AO353_26160 0.27 -1.3 5,757,056 - AO353_26160 0.27 -0.6 5,757,056 - AO353_26160 0.27 +0.2 5,757,056 - AO353_26160 0.27 +1.9 5,757,147 + AO353_26160 0.54 +0.1 5,757,147 + AO353_26160 0.54 -1.4 5,757,147 + AO353_26160 0.54 -0.3 5,757,148 - AO353_26160 0.54 -0.5 5,757,148 - AO353_26160 0.54 -1.7 5,757,220 + AO353_26160 0.75 +0.7 5,757,220 + AO353_26160 0.75 +1.2 5,757,221 - AO353_26160 0.75 -1.9 5,757,221 - AO353_26160 0.75 +0.7 5,757,221 - AO353_26160 0.75 +0.2 5,757,234 + AO353_26160 0.79 -0.7 5,757,240 + AO353_26160 0.81 +1.7 5,757,257 + AO353_26160 0.86 -0.2 5,757,257 + AO353_26160 0.86 +1.4 5,757,257 + AO353_26160 0.86 -0.8 5,757,258 - AO353_26160 0.86 -1.7 5,757,258 - AO353_26160 0.86 +0.1 5,757,336 + -1.3 5,757,336 + +1.4 5,757,336 + +1.7 5,757,337 - +1.2 5,757,337 - -1.7 5,757,337 - +1.7 5,757,385 + +0.7 5,757,386 - +1.1 5,757,387 + +0.2 5,757,388 - -0.3 5,757,388 - +0.2 5,757,388 - +1.9 5,757,434 + AO353_26165 0.19 -1.7 5,757,434 + AO353_26165 0.19 -0.8 5,757,434 + AO353_26165 0.19 -1.7 5,757,434 + AO353_26165 0.19 -1.1 5,757,435 - AO353_26165 0.19 -0.3 5,757,439 + AO353_26165 0.21 -0.3 5,757,439 + AO353_26165 0.21 +0.7 5,757,440 - AO353_26165 0.22 -0.6 5,757,440 - AO353_26165 0.22 -0.3 5,757,508 - AO353_26165 0.58 +0.7 5,757,593 + -0.9 5,757,593 + -0.3 5,757,593 + -0.8 5,757,594 - -0.3 5,757,598 - -0.9 5,757,598 - -1.1 5,757,608 + +1.7 5,757,608 + +0.3 5,757,609 - -1.7 5,757,609 - +1.2 5,757,609 - +0.7 5,757,654 - +0.1 5,757,666 - -1.7 5,757,669 + +0.1 5,757,669 + -0.2 5,757,696 - -0.1 5,757,739 + -2.1 5,757,772 + -2.3 5,757,773 - +2.1 5,757,773 - -0.3 5,757,773 - -0.2 5,757,776 + -1.3 5,757,777 - -0.6 5,757,777 - -0.6 5,757,777 - -0.7 5,757,889 - +0.2 5,758,050 + +0.7 5,758,050 + -0.3 5,758,050 + -0.8 5,758,050 + -1.7 5,758,050 + +0.2 5,758,050 + +1.5 5,758,050 + -0.3 5,758,051 - -0.5 5,758,051 - +0.9 5,758,051 - +0.3 5,758,052 + -0.1 5,758,072 + +2.0 5,758,072 + +0.1 5,758,072 + -0.2 5,758,072 + -0.2 5,758,072 + +0.7 5,758,072 + +1.4 5,758,073 - -1.1 5,758,083 + +0.4 5,758,083 + +1.7 5,758,083 + -1.5 5,758,083 + +2.7 5,758,083 + +0.7 5,758,083 + -1.9 5,758,084 - -0.3 5,758,084 - -1.1 5,758,084 - -0.5 5,758,084 - +0.3 5,758,084 - -0.8 5,758,084 - +0.7 5,758,097 + +0.2 5,758,097 + -1.5 5,758,097 + -1.1 5,758,097 + -1.1 5,758,097 + +0.2 5,758,097 + -0.8 5,758,098 - -0.3 5,758,098 - +0.7 5,758,098 - -0.7 5,758,098 - -0.1 5,758,098 - +0.3 5,758,098 - -2.2 5,758,099 + +1.2 5,758,099 + +0.7 5,758,099 + +0.5 5,758,099 + -0.9 5,758,099 + +1.1 5,758,099 + +0.2 5,758,099 + +0.9 5,758,099 + -1.7 5,758,100 - -0.3 5,758,100 - -0.9 5,758,100 - -1.1 5,758,100 - +0.7 5,758,137 - +2.5 5,758,242 + -0.5 5,758,243 - -1.7 5,758,243 - -0.9 5,758,272 + -0.8 5,758,272 + -1.9 5,758,272 + -0.6 5,758,272 + +0.7 5,758,273 - +0.7 5,758,273 - -1.3 5,758,299 + -2.3 5,758,299 + +0.8 5,758,299 + -0.0 5,758,299 + -0.0 5,758,299 + -0.3 5,758,299 + +1.7 5,758,300 - +0.3 5,758,300 - +0.8 5,758,300 - -0.6 5,758,300 - -0.6 5,758,394 + AO353_26170 0.13 -1.3 5,758,394 + AO353_26170 0.13 -1.9 5,758,394 + AO353_26170 0.13 +0.4 5,758,395 - AO353_26170 0.13 -0.3 5,758,395 - AO353_26170 0.13 -0.1 5,758,395 - AO353_26170 0.13 +1.4 5,758,395 - AO353_26170 0.13 -0.1 5,758,395 - AO353_26170 0.13 +0.7 5,758,395 - AO353_26170 0.13 +0.4 5,758,406 + AO353_26170 0.14 +0.7 5,758,407 - AO353_26170 0.14 -0.0 5,758,505 + AO353_26170 0.27 -1.7 5,758,569 + AO353_26170 0.35 -0.7 5,758,569 + AO353_26170 0.35 -1.1 5,758,569 + AO353_26170 0.35 +1.0 5,758,570 - AO353_26170 0.36 +0.1 5,758,570 - AO353_26170 0.36 -0.2 5,758,570 - AO353_26170 0.36 -0.8 5,758,581 + AO353_26170 0.37 +0.7 5,758,582 - AO353_26170 0.37 -0.9
Or see this region's nucleotide sequence